RNA–Protein interactions for RNA: ENST00000311351.8

LSM1-201, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM1, Length 1,147 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-201ENST00000311351 SPATC1LQ9H0A9 340 aa19.39■□□□□ 0.69
LSM1-201ENST00000311351 CLIP2Q9UDT6 1046 aa19.39■□□□□ 0.69
LSM1-201ENST00000311351 TSPY3P0CV98 308 aa19.38■□□□□ 0.69
LSM1-201ENST00000311351 TSPY8P0CW00 308 aa19.38■□□□□ 0.69
LSM1-201ENST00000311351 HSPD1P10809 573 aaKnown RBP19.38■□□□□ 0.69
LSM1-201ENST00000311351 RGS2P41220 211 aa19.38■□□□□ 0.69
LSM1-201ENST00000311351 TFAP4Q01664 338 aa19.38■□□□□ 0.69
LSM1-201ENST00000311351 MAP2K5Q13163 448 aa19.38■□□□□ 0.69
LSM1-201ENST00000311351 TICAM2Q86XR7 235 aa19.38■□□□□ 0.69
LSM1-201ENST00000311351 NEDD1Q8NHV4 660 aa19.38■□□□□ 0.69
LSM1-201ENST00000311351 DEFB118Q96PH6 123 aa19.38■□□□□ 0.69
LSM1-201ENST00000311351 APBA2Q99767 749 aa19.38■□□□□ 0.69
LSM1-201ENST00000311351 XRN2Q9H0D6 950 aaKnown RBP eCLIP19.38■□□□□ 0.69
LSM1-201ENST00000311351 PAK6Q9NQU5 681 aaPredicted RBP19.38■□□□□ 0.69
LSM1-201ENST00000311351 MTMR4Q9NYA4 1195 aa19.38■□□□□ 0.69
LSM1-201ENST00000311351 F5H6K3 240 aa19.37■□□□□ 0.69
LSM1-201ENST00000311351 FGAP02671 866 aa19.37■□□□□ 0.69
LSM1-201ENST00000311351 XRCC5P13010 732 aaKnown RBP19.37■□□□□ 0.69
LSM1-201ENST00000311351 ZKSCAN1P17029 563 aaPredicted RBP19.37■□□□□ 0.69
LSM1-201ENST00000311351 PTPREP23469 700 aa19.37■□□□□ 0.69
LSM1-201ENST00000311351 KLRC3Q07444 240 aa19.37■□□□□ 0.69
LSM1-201ENST00000311351 GRB14Q14449 540 aa19.37■□□□□ 0.69
LSM1-201ENST00000311351 PLS1Q14651 629 aa19.37■□□□□ 0.69
LSM1-201ENST00000311351 ALX1Q15699 326 aa19.37■□□□□ 0.69
LSM1-201ENST00000311351 MB21D1Q8N884 522 aa19.37■□□□□ 0.69
LSM1-201ENST00000311351 NKX2-3Q8TAU0 364 aa19.37■□□□□ 0.69
LSM1-201ENST00000311351 ANAPC4Q9UJX5 808 aa19.37■□□□□ 0.69
LSM1-201ENST00000311351 IVNS1ABPQ9Y6Y0 642 aa19.37■□□□□ 0.69
LSM1-201ENST00000311351 TTLL1O95922 423 aa19.36■□□□□ 0.69
LSM1-201ENST00000311351 PRKAR2AP13861 404 aaKnown RBP19.36■□□□□ 0.69
LSM1-201ENST00000311351 ERCC3P19447 782 aa19.36■□□□□ 0.69
LSM1-201ENST00000311351 TMEM132BQ14DG7 1078 aa19.36■□□□□ 0.69
LSM1-201ENST00000311351 CWC27Q6UX04 472 aaKnown RBP19.36■□□□□ 0.69
LSM1-201ENST00000311351 DIAPH3Q9NSV4 1193 aa19.36■□□□□ 0.69
LSM1-201ENST00000311351 PPP1R9AQ9ULJ8 1098 aa19.36■□□□□ 0.69
LSM1-201ENST00000311351 FRMPD3Q5JV73 1810 aa19.36■□□□□ 0.69
LSM1-201ENST00000311351 ZMYM6O95789 1325 aa19.35■□□□□ 0.69
LSM1-201ENST00000311351 SLC15A5A6NIM6 579 aa19.35■□□□□ 0.69
LSM1-201ENST00000311351 TSPY2A6NKD2 308 aa19.35■□□□□ 0.69
LSM1-201ENST00000311351 NMT2O60551 498 aa19.35■□□□□ 0.69
LSM1-201ENST00000311351 SGPL1O95470 568 aa19.35■□□□□ 0.69
LSM1-201ENST00000311351 GSPT1P15170 499 aaKnown RBP19.35■□□□□ 0.69
LSM1-201ENST00000311351 HAND2P61296 217 aa19.35■□□□□ 0.69
LSM1-201ENST00000311351 NCAPG2Q86XI2 1143 aa19.35■□□□□ 0.69
LSM1-201ENST00000311351 CEP290O15078 2479 aa19.35■□□□□ 0.69
LSM1-201ENST00000311351 ZNFX1Q9P2E3 1918 aaKnown RBP19.35■□□□□ 0.69
LSM1-201ENST00000311351 VWA5AO00534 786 aa19.34■□□□□ 0.69
LSM1-201ENST00000311351 TTC22Q5TAA0 569 aa19.34■□□□□ 0.69
LSM1-201ENST00000311351 MAP3K21Q5TCX8 1036 aa19.34■□□□□ 0.69
LSM1-201ENST00000311351 PRPF38BQ5VTL8 546 aaKnown RBP19.34■□□□□ 0.69
LSM1-201ENST00000311351 SHCBP1Q8NEM2 672 aa19.34■□□□□ 0.69
LSM1-201ENST00000311351 NPLOC4Q8TAT6 608 aa19.34■□□□□ 0.69
LSM1-201ENST00000311351 MKL1Q969V6 931 aa19.34■□□□□ 0.69
LSM1-201ENST00000311351 CHMP4CQ96CF2 233 aa19.34■□□□□ 0.69
LSM1-201ENST00000311351 SLF1Q9BQI6 1058 aa19.34■□□□□ 0.69
LSM1-201ENST00000311351 NBPF3Q9H094 633 aa19.34■□□□□ 0.69
LSM1-201ENST00000311351 TOMM22Q9NS69 142 aa19.34■□□□□ 0.69
LSM1-201ENST00000311351 FLRT1Q9NZU1 646 aa19.34■□□□□ 0.69
LSM1-201ENST00000311351 ADAMTS5Q9UNA0 930 aa19.34■□□□□ 0.69
LSM1-201ENST00000311351 RPTORQ8N122 1335 aa19.33■□□□□ 0.69
LSM1-201ENST00000311351 ORC4O43929 436 aa19.33■□□□□ 0.68
LSM1-201ENST00000311351 RANBP6O60518 1105 aaKnown RBP19.33■□□□□ 0.68
LSM1-201ENST00000311351 FARP2O94887 1054 aaPredicted RBP19.33■□□□□ 0.68
LSM1-201ENST00000311351 ADORA2AP29274 412 aa19.33■□□□□ 0.68
LSM1-201ENST00000311351 CACNB2Q08289 660 aaPredicted RBP19.33■□□□□ 0.68
LSM1-201ENST00000311351 RRP12Q5JTH9 1297 aaKnown RBP19.33■□□□□ 0.68
LSM1-201ENST00000311351 RASGRP2Q7LDG7 609 aa19.33■□□□□ 0.68
LSM1-201ENST00000311351 UBE2Q1Q7Z7E8 422 aa19.33■□□□□ 0.68
LSM1-201ENST00000311351 TRMT44Q8IYL2 757 aaKnown RBP19.33■□□□□ 0.68
LSM1-201ENST00000311351 GMCL1P1Q8NEA9 526 aa19.33■□□□□ 0.68
LSM1-201ENST00000311351 REPS2Q8NFH8 660 aa19.33■□□□□ 0.68
LSM1-201ENST00000311351 HMX1Q9NP08 348 aaPredicted RBP19.33■□□□□ 0.68
LSM1-201ENST00000311351 IL17RBQ9NRM6 502 aa19.33■□□□□ 0.68
LSM1-201ENST00000311351 ZNF214Q9UL59 606 aaPredicted RBP19.33■□□□□ 0.68
LSM1-201ENST00000311351 PLXNA1Q9UIW2 1896 aa19.33■□□□□ 0.68
LSM1-201ENST00000311351 TFRCP02786 760 aaKnown RBP19.32■□□□□ 0.68
LSM1-201ENST00000311351 MFAP1P55081 439 aaKnown RBP19.32■□□□□ 0.68
LSM1-201ENST00000311351 C1QBPQ07021 282 aaKnown RBP19.32■□□□□ 0.68
LSM1-201ENST00000311351 SLFN13Q68D06 897 aa19.32■□□□□ 0.68
LSM1-201ENST00000311351 TBC1D10CQ8IV04 446 aa19.32■□□□□ 0.68
LSM1-201ENST00000311351 CRISPLD2Q9H0B8 497 aa19.32■□□□□ 0.68
LSM1-201ENST00000311351 IL25Q9H293 177 aa19.32■□□□□ 0.68
LSM1-201ENST00000311351 SYNPO2Q9UMS6 1093 aa19.32■□□□□ 0.68
LSM1-201ENST00000311351 STX8Q9UNK0 236 aa19.32■□□□□ 0.68
LSM1-201ENST00000311351 HIP1O00291 1037 aa19.31■□□□□ 0.68
LSM1-201ENST00000311351 HOXC6P09630 235 aa19.31■□□□□ 0.68
LSM1-201ENST00000311351 FGRP09769 529 aa19.31■□□□□ 0.68
LSM1-201ENST00000311351 CCND3P30281 292 aaPredicted RBP19.31■□□□□ 0.68
LSM1-201ENST00000311351 MROH8Q9H579 483 aa19.31■□□□□ 0.68
LSM1-201ENST00000311351 ISY1Q9ULR0 285 aaKnown RBP19.31■□□□□ 0.68
LSM1-201ENST00000311351 ALPK3Q96L96 1907 aa19.31■□□□□ 0.68
LSM1-201ENST00000311351 COBLO75128 1261 aa19.3■□□□□ 0.68
LSM1-201ENST00000311351 STAT3P40763 770 aa19.3■□□□□ 0.68
LSM1-201ENST00000311351 RIOX2Q8IUF8 465 aa19.3■□□□□ 0.68
LSM1-201ENST00000311351 KIFC2Q96AC6 838 aa19.3■□□□□ 0.68
LSM1-201ENST00000311351 NEDD4P46934 1319 aa19.29■□□□□ 0.68
LSM1-201ENST00000311351 SLC25A27O95847 323 aa19.29■□□□□ 0.68
LSM1-201ENST00000311351 BMP3P12645 472 aa19.29■□□□□ 0.68
LSM1-201ENST00000311351 CYP2C19P33261 490 aa19.29■□□□□ 0.68
LSM1-201ENST00000311351 MFSD14CQ5VZR4 134 aa19.29■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 44.6 ms