RNA–Protein interactions for RNA: ENST00000265560.8

USP4-201, Transcript of ubiquitin specific peptidase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP4, Length 3,126 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-201ENST00000265560 NUP62CLQ9H1M0 184 aa18.99■□□□□ 0.63
USP4-201ENST00000265560 FER1L6Q2WGJ9 1857 aa18.99■□□□□ 0.63
USP4-201ENST00000265560 MYO3BQ8WXR4 1341 aa18.99■□□□□ 0.63
USP4-201ENST00000265560 KRT2P35908 639 aa18.98■□□□□ 0.63
USP4-201ENST00000265560 CCDC96Q2M329 555 aa18.98■□□□□ 0.63
USP4-201ENST00000265560 PIK3AP1Q6ZUJ8 805 aa18.98■□□□□ 0.63
USP4-201ENST00000265560 MYOZ2Q9NPC6 264 aa18.98■□□□□ 0.63
USP4-201ENST00000265560 GMPSP49915 693 aaPredicted RBP18.98■□□□□ 0.63
USP4-201ENST00000265560 MRE11P49959 708 aa18.98■□□□□ 0.63
USP4-201ENST00000265560 NDUFA8P51970 172 aa18.98■□□□□ 0.63
USP4-201ENST00000265560 TNMDQ9H2S6 317 aa18.98■□□□□ 0.63
USP4-201ENST00000265560 XPO5Q9HAV4 1204 aaKnown RBP eCLIP18.98■□□□□ 0.63
USP4-201ENST00000265560 IGKV6D-41A0A0C4DH26 115 aa18.98■□□□□ 0.63
USP4-201ENST00000265560 NASPP49321 788 aaPredicted RBP18.98■□□□□ 0.63
USP4-201ENST00000265560 SPICE1Q8N0Z3 855 aa18.98■□□□□ 0.63
USP4-201ENST00000265560 SNAP25P60880 206 aa18.97■□□□□ 0.63
USP4-201ENST00000265560 SLC39A14Q15043 492 aa18.97■□□□□ 0.63
USP4-201ENST00000265560 L1TD1Q5T7N2 865 aaKnown RBP18.97■□□□□ 0.63
USP4-201ENST00000265560 PRAMEF18Q5VWM3 479 aa18.97■□□□□ 0.63
USP4-201ENST00000265560 SIAH1Q8IUQ4 282 aa18.97■□□□□ 0.63
USP4-201ENST00000265560 FOXP1Q9H334 677 aaPredicted RBP18.97■□□□□ 0.63
USP4-201ENST00000265560 PTPAQ15257 358 aa18.97■□□□□ 0.63
USP4-201ENST00000265560 ZNF174Q15697 407 aa18.97■□□□□ 0.63
USP4-201ENST00000265560 ABCB5Q2M3G0 1257 aa18.97■□□□□ 0.63
USP4-201ENST00000265560 SAMD1Q6SPF0 538 aaPredicted RBP18.97■□□□□ 0.63
USP4-201ENST00000265560 MICALL2Q8IY33 904 aa18.97■□□□□ 0.63
USP4-201ENST00000265560 CNTNAP1P78357 1384 aa18.97■□□□□ 0.63
USP4-201ENST00000265560 SNW1Q13573 536 aaKnown RBP18.96■□□□□ 0.63
USP4-201ENST00000265560 SPDYE2Q495Y8 402 aa18.96■□□□□ 0.63
USP4-201ENST00000265560 AGBL3Q8NEM8 1001 aa18.96■□□□□ 0.63
USP4-201ENST00000265560 EHD4Q9H223 541 aa18.96■□□□□ 0.63
USP4-201ENST00000265560 TSPY26PQ9H489 355 aa18.96■□□□□ 0.63
USP4-201ENST00000265560 SPON1Q9HCB6 807 aa18.96■□□□□ 0.63
USP4-201ENST00000265560 FZD1Q9UP38 647 aa18.96■□□□□ 0.63
USP4-201ENST00000265560 ZNF541Q9H0D2 1346 aa18.96■□□□□ 0.63
USP4-201ENST00000265560 COA7Q96BR5 231 aa18.96■□□□□ 0.63
USP4-201ENST00000265560 ZBTB4Q9P1Z0 1013 aaPredicted RBP18.96■□□□□ 0.63
USP4-201ENST00000265560 MYH4Q9Y623 1939 aa18.96■□□□□ 0.63
USP4-201ENST00000265560 ENTPD3O75355 529 aa18.96■□□□□ 0.63
USP4-201ENST00000265560 ZYXQ15942 572 aaKnown RBP18.96■□□□□ 0.63
USP4-201ENST00000265560 AXDND1Q5T1B0 1012 aaPredicted RBP18.96■□□□□ 0.63
USP4-201ENST00000265560 ATL3Q6DD88 541 aa18.96■□□□□ 0.63
USP4-201ENST00000265560 CCDC73Q6ZRK6 1079 aa18.96■□□□□ 0.63
USP4-201ENST00000265560 FOXP4Q8IVH2 680 aaPredicted RBP18.96■□□□□ 0.63
USP4-201ENST00000265560 KCNG4Q8TDN1 519 aa18.96■□□□□ 0.63
USP4-201ENST00000265560 PSME4Q14997 1843 aa18.96■□□□□ 0.62
USP4-201ENST00000265560 YEATS4O95619 227 aa18.95■□□□□ 0.62
USP4-201ENST00000265560 ICA1Q05084 483 aa18.95■□□□□ 0.62
