RNA–Protein interactions for RNA: ENST00000313860.11

LIMCH1-201, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMCH1, Length 6,165 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-201ENST00000313860 PHF23Q9BUL5 403 aaPredicted RBP8.37□□□□□ -1.07
LIMCH1-201ENST00000313860 SYNDIG1Q9H7V2 258 aa8.37□□□□□ -1.07
LIMCH1-201ENST00000313860 FRMD4AQ9P2Q2 1039 aaPredicted RBP8.37□□□□□ -1.07
LIMCH1-201ENST00000313860 RUSC2Q8N2Y8 1516 aa8.37□□□□□ -1.07
LIMCH1-201ENST00000313860 GNB5O14775 395 aa8.36□□□□□ -1.07
LIMCH1-201ENST00000313860 RGS10O43665 173 aa8.36□□□□□ -1.07
LIMCH1-201ENST00000313860 EPN2O95208 641 aa8.36□□□□□ -1.07
LIMCH1-201ENST00000313860 BAG3O95817 575 aa8.36□□□□□ -1.07
LIMCH1-201ENST00000313860 PIP4K2BP78356 416 aa8.36□□□□□ -1.07
LIMCH1-201ENST00000313860 KRT81Q14533 505 aa8.36□□□□□ -1.07
LIMCH1-201ENST00000313860 HMBOX1Q6NT76 420 aa8.36□□□□□ -1.07
LIMCH1-201ENST00000313860 CCDC103Q8IW40 242 aa8.36□□□□□ -1.07
LIMCH1-201ENST00000313860 ZNF579Q8NAF0 562 aaKnown RBP8.36□□□□□ -1.07
LIMCH1-201ENST00000313860 BRF1Q92994 677 aa8.36□□□□□ -1.07
LIMCH1-201ENST00000313860 NAF1Q96HR8 494 aaKnown RBP8.36□□□□□ -1.07
LIMCH1-201ENST00000313860 RIOK2Q9BVS4 552 aaKnown RBP8.36□□□□□ -1.07
LIMCH1-201ENST00000313860 RBSNQ9H1K0 784 aa8.36□□□□□ -1.07
LIMCH1-201ENST00000313860 RGS20O76081 388 aa8.36□□□□□ -1.07
LIMCH1-201ENST00000313860 PGM3O95394 542 aa8.36□□□□□ -1.07
LIMCH1-201ENST00000313860 TCP1P17987 556 aaKnown RBP8.36□□□□□ -1.07
LIMCH1-201ENST00000313860 WEE1P30291 646 aa8.36□□□□□ -1.07
LIMCH1-201ENST00000313860 SGSM1Q2NKQ1 1148 aa8.36□□□□□ -1.07
LIMCH1-201ENST00000313860 SLC25A24Q6NUK1 477 aa8.36□□□□□ -1.07
LIMCH1-201ENST00000313860 TRIM69Q86WT6 500 aa8.36□□□□□ -1.07
LIMCH1-201ENST00000313860 FBXL13Q8NEE6 735 aa8.36□□□□□ -1.07
LIMCH1-201ENST00000313860 SPDYE1Q8NFV5 336 aaPredicted RBP8.36□□□□□ -1.07
LIMCH1-201ENST00000313860 THUMPD2Q9BTF0 503 aaKnown RBP8.36□□□□□ -1.07
LIMCH1-201ENST00000313860 WIZO95785 1651 aa8.36□□□□□ -1.07
LIMCH1-201ENST00000313860 MAPKBP1O60336 1514 aa8.36□□□□□ -1.07
LIMCH1-201ENST00000313860 A0A1W2PRG6 482 aa8.36□□□□□ -1.07
LIMCH1-201ENST00000313860 CLASP2O75122 1294 aaKnown RBP8.36□□□□□ -1.07
LIMCH1-201ENST00000313860 ZNF189O75820 626 aaPredicted RBP8.36□□□□□ -1.07
LIMCH1-201ENST00000313860 IFNA14P01570 189 aa8.36□□□□□ -1.07
LIMCH1-201ENST00000313860 AMPHP49418 695 aa8.36□□□□□ -1.07
LIMCH1-201ENST00000313860 PPP2R5EQ16537 467 aa8.36□□□□□ -1.07
LIMCH1-201ENST00000313860 C1orf141Q5JVX7 400 aa8.36□□□□□ -1.07
LIMCH1-201ENST00000313860 ULK3Q6PHR2 472 aa8.36□□□□□ -1.07
LIMCH1-201ENST00000313860 FAM9CQ8IZT9 166 aa8.36□□□□□ -1.07
LIMCH1-201ENST00000313860 CENPTQ96BT3 561 aa8.36□□□□□ -1.07
LIMCH1-201ENST00000313860 BRD8Q9H0E9 1235 aa8.36□□□□□ -1.07
LIMCH1-201ENST00000313860 EIF2AK3Q9NZJ5 1116 aaKnown RBP8.36□□□□□ -1.07
LIMCH1-201ENST00000313860 GUCA1BQ9UMX6 200 aa8.36□□□□□ -1.07
LIMCH1-201ENST00000313860 AKAP2Q9Y2D5 859 aa8.36□□□□□ -1.07
LIMCH1-201ENST00000313860 A8MXQ7 604 aa8.36□□□□□ -1.07
LIMCH1-201ENST00000313860 ZBTB39O15060 712 aa8.36□□□□□ -1.07
LIMCH1-201ENST00000313860 S100A6P06703 90 aa8.36□□□□□ -1.07
LIMCH1-201ENST00000313860 MX1P20591 662 aa8.36□□□□□ -1.07
LIMCH1-201ENST00000313860 SNAP25P60880 206 aa8.36□□□□□ -1.07
LIMCH1-201ENST00000313860 C2orf76Q3KRA6 126 aa8.36□□□□□ -1.07
LIMCH1-201ENST00000313860 BSPRYQ5W0U4 402 aa8.36□□□□□ -1.07
LIMCH1-201ENST00000313860 ZNF449Q6P9G9 518 aa8.36□□□□□ -1.07
LIMCH1-201ENST00000313860 ANGPTL8Q6UXH0 198 aa8.36□□□□□ -1.07
LIMCH1-201ENST00000313860 PLEKHA4Q9H4M7 779 aa8.36□□□□□ -1.07
LIMCH1-201ENST00000313860 CDC16Q13042 620 aa8.36□□□□□ -1.07
LIMCH1-201ENST00000313860 PRPF40BQ6NWY9 871 aaKnown RBP8.36□□□□□ -1.07
LIMCH1-201ENST00000313860 CDC26Q8NHZ8 85 aa8.36□□□□□ -1.07
LIMCH1-201ENST00000313860 RAPGEF4Q8WZA2 1011 aa8.36□□□□□ -1.07
LIMCH1-201ENST00000313860 FIS1Q9Y3D6 152 aa8.36□□□□□ -1.07
LIMCH1-201ENST00000313860 UBXN8O00124 270 aa8.35□□□□□ -1.07
LIMCH1-201ENST00000313860 ITGA3P26006 1051 aa8.35□□□□□ -1.07
LIMCH1-201ENST00000313860 GUCY1B3Q02153 619 aa8.35□□□□□ -1.07
LIMCH1-201ENST00000313860 SPAG1Q07617 926 aa8.35□□□□□ -1.07
LIMCH1-201ENST00000313860 FERMT3Q86UX7 667 aa8.35□□□□□ -1.07
LIMCH1-201ENST00000313860 STX19Q8N4C7 294 aa8.35□□□□□ -1.07
LIMCH1-201ENST00000313860 TTC30BQ8N4P2 665 aa8.35□□□□□ -1.07
LIMCH1-201ENST00000313860 UXS1Q8NBZ7 420 aa8.35□□□□□ -1.07
LIMCH1-201ENST00000313860 GATAD2BQ8WXI9 593 aa8.35□□□□□ -1.07
LIMCH1-201ENST00000313860 PANK2Q9BZ23 570 aa8.35□□□□□ -1.07
LIMCH1-201ENST00000313860 PARVGQ9HBI0 331 aa8.35□□□□□ -1.07
LIMCH1-201ENST00000313860 RPGRIP1LQ68CZ1 1315 aa8.35□□□□□ -1.07
LIMCH1-201ENST00000313860 LINC00854A0A1B0GVQ3 168 aa8.35□□□□□ -1.07
LIMCH1-201ENST00000313860 EFCAB8A8MWE9 144 aa8.35□□□□□ -1.07
LIMCH1-201ENST00000313860 SART1O43290 800 aaKnown RBP8.35□□□□□ -1.07
LIMCH1-201ENST00000313860 IDEP14735 1019 aa8.35□□□□□ -1.07
LIMCH1-201ENST00000313860 MSH2P43246 934 aa8.35□□□□□ -1.07
LIMCH1-201ENST00000313860 MYBPC2Q14324 1141 aa8.35□□□□□ -1.07
LIMCH1-201ENST00000313860 TXNDC11Q6PKC3 985 aa8.35□□□□□ -1.07
LIMCH1-201ENST00000313860 MFN1Q8IWA4 741 aa8.35□□□□□ -1.07
LIMCH1-201ENST00000313860 MCUQ8NE86 351 aa8.35□□□□□ -1.07
LIMCH1-201ENST00000313860 SLC13A4Q9UKG4 626 aa8.35□□□□□ -1.07
LIMCH1-201ENST00000313860 SPEF1Q9Y4P9 236 aa8.35□□□□□ -1.07
LIMCH1-201ENST00000313860 UBE4BO95155 1302 aa8.35□□□□□ -1.07
LIMCH1-201ENST00000313860 PTPN6P29350 595 aa8.35□□□□□ -1.07
LIMCH1-201ENST00000313860 TNNC1P63316 161 aa8.35□□□□□ -1.07
LIMCH1-201ENST00000313860 PPIDQ08752 370 aaKnown RBP8.35□□□□□ -1.07
LIMCH1-201ENST00000313860 ZNF569Q5MCW4 686 aa8.35□□□□□ -1.07
LIMCH1-201ENST00000313860 CNNM3Q8NE01 707 aa8.35□□□□□ -1.07
LIMCH1-201ENST00000313860 EPS15L1Q9UBC2 864 aa8.35□□□□□ -1.07
LIMCH1-201ENST00000313860 SUPT3HB4E1H0 165 aa8.35□□□□□ -1.07
LIMCH1-201ENST00000313860 TEX28O15482 410 aa8.35□□□□□ -1.07
LIMCH1-201ENST00000313860 HSPA9P38646 679 aaKnown RBP8.35□□□□□ -1.07
LIMCH1-201ENST00000313860 PHKA1P46020 1223 aa8.35□□□□□ -1.07
LIMCH1-201ENST00000313860 SEL1L2Q5TEA6 688 aa8.35□□□□□ -1.07
LIMCH1-201ENST00000313860 KLHL14Q9P2G3 628 aa8.35□□□□□ -1.07
LIMCH1-201ENST00000313860 SNX5Q9Y5X3 404 aa8.35□□□□□ -1.07
LIMCH1-201ENST00000313860 DLGAP3O95886 979 aa8.35□□□□□ -1.07
LIMCH1-201ENST00000313860 STX2P32856 288 aa8.35□□□□□ -1.07
LIMCH1-201ENST00000313860 KRT9P35527 623 aa8.35□□□□□ -1.07
LIMCH1-201ENST00000313860 ATP12AP54707 1039 aa8.35□□□□□ -1.07
LIMCH1-201ENST00000313860 TTF1Q15361 905 aaPredicted RBP8.35□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms