RNA–Protein interactions for RNA: ENST00000328923.7

SHMT2-201, Transcript of serine hydroxymethyltransferase 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHMT2, Length 2,537 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-201ENST00000328923 KDM3BQ7LBC6 1761 aa13.25□□□□□ -0.29
SHMT2-201ENST00000328923 MRC1P22897 1456 aa13.25□□□□□ -0.29
SHMT2-201ENST00000328923 SPATA31A3Q5VYP0 1347 aa13.25□□□□□ -0.29
SHMT2-201ENST00000328923 M0R2C6 588 aa13.25□□□□□ -0.29
SHMT2-201ENST00000328923 CYP27B1O15528 508 aa13.25□□□□□ -0.29
SHMT2-201ENST00000328923 ALDH1L1O75891 902 aa13.25□□□□□ -0.29
SHMT2-201ENST00000328923 BLMHQ13867 455 aa13.25□□□□□ -0.29
SHMT2-201ENST00000328923 ANKRD20A8PQ5CZ79 823 aa13.25□□□□□ -0.29
SHMT2-201ENST00000328923 ZNF530Q6P9A1 599 aaPredicted RBP13.25□□□□□ -0.29
SHMT2-201ENST00000328923 DDX46Q7L014 1031 aaKnown RBP13.25□□□□□ -0.29
SHMT2-201ENST00000328923 GALNT15Q8N3T1 639 aa13.25□□□□□ -0.29
SHMT2-201ENST00000328923 MRPS27Q92552 414 aaKnown RBP13.25□□□□□ -0.29
SHMT2-201ENST00000328923 NECTIN2Q92692 538 aa13.25□□□□□ -0.29
SHMT2-201ENST00000328923 FAM167BQ9BTA0 163 aa13.25□□□□□ -0.29
SHMT2-201ENST00000328923 PHAXQ9H814 394 aaKnown RBP13.25□□□□□ -0.29
SHMT2-201ENST00000328923 A0A0D9SFI3 127 aa13.24□□□□□ -0.29
SHMT2-201ENST00000328923 OPA1O60313 960 aa13.24□□□□□ -0.29
SHMT2-201ENST00000328923 TBX2Q13207 712 aaPredicted RBP13.24□□□□□ -0.29
SHMT2-201ENST00000328923 SPECC1Q5M775 1068 aa13.24□□□□□ -0.29
SHMT2-201ENST00000328923 SYCP3Q8IZU3 236 aa13.24□□□□□ -0.29
SHMT2-201ENST00000328923 MYCBPAPQ8TBZ2 947 aa13.24□□□□□ -0.29
SHMT2-201ENST00000328923 HINFPQ9BQA5 517 aa13.24□□□□□ -0.29
SHMT2-201ENST00000328923 IKBKBO14920 756 aa13.24□□□□□ -0.29
SHMT2-201ENST00000328923 ELF3P78545 371 aaPredicted RBP13.24□□□□□ -0.29
SHMT2-201ENST00000328923 NLRP14Q86W24 1093 aa13.24□□□□□ -0.29
SHMT2-201ENST00000328923 RRP36Q96EU6 259 aaKnown RBP13.24□□□□□ -0.29
SHMT2-201ENST00000328923 RNPC3Q96LT9 517 aaKnown RBP13.24□□□□□ -0.29
SHMT2-201ENST00000328923 RANBP17Q9H2T7 1088 aaKnown RBP13.24□□□□□ -0.29
SHMT2-201ENST00000328923 PPFIA3O75145 1194 aa13.23□□□□□ -0.29
SHMT2-201ENST00000328923 ABL1P00519 1130 aa13.23□□□□□ -0.29
SHMT2-201ENST00000328923 ABL2P42684 1182 aa13.23□□□□□ -0.29
SHMT2-201ENST00000328923 SCTRP47872 440 aa13.23□□□□□ -0.29
SHMT2-201ENST00000328923 ME1P48163 572 aa13.23□□□□□ -0.29
SHMT2-201ENST00000328923 NLRP12P59046 1061 aa13.23□□□□□ -0.29
SHMT2-201ENST00000328923 XRCC4Q13426 336 aa13.23□□□□□ -0.29
SHMT2-201ENST00000328923 HSP90AA4PQ58FG1 418 aa13.23□□□□□ -0.29
SHMT2-201ENST00000328923 KCTD16Q68DU8 428 aa13.23□□□□□ -0.29
SHMT2-201ENST00000328923 ADALQ6DHV7 355 aa13.23□□□□□ -0.29
SHMT2-201ENST00000328923 AACSQ86V21 672 aa13.23□□□□□ -0.29
SHMT2-201ENST00000328923 NEK1Q96PY6 1258 aa13.23□□□□□ -0.29
SHMT2-201ENST00000328923 USP28Q96RU2 1077 aa13.23□□□□□ -0.29
SHMT2-201ENST00000328923 NAPGQ99747 312 aaPredicted RBP13.23□□□□□ -0.29
SHMT2-201ENST00000328923 ZFATQ9P243 1243 aa13.23□□□□□ -0.29
SHMT2-201ENST00000328923 ADGRG1Q9Y653 693 aa13.23□□□□□ -0.29
SHMT2-201ENST00000328923 ABCA3Q99758 1704 aa13.23□□□□□ -0.29
SHMT2-201ENST00000328923 LGR5O75473 907 aa13.23□□□□□ -0.29
SHMT2-201ENST00000328923 FOSBP53539 338 aa13.23□□□□□ -0.29
SHMT2-201ENST00000328923 CUL3Q13618 768 aa13.23□□□□□ -0.29
SHMT2-201ENST00000328923 PTGISQ16647 500 aa13.23□□□□□ -0.29
SHMT2-201ENST00000328923 MTRQ99707 1265 aa13.23□□□□□ -0.29
SHMT2-201ENST00000328923 COL18A1P39060 1754 aa13.23□□□□□ -0.29
SHMT2-201ENST00000328923 LIN7AO14910 233 aaPredicted RBP13.22□□□□□ -0.29
SHMT2-201ENST00000328923 TAF5LO75529 589 aa13.22□□□□□ -0.29
SHMT2-201ENST00000328923 CAPN15O75808 1086 aa13.22□□□□□ -0.29
SHMT2-201ENST00000328923 MYBPC3Q14896 1274 aa13.22□□□□□ -0.29
SHMT2-201ENST00000328923 RAD9BQ6WBX8 426 aa13.22□□□□□ -0.29
SHMT2-201ENST00000328923 FSD1Q9BTV5 496 aa13.22□□□□□ -0.29
SHMT2-201ENST00000328923 UBE2OQ9C0C9 1292 aaKnown RBP13.22□□□□□ -0.29
SHMT2-201ENST00000328923 TAF6LQ9Y6J9 622 aa13.22□□□□□ -0.29
SHMT2-201ENST00000328923 NEDD4P46934 1319 aa13.22□□□□□ -0.29
SHMT2-201ENST00000328923 LRRC10BA6NIK2 292 aa13.22□□□□□ -0.29
SHMT2-201ENST00000328923 NUTM2BA6NNL0 878 aaPredicted RBP13.22□□□□□ -0.29
SHMT2-201ENST00000328923 NUTM2EB1AL46 878 aaPredicted RBP13.22□□□□□ -0.29
SHMT2-201ENST00000328923 DIAPH2O60879 1101 aa13.22□□□□□ -0.29
SHMT2-201ENST00000328923 MCM3P25205 808 aa13.22□□□□□ -0.29
SHMT2-201ENST00000328923 NDUFA8P51970 172 aa13.22□□□□□ -0.29
SHMT2-201ENST00000328923 APBA1Q02410 837 aa13.22□□□□□ -0.29
SHMT2-201ENST00000328923 C1orf141Q5JVX7 400 aa13.22□□□□□ -0.29
SHMT2-201ENST00000328923 NUGGCQ68CJ6 796 aa13.22□□□□□ -0.29
SHMT2-201ENST00000328923 MPRIPQ6WCQ1 1025 aa13.22□□□□□ -0.29
SHMT2-201ENST00000328923 NUTM2AQ8IVF1 878 aaPredicted RBP13.22□□□□□ -0.29
SHMT2-201ENST00000328923 NSUN7Q8NE18 718 aaKnown RBP13.22□□□□□ -0.29
SHMT2-201ENST00000328923 ZFAND2BQ8WV99 257 aa13.22□□□□□ -0.29
SHMT2-201ENST00000328923 IQCGQ9H095 443 aaKnown RBP13.22□□□□□ -0.29
SHMT2-201ENST00000328923 SLC5A4Q9NY91 659 aa13.22□□□□□ -0.29
SHMT2-201ENST00000328923 GGA2Q9UJY4 613 aa13.22□□□□□ -0.29
SHMT2-201ENST00000328923 SALL1Q9NSC2 1324 aa13.22□□□□□ -0.29
SHMT2-201ENST00000328923 A6NNZ2 444 aa13.21□□□□□ -0.29
SHMT2-201ENST00000328923 TUBB8Q3ZCM7 444 aa13.21□□□□□ -0.29
SHMT2-201ENST00000328923 MSL1Q68DK7 614 aa13.21□□□□□ -0.29
SHMT2-201ENST00000328923 ZNF772Q68DY9 489 aaPredicted RBP13.21□□□□□ -0.29
SHMT2-201ENST00000328923 CABLES1Q8TDN4 633 aa13.21□□□□□ -0.29
SHMT2-201ENST00000328923 OSBPL1AQ9BXW6 950 aa13.21□□□□□ -0.29
SHMT2-201ENST00000328923 PCMTD2Q9NV79 361 aa13.21□□□□□ -0.29
SHMT2-201ENST00000328923 ANKIB1Q9P2G1 1089 aa13.21□□□□□ -0.29
SHMT2-201ENST00000328923 LAMA4Q16363 1823 aa13.21□□□□□ -0.29
SHMT2-201ENST00000328923 DPPA5A6NC42 116 aa13.21□□□□□ -0.29
SHMT2-201ENST00000328923 RNMTO43148 476 aaKnown RBP13.21□□□□□ -0.29
SHMT2-201ENST00000328923 EIF4A1P60842 406 aaKnown RBP13.21□□□□□ -0.29
SHMT2-201ENST00000328923 TEFQ10587 303 aa13.21□□□□□ -0.29
SHMT2-201ENST00000328923 G3BP1Q13283 466 aaKnown RBP eCLIP13.21□□□□□ -0.292e-7■■■□□ 18
SHMT2-201ENST00000328923 HIBCHQ6NVY1 386 aaPredicted RBP13.21□□□□□ -0.29
SHMT2-201ENST00000328923 CCNI2Q6ZMN8 369 aaPredicted RBP13.21□□□□□ -0.29
SHMT2-201ENST00000328923 SND1Q7KZF4 910 aaKnown RBP eCLIP13.21□□□□□ -0.292e-6■■□□□ 11.8
SHMT2-201ENST00000328923 OVOS2A0A0G2JMS6 1433 aa13.21□□□□□ -0.3
SHMT2-201ENST00000328923 E7EVH7 732 aa13.2□□□□□ -0.3
SHMT2-201ENST00000328923 PPP1R37O75864 691 aa13.2□□□□□ -0.3
SHMT2-201ENST00000328923 AMPD2Q01433 879 aa13.2□□□□□ -0.3
SHMT2-201ENST00000328923 MPP3Q13368 585 aa13.2□□□□□ -0.3
SHMT2-201ENST00000328923 TEKT4Q8WW24 435 aa13.2□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 44.9 ms