USP4-201ENST00000265560 ADALQ6DHV7 355 aa18.95■□□□□ 0.62
USP4-201ENST00000265560 TAL1P17542 331 aaPredicted RBP18.95■□□□□ 0.62
USP4-201ENST00000265560 ECE1P42892 770 aa18.95■□□□□ 0.62
USP4-201ENST00000265560 GNAQP50148 359 aa18.95■□□□□ 0.62
USP4-201ENST00000265560 CNOT7Q9UIV1 285 aaKnown RBP18.95■□□□□ 0.62
USP4-201ENST00000265560 TATDN1Q6P1N9 297 aa18.94■□□□□ 0.62
USP4-201ENST00000265560 MRPS27Q92552 414 aaKnown RBP18.94■□□□□ 0.62
USP4-201ENST00000265560 MYO1BO43795 1136 aa18.94■□□□□ 0.62
USP4-201ENST00000265560 NAPAP54920 295 aa18.94■□□□□ 0.62
USP4-201ENST00000265560 TNIP1Q15025 636 aa18.94■□□□□ 0.62
USP4-201ENST00000265560 MAP3K11Q16584 847 aa18.94■□□□□ 0.62
USP4-201ENST00000265560 FAM151AQ8WW52 585 aa18.94■□□□□ 0.62
USP4-201ENST00000265560 A0A1W2PRG0 241 aa18.93■□□□□ 0.62
USP4-201ENST00000265560 NOVP48745 357 aa18.93■□□□□ 0.62
USP4-201ENST00000265560 RASA3Q14644 834 aa18.93■□□□□ 0.62
USP4-201ENST00000265560 SHC4Q6S5L8 630 aa18.93■□□□□ 0.62
USP4-201ENST00000265560 USP49Q70CQ1 688 aa18.93■□□□□ 0.62
USP4-201ENST00000265560 ACER1Q8TDN7 264 aa18.93■□□□□ 0.62
USP4-201ENST00000265560 CCDC17Q96LX7 622 aa18.93■□□□□ 0.62
USP4-201ENST00000265560 USP17L10C9JJH3 530 aa18.93■□□□□ 0.62
USP4-201ENST00000265560 STXBP3O00186 592 aa18.93■□□□□ 0.62
USP4-201ENST00000265560 RRP36Q96EU6 259 aaKnown RBP18.93■□□□□ 0.62
USP4-201ENST00000265560 BRMS1Q9HCU9 246 aa18.93■□□□□ 0.62
USP4-201ENST00000265560 PLIN4Q96Q06 1357 aa18.92■□□□□ 0.62
USP4-201ENST00000265560 MCM7P33993 719 aa18.92■□□□□ 0.62
USP4-201ENST00000265560 ZNF543Q08ER8 600 aa18.92■□□□□ 0.62
USP4-201ENST00000265560 RILPL1Q5EBL4 403 aa18.92■□□□□ 0.62
USP4-201ENST00000265560 ADGRF4Q8IZF3 695 aa18.92■□□□□ 0.62
USP4-201ENST00000265560 ENGASEQ8NFI3 743 aa18.92■□□□□ 0.62
USP4-201ENST00000265560 CLSTN2Q9H4D0 955 aa18.92■□□□□ 0.62
USP4-201ENST00000265560 KANSL2Q9H9L4 492 aa18.92■□□□□ 0.62
USP4-201ENST00000265560 SEC63Q9UGP8 760 aaKnown RBP18.92■□□□□ 0.62
USP4-201ENST00000265560 PFKFB1P16118 471 aa18.92■□□□□ 0.62
USP4-201ENST00000265560 FAM160A1Q05DH4 1040 aa18.92■□□□□ 0.62
USP4-201ENST00000265560 DLK2Q6UY11 383 aa18.92■□□□□ 0.62
USP4-201ENST00000265560 BLIDQ8IZY5 108 aa18.92■□□□□ 0.62
USP4-201ENST00000265560 TNFRSF25Q93038 417 aa18.92■□□□□ 0.62
USP4-201ENST00000265560 VPS33BQ9H267 617 aa18.92■□□□□ 0.62
USP4-201ENST00000265560 KINO60870 393 aaKnown RBP18.91■□□□□ 0.62
USP4-201ENST00000265560 SLC1A4P43007 532 aa18.91■□□□□ 0.62
USP4-201ENST00000265560 PDILTQ8N807 584 aa18.91■□□□□ 0.62
USP4-201ENST00000265560 SDF4Q9BRK5 362 aa18.91■□□□□ 0.62
USP4-201ENST00000265560 GLIS2Q9BZE0 524 aaPredicted RBP18.91■□□□□ 0.62
USP4-201ENST00000265560 BARHL2Q9NY43 387 aa18.91■□□□□ 0.62
USP4-201ENST00000265560 IKQ13123 557 aaPredicted RBP18.91■□□□□ 0.62
USP4-201ENST00000265560 SLFN13Q68D06 897 aa18.91■□□□□ 0.62
USP4-201ENST00000265560 ISM2Q6H9L7 571 aa18.91■□□□□ 0.62
USP4-201ENST00000265560 FMR1NBQ8N0W7 255 aaPredicted RBP18.91■□□□□ 0.62
USP4-201ENST00000265560 SPZ1Q9BXG8 430 aa18.91■□□□□ 0.62
USP4-201ENST00000265560 JMJD4Q9H9V9 463 aa18.91■□□□□ 0.62
USP4-201ENST00000265560 DDX19AQ9NUU7 478 aaKnown RBP18.91■□□□□ 0.62
USP4-201ENST00000265560 F5H6K3 240 aa18.91■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms