RNA–Protein interactions for RNA: ENST00000292476.9

CPSF4-201, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CPSF4, Length 1,691 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-201ENST00000292476 CDC25BP30305 580 aa19.3■□□□□ 0.68
CPSF4-201ENST00000292476 NOVP48745 357 aa19.3■□□□□ 0.68
CPSF4-201ENST00000292476 CCAR1Q8IX12 1150 aaKnown RBP19.3■□□□□ 0.68
CPSF4-201ENST00000292476 USP28Q96RU2 1077 aa19.3■□□□□ 0.68
CPSF4-201ENST00000292476 YEATS4O95619 227 aa19.3■□□□□ 0.68
CPSF4-201ENST00000292476 ZNF165P49910 485 aa19.3■□□□□ 0.68
CPSF4-201ENST00000292476 TCP10Q12799 353 aa19.3■□□□□ 0.68
CPSF4-201ENST00000292476 STX1AQ16623 288 aa19.3■□□□□ 0.68
CPSF4-201ENST00000292476 FAM151AQ8WW52 585 aa19.3■□□□□ 0.68
CPSF4-201ENST00000292476 PHKBQ93100 1093 aa19.3■□□□□ 0.68
CPSF4-201ENST00000292476 PRPF3O43395 683 aaKnown RBP19.29■□□□□ 0.68
CPSF4-201ENST00000292476 SPDYE2Q495Y8 402 aa19.29■□□□□ 0.68
CPSF4-201ENST00000292476 SARM1Q6SZW1 724 aa19.29■□□□□ 0.68
CPSF4-201ENST00000292476 TMTC3Q6ZXV5 915 aa19.29■□□□□ 0.68
CPSF4-201ENST00000292476 NBPF11Q86T75 865 aa19.29■□□□□ 0.68
CPSF4-201ENST00000292476 FAM83AQ86UY5 434 aa19.29■□□□□ 0.68
CPSF4-201ENST00000292476 LUZP1Q86V48 1076 aa19.29■□□□□ 0.68
CPSF4-201ENST00000292476 METTL16Q86W50 562 aaKnown RBP19.29■□□□□ 0.68
CPSF4-201ENST00000292476 PLA2G4DQ86XP0 818 aa19.29■□□□□ 0.68
CPSF4-201ENST00000292476 ENGASEQ8NFI3 743 aa19.29■□□□□ 0.68
CPSF4-201ENST00000292476 KCNG4Q8TDN1 519 aa19.29■□□□□ 0.68
CPSF4-201ENST00000292476 TMEM47Q9BQJ4 181 aa19.29■□□□□ 0.68
CPSF4-201ENST00000292476 TTC12Q9H892 705 aaPredicted RBP19.29■□□□□ 0.68
CPSF4-201ENST00000292476 POLR3EQ9NVU0 708 aa19.29■□□□□ 0.68
CPSF4-201ENST00000292476 ZNF70Q9UC06 446 aaPredicted RBP19.29■□□□□ 0.68
CPSF4-201ENST00000292476 HERC5Q9UII4 1024 aaKnown RBP19.29■□□□□ 0.68
CPSF4-201ENST00000292476 KINO60870 393 aaKnown RBP19.28■□□□□ 0.68
CPSF4-201ENST00000292476 TNNI2P48788 182 aa19.28■□□□□ 0.68
CPSF4-201ENST00000292476 CACNB3P54284 484 aa19.28■□□□□ 0.68
CPSF4-201ENST00000292476 PLCB2Q00722 1185 aa19.28■□□□□ 0.68
CPSF4-201ENST00000292476 SAFBQ15424 915 aaKnown RBP eCLIP19.28■□□□□ 0.68
CPSF4-201ENST00000292476 KIF4BQ2VIQ3 1234 aa19.28■□□□□ 0.68
CPSF4-201ENST00000292476 KIAA1524Q8TCG1 905 aa19.28■□□□□ 0.68
CPSF4-201ENST00000292476 MAP7D2Q96T17 732 aa19.28■□□□□ 0.68
CPSF4-201ENST00000292476 MYOZ2Q9NPC6 264 aa19.28■□□□□ 0.68
CPSF4-201ENST00000292476 PCDHAC2Q9Y5I4 1007 aa19.28■□□□□ 0.68
CPSF4-201ENST00000292476 UQCRHLA0A096LP55 91 aa19.27■□□□□ 0.68
CPSF4-201ENST00000292476 UQCRHP07919 91 aa19.27■□□□□ 0.68
CPSF4-201ENST00000292476 SHMT1P34896 483 aa19.27■□□□□ 0.68
CPSF4-201ENST00000292476 ZNF75DP51815 510 aa19.27■□□□□ 0.68
CPSF4-201ENST00000292476 ZNF280AP59817 542 aaPredicted RBP19.27■□□□□ 0.68
CPSF4-201ENST00000292476 SNW1Q13573 536 aaKnown RBP19.27■□□□□ 0.68
CPSF4-201ENST00000292476 HSP90AA2PQ14568 343 aaPredicted RBP19.27■□□□□ 0.68
CPSF4-201ENST00000292476 GRM4Q14833 912 aa19.27■□□□□ 0.68
CPSF4-201ENST00000292476 ADALQ6DHV7 355 aa19.27■□□□□ 0.68
CPSF4-201ENST00000292476 MTMR4Q9NYA4 1195 aa19.27■□□□□ 0.68
CPSF4-201ENST00000292476 DDTLA6NHG4 134 aaPredicted RBP19.27■□□□□ 0.67
CPSF4-201ENST00000292476 TTLL1O95922 423 aa19.27■□□□□ 0.67
CPSF4-201ENST00000292476 HTRA3P83110 453 aa19.27■□□□□ 0.67
CPSF4-201ENST00000292476 GNL2Q13823 731 aaKnown RBP19.27■□□□□ 0.67
CPSF4-201ENST00000292476 CERKLQ49MI3 558 aaPredicted RBP19.27■□□□□ 0.67
CPSF4-201ENST00000292476 TATDN1Q6P1N9 297 aa19.27■□□□□ 0.67
CPSF4-201ENST00000292476 MRPS27Q92552 414 aaKnown RBP19.27■□□□□ 0.67
CPSF4-201ENST00000292476 CEP95Q96GE4 821 aa19.27■□□□□ 0.67
CPSF4-201ENST00000292476 IGKV6D-41A0A0C4DH26 115 aa19.26■□□□□ 0.67
CPSF4-201ENST00000292476 PPFIA3O75145 1194 aa19.26■□□□□ 0.67
CPSF4-201ENST00000292476 ITGBL1O95965 494 aaPredicted RBP19.26■□□□□ 0.67
CPSF4-201ENST00000292476 SMARCA1P28370 1054 aa19.26■□□□□ 0.67
CPSF4-201ENST00000292476 TNFAIP1Q13829 316 aa19.26■□□□□ 0.67
CPSF4-201ENST00000292476 KRT40Q6A162 431 aa19.26■□□□□ 0.67
CPSF4-201ENST00000292476 MTERF4Q7Z6M4 381 aaKnown RBP19.26■□□□□ 0.67
CPSF4-201ENST00000292476 ZFPM1Q8IX07 1006 aa19.26■□□□□ 0.67
CPSF4-201ENST00000292476 FAM177A1Q8N128 213 aaPredicted RBP19.26■□□□□ 0.67
CPSF4-201ENST00000292476 ZBED3Q96IU2 234 aaPredicted RBP19.26■□□□□ 0.67
CPSF4-201ENST00000292476 CSRNP1Q96S65 589 aa19.26■□□□□ 0.67
CPSF4-201ENST00000292476 GOLPH3LQ9H4A5 285 aa19.26■□□□□ 0.67
CPSF4-201ENST00000292476 ANO10Q9NW15 660 aa19.26■□□□□ 0.67
CPSF4-201ENST00000292476 AKR1B1P15121 316 aa19.25■□□□□ 0.67
CPSF4-201ENST00000292476 ME1P48163 572 aa19.25■□□□□ 0.67
CPSF4-201ENST00000292476 GUCY1B3Q02153 619 aa19.25■□□□□ 0.67
CPSF4-201ENST00000292476 IQCB1Q15051 598 aa19.25■□□□□ 0.67
CPSF4-201ENST00000292476 LINC00301Q8NCQ3 95 aa19.25■□□□□ 0.67
CPSF4-201ENST00000292476 MYRIPQ8NFW9 859 aa19.25■□□□□ 0.67
CPSF4-201ENST00000292476 ZNF830Q96NB3 372 aaPredicted RBP19.25■□□□□ 0.67
CPSF4-201ENST00000292476 DNAJC25Q9H1X3 360 aa19.25■□□□□ 0.67
CPSF4-201ENST00000292476 KCNF1Q9H3M0 494 aa19.25■□□□□ 0.67
CPSF4-201ENST00000292476 TCP10L2B9ZVM9 353 aa19.24■□□□□ 0.67
CPSF4-201ENST00000292476 MPHOSPH10O00566 681 aaKnown RBP19.24■□□□□ 0.67
CPSF4-201ENST00000292476 FOSBP53539 338 aa19.24■□□□□ 0.67
CPSF4-201ENST00000292476 FMR1Q06787 632 aaKnown RBP eCLIP19.24■□□□□ 0.67
CPSF4-201ENST00000292476 FUT2Q10981 343 aa19.24■□□□□ 0.67
CPSF4-201ENST00000292476 SH3BP5LQ7L8J4 393 aa19.24■□□□□ 0.67
CPSF4-201ENST00000292476 CCDC82Q8N4S0 544 aa19.24■□□□□ 0.67
CPSF4-201ENST00000292476 FSIP1Q8NA03 581 aa19.24■□□□□ 0.67
CPSF4-201ENST00000292476 KANSL2Q9H9L4 492 aa19.24■□□□□ 0.67
CPSF4-201ENST00000292476 ASTN2O75129 1339 aaPredicted RBP19.24■□□□□ 0.67
CPSF4-201ENST00000292476 POLR2AP24928 1970 aaKnown RBP19.24■□□□□ 0.67
CPSF4-201ENST00000292476 GOLGA6L19H0YKK7 550 aa19.24■□□□□ 0.67
CPSF4-201ENST00000292476 WNT10BO00744 389 aa19.24■□□□□ 0.67
CPSF4-201ENST00000292476 PARP1P09874 1014 aaKnown RBP19.24■□□□□ 0.67
CPSF4-201ENST00000292476 GTF2F1P35269 517 aaKnown RBP eCLIP19.24■□□□□ 0.67
CPSF4-201ENST00000292476 APLP1P51693 650 aa19.24■□□□□ 0.67
CPSF4-201ENST00000292476 TMEM179Q6ZVK1 233 aa19.24■□□□□ 0.67
CPSF4-201ENST00000292476 FMR1NBQ8N0W7 255 aaPredicted RBP19.24■□□□□ 0.67
CPSF4-201ENST00000292476 MRFAP1L1Q96HT8 127 aa19.24■□□□□ 0.67
CPSF4-201ENST00000292476 GLIS2Q9BZE0 524 aaPredicted RBP19.24■□□□□ 0.67
CPSF4-201ENST00000292476 TRIM5Q9C035 493 aa19.24■□□□□ 0.67
CPSF4-201ENST00000292476 PDCL3Q9H2J4 239 aa19.24■□□□□ 0.67
CPSF4-201ENST00000292476 VEZTQ9HBM0 779 aa19.24■□□□□ 0.67
CPSF4-201ENST00000292476 CABP5Q9NP86 173 aa19.24■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms