RNA–Protein interactions for RNA: ENST00000269138.9

SS18-202, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-202ENST00000269138 MYH4Q9Y623 1939 aa14.98□□□□□ -0.01
SS18-202ENST00000269138 SPDYE16A6NNV3 312 aaPredicted RBP14.97□□□□□ -0.01
SS18-202ENST00000269138 FLOT1O75955 427 aa14.97□□□□□ -0.01
SS18-202ENST00000269138 BCRP11274 1271 aa14.97□□□□□ -0.01
SS18-202ENST00000269138 BMP3P12645 472 aa14.97□□□□□ -0.01
SS18-202ENST00000269138 SLC1A4P43007 532 aa14.97□□□□□ -0.01
SS18-202ENST00000269138 EXOSC10Q01780 885 aaKnown RBP14.97□□□□□ -0.01
SS18-202ENST00000269138 COG2Q14746 738 aa14.97□□□□□ -0.01
SS18-202ENST00000269138 IFIT1BQ5T764 474 aaKnown RBP14.97□□□□□ -0.01
SS18-202ENST00000269138 KCTD1Q719H9 257 aa14.97□□□□□ -0.01
SS18-202ENST00000269138 ANKRD13CQ8N6S4 541 aa14.97□□□□□ -0.01
SS18-202ENST00000269138 PNMA1Q8ND90 353 aa14.97□□□□□ -0.01
SS18-202ENST00000269138 ZNF296Q8WUU4 475 aaPredicted RBP14.97□□□□□ -0.01
SS18-202ENST00000269138 GMCL1Q96IK5 515 aa14.97□□□□□ -0.01
SS18-202ENST00000269138 TXNRD2Q9NNW7 524 aa14.97□□□□□ -0.01
SS18-202ENST00000269138 ISY1Q9ULR0 285 aaKnown RBP14.97□□□□□ -0.01
SS18-202ENST00000269138 SH2B2O14492 632 aaPredicted RBP14.97□□□□□ -0.01
SS18-202ENST00000269138 ECM2O94769 699 aaPredicted RBP14.97□□□□□ -0.01
SS18-202ENST00000269138 DSG3P32926 999 aa14.97□□□□□ -0.01
SS18-202ENST00000269138 CAP1Q01518 475 aa14.97□□□□□ -0.01
SS18-202ENST00000269138 WTAPQ15007 396 aa14.97□□□□□ -0.01
SS18-202ENST00000269138 TTBK2Q6IQ55 1244 aa14.97□□□□□ -0.01
SS18-202ENST00000269138 DHX32Q7L7V1 743 aaKnown RBP14.97□□□□□ -0.01
SS18-202ENST00000269138 ATG4CQ96DT6 458 aa14.97□□□□□ -0.01
SS18-202ENST00000269138 LY9Q9HBG7 655 aa14.97□□□□□ -0.01
SS18-202ENST00000269138 RBPJLQ9UBG7 517 aa14.97□□□□□ -0.01
SS18-202ENST00000269138 FRMPD2Q68DX3 1309 aaPredicted RBP14.96□□□□□ -0.01
SS18-202ENST00000269138 ERICH2A1L162 156 aa14.96□□□□□ -0.02
SS18-202ENST00000269138 TMEM232C9JQI7 657 aa14.96□□□□□ -0.02
SS18-202ENST00000269138 FKTNO75072 461 aa14.96□□□□□ -0.02
SS18-202ENST00000269138 CNMDO75829 334 aa14.96□□□□□ -0.02
SS18-202ENST00000269138 PDHBP11177 359 aa14.96□□□□□ -0.02
SS18-202ENST00000269138 SP3Q02447 781 aa14.96□□□□□ -0.02
SS18-202ENST00000269138 SART3Q15020 963 aaKnown RBP14.96□□□□□ -0.02
SS18-202ENST00000269138 CCDC96Q2M329 555 aa14.96□□□□□ -0.02
SS18-202ENST00000269138 DCAF4Q8WV16 495 aa14.96□□□□□ -0.02
SS18-202ENST00000269138 PAGR1Q9BTK6 254 aa14.96□□□□□ -0.02
SS18-202ENST00000269138 GPCPD1Q9NPB8 672 aa14.96□□□□□ -0.02
SS18-202ENST00000269138 HOXC10Q9NYD6 342 aa14.96□□□□□ -0.02
SS18-202ENST00000269138 EIF5BO60841 1220 aaKnown RBP14.95□□□□□ -0.02
SS18-202ENST00000269138 GOLGA8HP0CJ92 632 aa14.95□□□□□ -0.02
SS18-202ENST00000269138 SNHG28P0DPA3 235 aa14.95□□□□□ -0.02
SS18-202ENST00000269138 CASTP20810 708 aaKnown RBP14.95□□□□□ -0.02
SS18-202ENST00000269138 GCLCP48506 637 aaPredicted RBP14.95□□□□□ -0.02
SS18-202ENST00000269138 Q3C1V9 767 aa14.95□□□□□ -0.02
SS18-202ENST00000269138 NOM1Q5C9Z4 860 aaKnown RBP14.95□□□□□ -0.02
SS18-202ENST00000269138 TMEM87BQ96K49 555 aa14.95□□□□□ -0.02
SS18-202ENST00000269138 SLF1Q9BQI6 1058 aa14.95□□□□□ -0.02
SS18-202ENST00000269138 BTBD7Q9P203 1132 aa14.95□□□□□ -0.02
SS18-202ENST00000269138 PPP1R9AQ9ULJ8 1098 aa14.95□□□□□ -0.02
SS18-202ENST00000269138 HMGB1P09429 215 aaKnown RBP14.94□□□□□ -0.02
SS18-202ENST00000269138 RPS6KB1P23443 525 aa14.94□□□□□ -0.02
SS18-202ENST00000269138 CTGFP29279 349 aa14.94□□□□□ -0.02
SS18-202ENST00000269138 SLC16A2P36021 539 aa14.94□□□□□ -0.02
SS18-202ENST00000269138 ZNF543Q08ER8 600 aa14.94□□□□□ -0.02
SS18-202ENST00000269138 BLOC1S2Q6QNY1 142 aa14.94□□□□□ -0.02
SS18-202ENST00000269138 LBX2Q6XYB7 198 aa14.94□□□□□ -0.02
SS18-202ENST00000269138 CD99L2Q8TCZ2 262 aa14.94□□□□□ -0.02
SS18-202ENST00000269138 KIFC2Q96AC6 838 aa14.94□□□□□ -0.02
SS18-202ENST00000269138 MTA3Q9BTC8 594 aa14.94□□□□□ -0.02
SS18-202ENST00000269138 ARHGAP39Q9C0H5 1083 aa14.94□□□□□ -0.02
SS18-202ENST00000269138 FEM1BQ9UK73 627 aa14.94□□□□□ -0.02
SS18-202ENST00000269138 ADAMTS5Q9UNA0 930 aa14.94□□□□□ -0.02
SS18-202ENST00000269138 PSMA5P28066 241 aa14.93□□□□□ -0.02
SS18-202ENST00000269138 SNAP25P60880 206 aa14.93□□□□□ -0.02
SS18-202ENST00000269138 FAM110CQ1W6H9 321 aa14.93□□□□□ -0.02
SS18-202ENST00000269138 NFXL1Q6ZNB6 911 aa14.93□□□□□ -0.02
SS18-202ENST00000269138 PRPF38AQ8NAV1 312 aaKnown RBP14.93□□□□□ -0.02
SS18-202ENST00000269138 MYL10Q9BUA6 226 aa14.93□□□□□ -0.02
SS18-202ENST00000269138 UPF3BQ9BZI7 483 aaKnown RBP14.93□□□□□ -0.02
SS18-202ENST00000269138 CPVLQ9H3G5 476 aa14.93□□□□□ -0.02
SS18-202ENST00000269138 ZSWIM6Q9HCJ5 1215 aa14.93□□□□□ -0.02
SS18-202ENST00000269138 MORF4L1Q9UBU8 362 aa14.93□□□□□ -0.02
SS18-202ENST00000269138 RABGAP1Q9Y3P9 1069 aa14.93□□□□□ -0.02
SS18-202ENST00000269138 WDR19Q8NEZ3 1342 aa14.93□□□□□ -0.02
SS18-202ENST00000269138 RLFQ13129 1914 aa14.93□□□□□ -0.02
SS18-202ENST00000269138 VWA5AO00534 786 aa14.92□□□□□ -0.02
SS18-202ENST00000269138 LIFRP42702 1097 aa14.92□□□□□ -0.02
SS18-202ENST00000269138 STAT2P52630 851 aa14.92□□□□□ -0.02
SS18-202ENST00000269138 ERVK-9P63128 1117 aa14.92□□□□□ -0.02
SS18-202ENST00000269138 ERVK-24P63145 666 aa14.92□□□□□ -0.02
SS18-202ENST00000269138 LACTBP83111 547 aaPredicted RBP14.92□□□□□ -0.02
SS18-202ENST00000269138 TROAPQ12815 778 aa14.92□□□□□ -0.02
SS18-202ENST00000269138 IKQ13123 557 aaPredicted RBP14.92□□□□□ -0.02
SS18-202ENST00000269138 Q6ZUG5 572 aa14.92□□□□□ -0.02
SS18-202ENST00000269138 MYPNQ86TC9 1320 aa14.92□□□□□ -0.02
SS18-202ENST00000269138 RAB11FIP4Q86YS3 637 aa14.92□□□□□ -0.02
SS18-202ENST00000269138 ZNF654Q8IZM8 581 aa14.92□□□□□ -0.02
SS18-202ENST00000269138 STAG2Q8N3U4 1231 aa14.92□□□□□ -0.02
SS18-202ENST00000269138 GPRC5AQ8NFJ5 357 aa14.92□□□□□ -0.02
SS18-202ENST00000269138 GTF3C2Q8WUA4 911 aaPredicted RBP14.92□□□□□ -0.02
SS18-202ENST00000269138 CHURC1Q8WUH1 139 aa14.92□□□□□ -0.02
SS18-202ENST00000269138 TM6SF1Q9BZW5 370 aa14.92□□□□□ -0.02
SS18-202ENST00000269138 UBA5Q9GZZ9 404 aa14.92□□□□□ -0.02
SS18-202ENST00000269138 PRDM10Q9NQV6 1147 aa14.92□□□□□ -0.02
SS18-202ENST00000269138 CCDC69A6NI79 296 aa14.92□□□□□ -0.02
SS18-202ENST00000269138 PLA2G6O60733 806 aa14.92□□□□□ -0.02
SS18-202ENST00000269138 ANAPC15P60006 121 aa14.92□□□□□ -0.02
SS18-202ENST00000269138 TMEM132BQ14DG7 1078 aa14.92□□□□□ -0.02
SS18-202ENST00000269138 BTNL9Q6UXG8 535 aa14.92□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms