RNA–Protein interactions for RNA: ENST00000291842.9

SHKBP1-201, Transcript of SH3KBP1 binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHKBP1, Length 2,363 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-201ENST00000291842 RASA1P20936 1047 aa20.85■□□□□ 0.93
SHKBP1-201ENST00000291842 KCNJ6P48051 423 aa20.85■□□□□ 0.93
SHKBP1-201ENST00000291842 TBX2Q13207 712 aaPredicted RBP20.85■□□□□ 0.93
SHKBP1-201ENST00000291842 GRM4Q14833 912 aa20.85■□□□□ 0.93
SHKBP1-201ENST00000291842 TMEM139Q8IV31 216 aa20.85■□□□□ 0.93
SHKBP1-201ENST00000291842 MTRQ99707 1265 aa20.85■□□□□ 0.93
SHKBP1-201ENST00000291842 TMEM47Q9BQJ4 181 aa20.85■□□□□ 0.93
SHKBP1-201ENST00000291842 THSD7AQ9UPZ6 1657 aa20.84■□□□□ 0.93
SHKBP1-201ENST00000291842 TEX33O43247 280 aa20.84■□□□□ 0.93
SHKBP1-201ENST00000291842 CALML3P27482 149 aa20.84■□□□□ 0.93
SHKBP1-201ENST00000291842 PPP4CP60510 307 aa20.84■□□□□ 0.93
SHKBP1-201ENST00000291842 CUL4BQ13620 913 aa20.84■□□□□ 0.93
SHKBP1-201ENST00000291842 E2F4Q16254 413 aa20.84■□□□□ 0.93
SHKBP1-201ENST00000291842 MEX3CQ5U5Q3 659 aaKnown RBP20.84■□□□□ 0.93
SHKBP1-201ENST00000291842 WWC2Q6AWC2 1192 aa20.84■□□□□ 0.93
SHKBP1-201ENST00000291842 IQUBQ8NA54 791 aa20.84■□□□□ 0.93
SHKBP1-201ENST00000291842 PCDHA4Q9UN74 947 aa20.84■□□□□ 0.93
SHKBP1-201ENST00000291842 SYNRGQ9UMZ2 1314 aa20.84■□□□□ 0.93
SHKBP1-201ENST00000291842 PPP1R3GB7ZBB8 358 aa20.83■□□□□ 0.93
SHKBP1-201ENST00000291842 SERPINB2P05120 415 aa20.83■□□□□ 0.93
SHKBP1-201ENST00000291842 GYS1P13807 737 aa20.83■□□□□ 0.93
SHKBP1-201ENST00000291842 TRAPPC10P48553 1259 aa20.83■□□□□ 0.93
SHKBP1-201ENST00000291842 TMED8Q6PL24 325 aaPredicted RBP20.83■□□□□ 0.93
SHKBP1-201ENST00000291842 GSDMAQ96QA5 445 aa20.83■□□□□ 0.93
SHKBP1-201ENST00000291842 LY75O60449 1722 aa20.83■□□□□ 0.93
SHKBP1-201ENST00000291842 KIF2AO00139 706 aaPredicted RBP20.83■□□□□ 0.93
SHKBP1-201ENST00000291842 LDHCP07864 332 aa20.83■□□□□ 0.93
SHKBP1-201ENST00000291842 NR1I3Q14994 352 aa20.83■□□□□ 0.93
SHKBP1-201ENST00000291842 TEX11Q8IYF3 940 aa20.83■□□□□ 0.93
SHKBP1-201ENST00000291842 TC2NQ8N9U0 490 aa20.83■□□□□ 0.93
SHKBP1-201ENST00000291842 GGA1Q9UJY5 639 aa20.83■□□□□ 0.93
SHKBP1-201ENST00000291842 INF2Q27J81 1249 aa20.82■□□□□ 0.92
SHKBP1-201ENST00000291842 SPATA1Q5VX52 437 aa20.82■□□□□ 0.92
SHKBP1-201ENST00000291842 PDXDC2PQ6P474 469 aa20.82■□□□□ 0.92
SHKBP1-201ENST00000291842 FAM177A1Q8N128 213 aaPredicted RBP20.82■□□□□ 0.92
SHKBP1-201ENST00000291842 C4orf32Q8N8J7 132 aa20.82■□□□□ 0.92
SHKBP1-201ENST00000291842 ANKS1AQ92625 1134 aa20.82■□□□□ 0.92
SHKBP1-201ENST00000291842 BAG1Q99933 345 aaPredicted RBP20.82■□□□□ 0.92
SHKBP1-201ENST00000291842 CTNND2Q9UQB3 1225 aa20.82■□□□□ 0.92
SHKBP1-201ENST00000291842 ROBO3Q96MS0 1386 aa20.82■□□□□ 0.92
SHKBP1-201ENST00000291842 CCDC194A0A1B0GVG4 234 aa20.82■□□□□ 0.92
SHKBP1-201ENST00000291842 SPDYE4A6NLX3 237 aa20.82■□□□□ 0.92
SHKBP1-201ENST00000291842 KARSQ15046 597 aaKnown RBP20.82■□□□□ 0.92
SHKBP1-201ENST00000291842 SEPT12Q8IYM1 358 aa20.82■□□□□ 0.92
SHKBP1-201ENST00000291842 DNAI1Q9UI46 699 aa20.82■□□□□ 0.92
SHKBP1-201ENST00000291842 PP2D1A8MPX8 630 aa20.81■□□□□ 0.92
SHKBP1-201ENST00000291842 CDK8P49336 464 aa20.81■□□□□ 0.92
SHKBP1-201ENST00000291842 MFSD14BQ5SR56 506 aa20.81■□□□□ 0.92
SHKBP1-201ENST00000291842 REXO1L1PQ8IX06 675 aa20.81■□□□□ 0.92
SHKBP1-201ENST00000291842 POLLQ9UGP5 575 aa20.81■□□□□ 0.92
SHKBP1-201ENST00000291842 PCDHA6Q9UN73 950 aa20.81■□□□□ 0.92
SHKBP1-201ENST00000291842 PCDHA8Q9Y5H6 950 aa20.81■□□□□ 0.92
SHKBP1-201ENST00000291842 ST5P78524 1137 aa20.81■□□□□ 0.92
SHKBP1-201ENST00000291842 CBX1P83916 185 aa20.81■□□□□ 0.92
SHKBP1-201ENST00000291842 SYCP1Q15431 976 aa20.81■□□□□ 0.92
SHKBP1-201ENST00000291842 APTXQ7Z2E3 356 aaKnown RBP20.81■□□□□ 0.92
SHKBP1-201ENST00000291842 LRRN4CLQ8ND94 238 aa20.81■□□□□ 0.92
SHKBP1-201ENST00000291842 EYA3Q99504 573 aa20.81■□□□□ 0.92
SHKBP1-201ENST00000291842 PLIN2Q99541 437 aa20.81■□□□□ 0.92
SHKBP1-201ENST00000291842 TMEM60Q9H2L4 133 aa20.81■□□□□ 0.92
SHKBP1-201ENST00000291842 SH3GLB2Q9NR46 395 aa20.81■□□□□ 0.92
SHKBP1-201ENST00000291842 MAPK8IP1Q9UQF2 711 aa20.81■□□□□ 0.92
SHKBP1-201ENST00000291842 A0A1B0GTH6 734 aa20.8■□□□□ 0.92
SHKBP1-201ENST00000291842 RRAGBQ5VZM2 374 aa20.8■□□□□ 0.92
SHKBP1-201ENST00000291842 CPLX3Q8WVH0 158 aa20.8■□□□□ 0.92
SHKBP1-201ENST00000291842 KLRF2D3W0D1 207 aa20.8■□□□□ 0.92
SHKBP1-201ENST00000291842 C6orf229H3BNL8 230 aa20.8■□□□□ 0.92
SHKBP1-201ENST00000291842 M0R2N6 131 aa20.8■□□□□ 0.92
SHKBP1-201ENST00000291842 SLU7O95391 586 aaKnown RBP20.8■□□□□ 0.92
SHKBP1-201ENST00000291842 GNAQP50148 359 aa20.8■□□□□ 0.92
SHKBP1-201ENST00000291842 CRY2Q49AN0 593 aa20.8■□□□□ 0.92
SHKBP1-201ENST00000291842 USP17L2Q6R6M4 530 aa20.8■□□□□ 0.92
SHKBP1-201ENST00000291842 TOGARAM2Q6ZUX3 1019 aa20.8■□□□□ 0.92
SHKBP1-201ENST00000291842 CREBRFQ8IUR6 639 aa20.8■□□□□ 0.92
SHKBP1-201ENST00000291842 RBM17Q96I25 401 aaKnown RBP20.8■□□□□ 0.92
SHKBP1-201ENST00000291842 TCP11L1Q9NUJ3 509 aa20.8■□□□□ 0.92
SHKBP1-201ENST00000291842 NAV1Q8NEY1 1877 aa20.79■□□□□ 0.92
SHKBP1-201ENST00000291842 FLT1P17948 1338 aa20.79■□□□□ 0.92
SHKBP1-201ENST00000291842 GPR75-ASB3A0A0A6YYF3 556 aa20.79■□□□□ 0.92
SHKBP1-201ENST00000291842 PALM3A6NDB9 673 aaPredicted RBP20.79■□□□□ 0.92
SHKBP1-201ENST00000291842 STXBP3O00186 592 aa20.79■□□□□ 0.92
SHKBP1-201ENST00000291842 ARHGAP6O43182 974 aa20.79■□□□□ 0.92
SHKBP1-201ENST00000291842 ATP2B4P23634 1241 aa20.79■□□□□ 0.92
SHKBP1-201ENST00000291842 ETF1P62495 437 aaKnown RBP20.79■□□□□ 0.92
SHKBP1-201ENST00000291842 ELF2Q15723 593 aa20.79■□□□□ 0.92
SHKBP1-201ENST00000291842 TRIM65Q6PJ69 517 aa20.79■□□□□ 0.92
SHKBP1-201ENST00000291842 VAT1LQ9HCJ6 419 aa20.79■□□□□ 0.92
SHKBP1-201ENST00000291842 PPP2R2CQ9Y2T4 447 aa20.79■□□□□ 0.92
SHKBP1-201ENST00000291842 FANCGO15287 622 aa20.79■□□□□ 0.92
SHKBP1-201ENST00000291842 IL1R1P14778 569 aa20.79■□□□□ 0.92
SHKBP1-201ENST00000291842 C15orf52Q6ZUT6 534 aaKnown RBP20.79■□□□□ 0.92
SHKBP1-201ENST00000291842 BARHL2Q9NY43 387 aa20.79■□□□□ 0.92
SHKBP1-201ENST00000291842 AFF2P51816 1311 aa20.78■□□□□ 0.92
SHKBP1-201ENST00000291842 ZBTB22O15209 634 aa20.78■□□□□ 0.92
SHKBP1-201ENST00000291842 CCT6AP40227 531 aaKnown RBP20.78■□□□□ 0.92
SHKBP1-201ENST00000291842 CDKAL1Q5VV42 579 aa20.78■□□□□ 0.92
SHKBP1-201ENST00000291842 ARL6IP4Q66PJ3 421 aaKnown RBP20.78■□□□□ 0.92
SHKBP1-201ENST00000291842 RASSF8Q8NHQ8 419 aa20.78■□□□□ 0.92
SHKBP1-201ENST00000291842 TBC1D16Q8TBP0 767 aa20.78■□□□□ 0.92
SHKBP1-201ENST00000291842 CERKQ8TCT0 537 aa20.78■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms