RNA–Protein interactions for RNA: ENST00000339394.6

SDC3-202, Transcript of syndecan 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC3, Length 1,580 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-202ENST00000339394 RAB11FIP4Q86YS3 637 aa25.9■■□□□ 1.74
SDC3-202ENST00000339394 IL27Q8NEV9 243 aa25.9■■□□□ 1.74
SDC3-202ENST00000339394 ST18O60284 1047 aa25.9■■□□□ 1.74
SDC3-202ENST00000339394 RXRAP19793 462 aa25.9■■□□□ 1.74
SDC3-202ENST00000339394 MAP2K2P36507 400 aa25.9■■□□□ 1.74
SDC3-202ENST00000339394 TM4SF4P48230 202 aa25.9■■□□□ 1.74
SDC3-202ENST00000339394 KCTD1Q719H9 257 aa25.9■■□□□ 1.74
SDC3-202ENST00000339394 MICU3Q86XE3 530 aa25.9■■□□□ 1.74
SDC3-202ENST00000339394 NAP1L2Q9ULW6 460 aaPredicted RBP25.9■■□□□ 1.74
SDC3-202ENST00000339394 ZBTB43O43298 467 aa25.89■■□□□ 1.73
SDC3-202ENST00000339394 HOXA7P31268 230 aaPredicted RBP25.89■■□□□ 1.73
SDC3-202ENST00000339394 NOL8Q76FK4 1167 aaKnown RBP25.89■■□□□ 1.73
SDC3-202ENST00000339394 ANKRD23Q86SG2 305 aa25.89■■□□□ 1.73
SDC3-202ENST00000339394 FAM43AQ8N2R8 423 aa25.89■■□□□ 1.73
SDC3-202ENST00000339394 MAP3K14Q99558 947 aa25.89■■□□□ 1.73
SDC3-202ENST00000339394 TPCN1Q9ULQ1 816 aa25.89■■□□□ 1.73
SDC3-202ENST00000339394 FRMPD2Q68DX3 1309 aaPredicted RBP25.89■■□□□ 1.73
SDC3-202ENST00000339394 IGF2BP3O00425 579 aaKnown RBP eCLIP25.88■■□□□ 1.73
SDC3-202ENST00000339394 GOLGA8HP0CJ92 632 aa25.88■■□□□ 1.73
SDC3-202ENST00000339394 CALM1P0DP23 149 aa25.88■■□□□ 1.73
SDC3-202ENST00000339394 CALM2P0DP24 149 aa25.88■■□□□ 1.73
SDC3-202ENST00000339394 CALM3P0DP25 149 aa25.88■■□□□ 1.73
SDC3-202ENST00000339394 ZNF543Q08ER8 600 aa25.88■■□□□ 1.73
SDC3-202ENST00000339394 CCDC96Q2M329 555 aa25.88■■□□□ 1.73
SDC3-202ENST00000339394 IFNL1Q8IU54 200 aa25.88■■□□□ 1.73
SDC3-202ENST00000339394 TANGO6Q9C0B7 1094 aa25.88■■□□□ 1.73
SDC3-202ENST00000339394 ISY1Q9ULR0 285 aaKnown RBP25.88■■□□□ 1.73
SDC3-202ENST00000339394 GOLGA8BA8MQT2 603 aa25.87■■□□□ 1.73
SDC3-202ENST00000339394 USP17L15C9J2P7 530 aa25.87■■□□□ 1.73
SDC3-202ENST00000339394 USP17L13C9JLJ4 530 aa25.87■■□□□ 1.73
SDC3-202ENST00000339394 USP17L11C9JVI0 530 aa25.87■■□□□ 1.73
SDC3-202ENST00000339394 USP17L18D6R9N7 530 aa25.87■■□□□ 1.73
SDC3-202ENST00000339394 USP17L22D6RA61 530 aa25.87■■□□□ 1.73
SDC3-202ENST00000339394 USP17L17D6RBQ6 530 aa25.87■■□□□ 1.73
SDC3-202ENST00000339394 USP17L19D6RCP7 530 aa25.87■■□□□ 1.73
SDC3-202ENST00000339394 USP17L20D6RJB6 530 aa25.87■■□□□ 1.73
SDC3-202ENST00000339394 PARP1P09874 1014 aaKnown RBP25.87■■□□□ 1.73
SDC3-202ENST00000339394 PDIA3P30101 505 aaKnown RBP25.87■■□□□ 1.73
SDC3-202ENST00000339394 USP17L24Q0WX57 530 aa25.87■■□□□ 1.73
SDC3-202ENST00000339394 CATSPERGQ6ZRH7 1159 aa25.87■■□□□ 1.73
SDC3-202ENST00000339394 CCDC144CPQ8IYA2 1237 aa25.87■■□□□ 1.73
SDC3-202ENST00000339394 FANCBQ8NB91 859 aa25.87■■□□□ 1.73
SDC3-202ENST00000339394 ZNF274Q96GC6 653 aaPredicted RBP25.87■■□□□ 1.73
SDC3-202ENST00000339394 MAD2L2Q9UI95 211 aa25.87■■□□□ 1.73
SDC3-202ENST00000339394 HPS5Q9UPZ3 1129 aa25.87■■□□□ 1.73
SDC3-202ENST00000339394 MYH4Q9Y623 1939 aa25.87■■□□□ 1.73
SDC3-202ENST00000339394 PALM3A6NDB9 673 aaPredicted RBP25.86■■□□□ 1.73
SDC3-202ENST00000339394 TMEM232C9JQI7 657 aa25.86■■□□□ 1.73
SDC3-202ENST00000339394 PDHXO00330 501 aa25.86■■□□□ 1.73
SDC3-202ENST00000339394 CD2BP2O95400 341 aaKnown RBP25.86■■□□□ 1.73
SDC3-202ENST00000339394 RCAN1P53805 252 aa25.86■■□□□ 1.73
SDC3-202ENST00000339394 PABPC4Q13310 644 aaKnown RBP eCLIP25.86■■□□□ 1.73
SDC3-202ENST00000339394 GRM4Q14833 912 aa25.86■■□□□ 1.73
SDC3-202ENST00000339394 GPATCH4Q5T3I0 446 aaKnown RBP25.86■■□□□ 1.73
SDC3-202ENST00000339394 REM2Q8IYK8 340 aaPredicted RBP25.86■■□□□ 1.73
SDC3-202ENST00000339394 STAG2Q8N3U4 1231 aa25.86■■□□□ 1.73
SDC3-202ENST00000339394 GPCPD1Q9NPB8 672 aa25.86■■□□□ 1.73
SDC3-202ENST00000339394 SLC45A1Q9Y2W3 748 aa25.86■■□□□ 1.73
SDC3-202ENST00000339394 ASPRV1Q53RT3 343 aa25.86■■□□□ 1.73
SDC3-202ENST00000339394 TTBK2Q6IQ55 1244 aa25.86■■□□□ 1.73
SDC3-202ENST00000339394 DNAJC5GQ8N7S2 189 aa25.86■■□□□ 1.73
SDC3-202ENST00000339394 CTCFLQ8NI51 663 aaPredicted RBP25.86■■□□□ 1.73
SDC3-202ENST00000339394 FBXO28Q9NVF7 368 aa25.86■■□□□ 1.73
SDC3-202ENST00000339394 FLOT1O75955 427 aa25.85■■□□□ 1.73
SDC3-202ENST00000339394 METAP2P50579 478 aaKnown RBP eCLIP25.85■■□□□ 1.73
SDC3-202ENST00000339394 PTPRFP10586 1907 aa25.84■■□□□ 1.73
SDC3-202ENST00000339394 GOLGA8AA7E2F4 631 aa25.84■■□□□ 1.73
SDC3-202ENST00000339394 KIF5BP33176 963 aa25.84■■□□□ 1.73
SDC3-202ENST00000339394 STAT2P52630 851 aa25.84■■□□□ 1.73
SDC3-202ENST00000339394 COG2Q14746 738 aa25.84■■□□□ 1.73
SDC3-202ENST00000339394 OTUD7BQ6GQQ9 843 aa25.84■■□□□ 1.73
SDC3-202ENST00000339394 ASCC2Q9H1I8 757 aaPredicted RBP25.84■■□□□ 1.73
SDC3-202ENST00000339394 FEM1BQ9UK73 627 aa25.84■■□□□ 1.73
SDC3-202ENST00000339394 LIMCH1Q9UPQ0 1083 aa25.84■■□□□ 1.73
SDC3-202ENST00000339394 IRX3P78415 501 aaPredicted RBP25.83■■□□□ 1.73
SDC3-202ENST00000339394 STK3Q13188 491 aa25.83■■□□□ 1.73
SDC3-202ENST00000339394 ME3Q16798 604 aa25.83■■□□□ 1.73
SDC3-202ENST00000339394 FAM217BQ9NTX9 383 aaPredicted RBP25.83■■□□□ 1.73
SDC3-202ENST00000339394 LOC285556D6RIA3 1793 aa25.82■■□□□ 1.72
SDC3-202ENST00000339394 KLRF2D3W0D1 207 aa25.82■■□□□ 1.72
SDC3-202ENST00000339394 PLA2G6O60733 806 aa25.82■■□□□ 1.72
SDC3-202ENST00000339394 OSBPP22059 807 aa25.82■■□□□ 1.72
SDC3-202ENST00000339394 SLC16A2P36021 539 aa25.82■■□□□ 1.72
SDC3-202ENST00000339394 CCT2P78371 535 aaKnown RBP25.82■■□□□ 1.72
SDC3-202ENST00000339394 IKQ13123 557 aaPredicted RBP25.82■■□□□ 1.72
SDC3-202ENST00000339394 RTN1Q16799 776 aa25.82■■□□□ 1.72
SDC3-202ENST00000339394 CHURC1Q8WUH1 139 aa25.82■■□□□ 1.72
SDC3-202ENST00000339394 P2RX7Q99572 595 aaKnown RBP25.82■■□□□ 1.72
SDC3-202ENST00000339394 UBA5Q9GZZ9 404 aa25.82■■□□□ 1.72
SDC3-202ENST00000339394 CPVLQ9H3G5 476 aa25.82■■□□□ 1.72
SDC3-202ENST00000339394 ZCCHC17Q9NP64 241 aaKnown RBP25.82■■□□□ 1.72
SDC3-202ENST00000339394 PNMA3Q9UL41 463 aa25.82■■□□□ 1.72
SDC3-202ENST00000339394 LARGE1O95461 756 aa25.82■■□□□ 1.72
SDC3-202ENST00000339394 CYP2C8P10632 490 aa25.82■■□□□ 1.72
SDC3-202ENST00000339394 CDC27P30260 824 aa25.82■■□□□ 1.72
SDC3-202ENST00000339394 ADD1P35611 737 aaKnown RBP25.82■■□□□ 1.72
SDC3-202ENST00000339394 PPP2R5BQ15173 497 aa25.82■■□□□ 1.72
SDC3-202ENST00000339394 SAMD1Q6SPF0 538 aaPredicted RBP25.82■■□□□ 1.72
SDC3-202ENST00000339394 BTNL9Q6UXG8 535 aa25.82■■□□□ 1.72
SDC3-202ENST00000339394 PRPF38AQ8NAV1 312 aaKnown RBP25.82■■□□□ 1.72
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms