RNA–Protein interactions for RNA: ENST00000306726.6

PTPN9-201, Transcript of protein tyrosine phosphatase, non-receptor type 9, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene PTPN9, Length 3,862 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9-201ENST00000306726 BRMS1Q9HCU9 246 aa16.46■□□□□ 0.23
PTPN9-201ENST00000306726 MAGEC2Q9UBF1 373 aaPredicted RBP16.46■□□□□ 0.23
PTPN9-201ENST00000306726 UBN2Q6ZU65 1347 aa16.46■□□□□ 0.23
PTPN9-201ENST00000306726 USP5P45974 858 aa16.45■□□□□ 0.22
PTPN9-201ENST00000306726 GYG1P46976 350 aa16.45■□□□□ 0.22
PTPN9-201ENST00000306726 TRIM65Q6PJ69 517 aa16.45■□□□□ 0.22
PTPN9-201ENST00000306726 NOA1Q8NC60 698 aaKnown RBP16.45■□□□□ 0.22
PTPN9-201ENST00000306726 CHP1Q99653 195 aa16.45■□□□□ 0.22
PTPN9-201ENST00000306726 NIP7Q9Y221 180 aaKnown RBP eCLIP16.45■□□□□ 0.22
PTPN9-201ENST00000306726 SH3TC1Q8TE82 1336 aa16.45■□□□□ 0.22
PTPN9-201ENST00000306726 PP2D1A8MPX8 630 aa16.45■□□□□ 0.22
PTPN9-201ENST00000306726 TSGA10IPQ3SY00 556 aa16.45■□□□□ 0.22
PTPN9-201ENST00000306726 IFIT1BQ5T764 474 aaKnown RBP16.45■□□□□ 0.22
PTPN9-201ENST00000306726 KCTD16Q68DU8 428 aa16.45■□□□□ 0.22
PTPN9-201ENST00000306726 PNKPQ96T60 521 aa16.45■□□□□ 0.22
PTPN9-201ENST00000306726 RASSF4Q9H2L5 321 aa16.45■□□□□ 0.22
PTPN9-201ENST00000306726 MTIF2P46199 727 aaKnown RBP16.45■□□□□ 0.22
PTPN9-201ENST00000306726 SLC7A5Q01650 507 aa16.45■□□□□ 0.22
PTPN9-201ENST00000306726 CCDC96Q2M329 555 aa16.45■□□□□ 0.22
PTPN9-201ENST00000306726 TC2NQ8N9U0 490 aa16.45■□□□□ 0.22
PTPN9-201ENST00000306726 PLEKHA8P1O95397 391 aa16.45■□□□□ 0.22
PTPN9-201ENST00000306726 FXR1P51114 621 aaKnown RBP eCLIP16.45■□□□□ 0.22
PTPN9-201ENST00000306726 VSNL1P62760 191 aa16.45■□□□□ 0.22
PTPN9-201ENST00000306726 DYNLL1P63167 89 aaKnown RBP16.45■□□□□ 0.22
PTPN9-201ENST00000306726 INTS13Q9NVM9 706 aa16.45■□□□□ 0.22
PTPN9-201ENST00000306726 BCCIPQ9P287 314 aaKnown RBP eCLIP16.45■□□□□ 0.22
PTPN9-201ENST00000306726 ZFYP08048 801 aaPredicted RBP16.44■□□□□ 0.22
PTPN9-201ENST00000306726 PPARAQ07869 468 aa16.44■□□□□ 0.22
PTPN9-201ENST00000306726 CCDC181Q5TID7 509 aa16.44■□□□□ 0.22
PTPN9-201ENST00000306726 ZKSCAN7Q9P0L1 754 aaPredicted RBP16.44■□□□□ 0.22
PTPN9-201ENST00000306726 H2AFXP16104 143 aaPredicted RBP16.44■□□□□ 0.22
PTPN9-201ENST00000306726 GPR161Q8N6U8 529 aaKnown RBP16.44■□□□□ 0.22
PTPN9-201ENST00000306726 PROCA1Q8NCQ7 364 aaPredicted RBP16.44■□□□□ 0.22
PTPN9-201ENST00000306726 UPF1Q92900 1129 aaKnown RBP eCLIP16.44■□□□□ 0.221e-6■■■□□ 15.2
PTPN9-201ENST00000306726 LAMB2P55268 1798 aa16.44■□□□□ 0.22
PTPN9-201ENST00000306726 ZMYM6O95789 1325 aa16.44■□□□□ 0.22
PTPN9-201ENST00000306726 CYP2C19P33261 490 aa16.44■□□□□ 0.22
PTPN9-201ENST00000306726 ATP1A2P50993 1020 aa16.44■□□□□ 0.22
PTPN9-201ENST00000306726 PTGDRQ13258 359 aa16.44■□□□□ 0.22
PTPN9-201ENST00000306726 TPTE2Q6XPS3 522 aa16.44■□□□□ 0.22
PTPN9-201ENST00000306726 SMCR8Q8TEV9 937 aaPredicted RBP16.44■□□□□ 0.22
PTPN9-201ENST00000306726 IFT81Q8WYA0 676 aa16.44■□□□□ 0.22
PTPN9-201ENST00000306726 SAMM50Q9Y512 469 aa16.44■□□□□ 0.22
PTPN9-201ENST00000306726 SH2B2O14492 632 aaPredicted RBP16.43■□□□□ 0.22
PTPN9-201ENST00000306726 TDRD12Q587J7 1177 aaKnown RBP16.43■□□□□ 0.22
PTPN9-201ENST00000306726 HPS3Q969F9 1004 aa16.43■□□□□ 0.22
PTPN9-201ENST00000306726 FAM204AQ9H8W3 233 aa16.43■□□□□ 0.22
PTPN9-201ENST00000306726 MYO1CO00159 1063 aa16.43■□□□□ 0.22
PTPN9-201ENST00000306726 ZNF185O15231 689 aa16.43■□□□□ 0.22
PTPN9-201ENST00000306726 ZNF654Q8IZM8 581 aa16.43■□□□□ 0.22
PTPN9-201ENST00000306726 MMRN2Q9H8L6 949 aa16.43■□□□□ 0.22
PTPN9-201ENST00000306726 GOLGA8HP0CJ92 632 aa16.43■□□□□ 0.22
PTPN9-201ENST00000306726 TXLNAP40222 546 aa16.43■□□□□ 0.22
PTPN9-201ENST00000306726 LIG3P49916 1009 aa16.43■□□□□ 0.22
PTPN9-201ENST00000306726 ATL3Q6DD88 541 aa16.43■□□□□ 0.22
PTPN9-201ENST00000306726 CCDC148Q8NFR7 591 aa16.43■□□□□ 0.22
PTPN9-201ENST00000306726 FBXO3Q9UK99 471 aa16.43■□□□□ 0.22
PTPN9-201ENST00000306726 STAT6P42226 847 aa16.42■□□□□ 0.22
PTPN9-201ENST00000306726 EVX2Q03828 476 aa16.42■□□□□ 0.22
PTPN9-201ENST00000306726 TSPY2A6NKD2 308 aa16.42■□□□□ 0.22
PTPN9-201ENST00000306726 CD44P16070 742 aaKnown RBP16.42■□□□□ 0.22
PTPN9-201ENST00000306726 KANSL2Q9H9L4 492 aa16.42■□□□□ 0.22
PTPN9-201ENST00000306726 FAM207AQ9NSI2 230 aaPredicted RBP16.42■□□□□ 0.22
PTPN9-201ENST00000306726 ZNHIT6Q9NWK9 470 aaKnown RBP16.42■□□□□ 0.22
PTPN9-201ENST00000306726 CLSTN1O94985 981 aa16.42■□□□□ 0.22
PTPN9-201ENST00000306726 RABL6Q3YEC7 729 aaPredicted RBP16.42■□□□□ 0.22
PTPN9-201ENST00000306726 EARS2Q5JPH6 523 aaKnown RBP16.42■□□□□ 0.22
PTPN9-201ENST00000306726 HDXQ7Z353 690 aa16.42■□□□□ 0.22
PTPN9-201ENST00000306726 HEATR3Q7Z4Q2 680 aa16.42■□□□□ 0.22
PTPN9-201ENST00000306726 CATIPQ7Z7H3 387 aa16.42■□□□□ 0.22
PTPN9-201ENST00000306726 NAPGQ99747 312 aaPredicted RBP16.42■□□□□ 0.22
PTPN9-201ENST00000306726 PDE8AO60658 829 aa16.41■□□□□ 0.22
PTPN9-201ENST00000306726 UBA7P41226 1012 aa16.41■□□□□ 0.22
PTPN9-201ENST00000306726 SYCP1Q15431 976 aa16.41■□□□□ 0.22
PTPN9-201ENST00000306726 KSR1Q8IVT5 923 aa16.41■□□□□ 0.22
PTPN9-201ENST00000306726 SPATA5Q8NB90 893 aa16.41■□□□□ 0.22
PTPN9-201ENST00000306726 FANCBQ8NB91 859 aa16.41■□□□□ 0.22
PTPN9-201ENST00000306726 CTCFLQ8NI51 663 aaPredicted RBP16.41■□□□□ 0.22
PTPN9-201ENST00000306726 NELFBQ8WX92 580 aa16.41■□□□□ 0.22
PTPN9-201ENST00000306726 WASF1Q92558 559 aa16.41■□□□□ 0.22
PTPN9-201ENST00000306726 TNKSO95271 1327 aa16.41■□□□□ 0.22
PTPN9-201ENST00000306726 AKNAD1Q5T1N1 836 aa16.41■□□□□ 0.22
PTPN9-201ENST00000306726 L2HGDHQ9H9P8 463 aa16.41■□□□□ 0.22
PTPN9-201ENST00000306726 RRP15Q9Y3B9 282 aaKnown RBP16.41■□□□□ 0.22
PTPN9-201ENST00000306726 RTL9Q8NET4 1388 aa16.41■□□□□ 0.22
PTPN9-201ENST00000306726 PNPLA7Q6ZV29 1317 aa16.41■□□□□ 0.22
PTPN9-201ENST00000306726 CASP7P55210 303 aa16.41■□□□□ 0.22
PTPN9-201ENST00000306726 RNF187Q5TA31 235 aaPredicted RBP16.41■□□□□ 0.22
PTPN9-201ENST00000306726 RESP18Q5W5W9 173 aa16.41■□□□□ 0.22
PTPN9-201ENST00000306726 TBC1D7Q9P0N9 293 aa16.41■□□□□ 0.22
PTPN9-201ENST00000306726 IKBKBO14920 756 aa16.4■□□□□ 0.22
PTPN9-201ENST00000306726 GYS1P13807 737 aa16.4■□□□□ 0.22
PTPN9-201ENST00000306726 SLC5A1P13866 664 aa16.4■□□□□ 0.22
PTPN9-201ENST00000306726 ADD2P35612 726 aa16.4■□□□□ 0.22
PTPN9-201ENST00000306726 CUL4BQ13620 913 aa16.4■□□□□ 0.22
PTPN9-201ENST00000306726 SLC10A5Q5PT55 438 aa16.4■□□□□ 0.22
PTPN9-201ENST00000306726 NBPF5PQ86XG9 351 aaPredicted RBP16.4■□□□□ 0.22
PTPN9-201ENST00000306726 MLKLQ8NB16 471 aa16.4■□□□□ 0.22
PTPN9-201ENST00000306726 AATFQ9NY61 560 aaKnown RBP eCLIP16.4■□□□□ 0.22
PTPN9-201ENST00000306726 TUBGCP6Q96RT7 1819 aa16.4■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms