RNA–Protein interactions for RNA: ENST00000274071.6

PDGFC-201, Transcript of platelet derived growth factor C, humanhuman

TSL 1 (best)

Gene PDGFC, Length 2,987 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFC-201ENST00000274071 PSMA5P28066 241 aa10.28□□□□□ -0.76
PDGFC-201ENST00000274071 DEUP1Q05D60 604 aa10.28□□□□□ -0.76
PDGFC-201ENST00000274071 PABPC1LQ4VXU2 614 aaKnown RBP10.28□□□□□ -0.76
PDGFC-201ENST00000274071 BLOC1S2Q6QNY1 142 aa10.28□□□□□ -0.76
PDGFC-201ENST00000274071 SEC16BQ96JE7 1060 aa10.28□□□□□ -0.76
PDGFC-201ENST00000274071 ZIM3Q96PE6 472 aa10.28□□□□□ -0.76
PDGFC-201ENST00000274071 OCEL1Q9H607 264 aa10.28□□□□□ -0.76
PDGFC-201ENST00000274071 AATFQ9NY61 560 aaKnown RBP eCLIP10.28□□□□□ -0.76
PDGFC-201ENST00000274071 TTF2Q9UNY4 1162 aaKnown RBP10.28□□□□□ -0.76
PDGFC-201ENST00000274071 LRRD1A4D1F6 860 aa10.27□□□□□ -0.76
PDGFC-201ENST00000274071 SRRM3A6NNA2 597 aaPredicted RBP10.27□□□□□ -0.76
PDGFC-201ENST00000274071 HSF2BPO75031 334 aa10.27□□□□□ -0.76
PDGFC-201ENST00000274071 ZNF189O75820 626 aaPredicted RBP10.27□□□□□ -0.76
PDGFC-201ENST00000274071 EIF4BP23588 611 aaKnown RBP10.27□□□□□ -0.76
PDGFC-201ENST00000274071 TUBP50607 506 aa10.27□□□□□ -0.76
PDGFC-201ENST00000274071 BYSLQ13895 437 aaKnown RBP10.27□□□□□ -0.76
PDGFC-201ENST00000274071 SULT6B1Q6IMI4 303 aa10.27□□□□□ -0.76
PDGFC-201ENST00000274071 SLC4A10Q6U841 1118 aa10.27□□□□□ -0.76
PDGFC-201ENST00000274071 USP31Q70CQ4 1352 aa10.27□□□□□ -0.76
PDGFC-201ENST00000274071 MIPOL1Q8TD10 442 aa10.27□□□□□ -0.76
PDGFC-201ENST00000274071 DTNBP1Q96EV8 351 aa10.27□□□□□ -0.76
PDGFC-201ENST00000274071 C8orf76Q96K31 380 aa10.27□□□□□ -0.76
PDGFC-201ENST00000274071 NAA15Q9BXJ9 866 aaKnown RBP10.27□□□□□ -0.76
PDGFC-201ENST00000274071 NDST4Q9H3R1 872 aa10.27□□□□□ -0.76
PDGFC-201ENST00000274071 GALNT8Q9NY28 637 aa10.27□□□□□ -0.76
PDGFC-201ENST00000274071 RBM8AQ9Y5S9 174 aaKnown RBP10.27□□□□□ -0.76
PDGFC-201ENST00000274071 NPTXRO95502 500 aa10.27□□□□□ -0.77
PDGFC-201ENST00000274071 RPS6KB1P23443 525 aa10.27□□□□□ -0.77
PDGFC-201ENST00000274071 ALDH3A1P30838 453 aa10.27□□□□□ -0.77
PDGFC-201ENST00000274071 MAP3K12Q12852 859 aa10.27□□□□□ -0.77
PDGFC-201ENST00000274071 ZMYM1Q5SVZ6 1142 aa10.27□□□□□ -0.77
PDGFC-201ENST00000274071 DPY19L2Q6NUT2 758 aa10.27□□□□□ -0.77
PDGFC-201ENST00000274071 MAATS1Q7Z4T9 603 aa10.27□□□□□ -0.77
PDGFC-201ENST00000274071 ILDR1Q86SU0 546 aaPredicted RBP10.27□□□□□ -0.77
PDGFC-201ENST00000274071 ELOA2Q8IYF1 753 aaPredicted RBP10.27□□□□□ -0.77
PDGFC-201ENST00000274071 CPLX3Q8WVH0 158 aa10.27□□□□□ -0.77
PDGFC-201ENST00000274071 RBM33Q96EV2 1170 aaKnown RBP10.27□□□□□ -0.77
PDGFC-201ENST00000274071 CAPZA3Q96KX2 299 aa10.27□□□□□ -0.77
PDGFC-201ENST00000274071 C19orf44Q9H6X5 657 aa10.27□□□□□ -0.77
PDGFC-201ENST00000274071 PREBQ9HCU5 417 aa10.27□□□□□ -0.77
PDGFC-201ENST00000274071 GMNCA6NCL1 334 aa10.26□□□□□ -0.77
PDGFC-201ENST00000274071 SASH1O94885 1247 aa10.26□□□□□ -0.77
PDGFC-201ENST00000274071 ATP8B2P98198 1209 aa10.26□□□□□ -0.77
PDGFC-201ENST00000274071 ANKRD20A2Q5SQ80 823 aa10.26□□□□□ -0.77
PDGFC-201ENST00000274071 ANKRD20A1Q5TYW2 823 aa10.26□□□□□ -0.77
PDGFC-201ENST00000274071 ANKRD20A3Q5VUR7 823 aa10.26□□□□□ -0.77
PDGFC-201ENST00000274071 GALNT17Q6IS24 598 aa10.26□□□□□ -0.77
PDGFC-201ENST00000274071 UBE3BQ7Z3V4 1068 aa10.26□□□□□ -0.77
PDGFC-201ENST00000274071 HDAC7Q8WUI4 952 aa10.26□□□□□ -0.77
PDGFC-201ENST00000274071 ALDH8A1Q9H2A2 487 aaPredicted RBP10.26□□□□□ -0.77
PDGFC-201ENST00000274071 ZWILCHQ9H900 591 aa10.26□□□□□ -0.77
PDGFC-201ENST00000274071 TUBE1Q9UJT0 475 aa10.26□□□□□ -0.77
PDGFC-201ENST00000274071 SAR1BQ9Y6B6 198 aa10.26□□□□□ -0.77
PDGFC-201ENST00000274071 TAF6LQ9Y6J9 622 aa10.26□□□□□ -0.77
PDGFC-201ENST00000274071 GHRP10912 638 aa10.26□□□□□ -0.77
PDGFC-201ENST00000274071 NAT1P18440 290 aa10.26□□□□□ -0.77
PDGFC-201ENST00000274071 RBL2Q08999 1139 aa10.26□□□□□ -0.77
PDGFC-201ENST00000274071 ZNF268Q14587 947 aaPredicted RBP10.26□□□□□ -0.77
PDGFC-201ENST00000274071 MAEAQ7L5Y9 396 aa10.26□□□□□ -0.77
PDGFC-201ENST00000274071 TEX9Q8N6V9 391 aa10.26□□□□□ -0.77
PDGFC-201ENST00000274071 C17orf50Q8WW18 174 aa10.26□□□□□ -0.77
PDGFC-201ENST00000274071 RPGRIP1Q96KN7 1286 aa10.26□□□□□ -0.77
PDGFC-201ENST00000274071 ADAMTSL3P82987 1691 aa10.26□□□□□ -0.77
PDGFC-201ENST00000274071 ZNF233A6NK53 670 aa10.26□□□□□ -0.77
PDGFC-201ENST00000274071 F6X3S4 739 aa10.26□□□□□ -0.77
PDGFC-201ENST00000274071 POLE2P56282 527 aa10.26□□□□□ -0.77
PDGFC-201ENST00000274071 NLRP6P59044 892 aa10.26□□□□□ -0.77
PDGFC-201ENST00000274071 ENOX2Q16206 610 aaKnown RBP10.26□□□□□ -0.77
PDGFC-201ENST00000274071 Q4G0T1 1027 aa10.26□□□□□ -0.77
PDGFC-201ENST00000274071 NAA16Q6N069 864 aaPredicted RBP10.26□□□□□ -0.77
PDGFC-201ENST00000274071 CNBD1Q8NA66 436 aa10.26□□□□□ -0.77
PDGFC-201ENST00000274071 RUFY2Q8WXA3 655 aa10.26□□□□□ -0.77
PDGFC-201ENST00000274071 SYT15Q9BQS2 421 aa10.26□□□□□ -0.77
PDGFC-201ENST00000274071 ANKARQ7Z5J8 1434 aa10.25□□□□□ -0.77
PDGFC-201ENST00000274071 MAP3K19Q56UN5 1328 aa10.25□□□□□ -0.77
PDGFC-201ENST00000274071 SH3TC1Q8TE82 1336 aa10.25□□□□□ -0.77
PDGFC-201ENST00000274071 FAM83GA6ND36 823 aa10.25□□□□□ -0.77
PDGFC-201ENST00000274071 SLC27A2O14975 620 aa10.25□□□□□ -0.77
PDGFC-201ENST00000274071 PARP1P09874 1014 aaKnown RBP10.25□□□□□ -0.77
PDGFC-201ENST00000274071 ALADP13716 330 aa10.25□□□□□ -0.77
PDGFC-201ENST00000274071 KIF5BP33176 963 aa10.25□□□□□ -0.77
PDGFC-201ENST00000274071 ADAM9Q13443 819 aa10.25□□□□□ -0.77
PDGFC-201ENST00000274071 NR1I3Q14994 352 aa10.25□□□□□ -0.77
PDGFC-201ENST00000274071 CCDC38Q502W7 563 aa10.25□□□□□ -0.77
PDGFC-201ENST00000274071 PPP4R3AQ6IN85 833 aa10.25□□□□□ -0.77
PDGFC-201ENST00000274071 ANO7Q6IWH7 933 aa10.25□□□□□ -0.77
PDGFC-201ENST00000274071 CCDC63Q8NA47 563 aa10.25□□□□□ -0.77
PDGFC-201ENST00000274071 P3H4Q92791 437 aa10.25□□□□□ -0.77
PDGFC-201ENST00000274071 NAF1Q96HR8 494 aaKnown RBP10.25□□□□□ -0.77
PDGFC-201ENST00000274071 KCNMB3Q9NPA1 279 aa10.25□□□□□ -0.77
PDGFC-201ENST00000274071 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP10.25□□□□□ -0.77
PDGFC-201ENST00000274071 DMGDHQ9UI17 866 aaKnown RBP10.25□□□□□ -0.77
PDGFC-201ENST00000274071 NALCNQ8IZF0 1738 aa10.25□□□□□ -0.77
PDGFC-201ENST00000274071 DLG5Q8TDM6 1919 aa10.25□□□□□ -0.77
PDGFC-201ENST00000274071 CHD2O14647 1828 aaKnown RBP10.25□□□□□ -0.77
PDGFC-201ENST00000274071 PDE2AO00408 941 aaPredicted RBP10.25□□□□□ -0.77
PDGFC-201ENST00000274071 EVI5O60447 810 aa10.25□□□□□ -0.77
PDGFC-201ENST00000274071 ATP1A1P05023 1023 aaKnown RBP10.25□□□□□ -0.77
PDGFC-201ENST00000274071 CYP11B2P19099 503 aa10.25□□□□□ -0.77
PDGFC-201ENST00000274071 RPL13P26373 211 aaKnown RBP10.25□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms