RNA–Protein interactions for RNA: ENST00000262327.9

LIG3-201, Transcript of DNA ligase 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIG3, Length 3,055 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-201ENST00000262327 RHOXF2BP0C7M4 288 aa11.39□□□□□ -0.59
LIG3-201ENST00000262327 PSEN1P49768 467 aa11.39□□□□□ -0.59
LIG3-201ENST00000262327 HNRNPH2P55795 449 aaKnown RBP11.39□□□□□ -0.59
LIG3-201ENST00000262327 MCM6Q14566 821 aa11.39□□□□□ -0.59
LIG3-201ENST00000262327 SMC1AQ14683 1233 aaKnown RBP11.39□□□□□ -0.59
LIG3-201ENST00000262327 FAM47AQ5JRC9 791 aa11.39□□□□□ -0.59
LIG3-201ENST00000262327 NT5DC1Q5TFE4 455 aa11.39□□□□□ -0.59
LIG3-201ENST00000262327 AMIGO3Q86WK7 504 aa11.39□□□□□ -0.59
LIG3-201ENST00000262327 FCHSD1Q86WN1 690 aa11.39□□□□□ -0.59
LIG3-201ENST00000262327 RHOXF2Q9BQY4 288 aa11.39□□□□□ -0.59
LIG3-201ENST00000262327 ADGRG1Q9Y653 693 aa11.39□□□□□ -0.59
LIG3-201ENST00000262327 MCM7P33993 719 aa11.39□□□□□ -0.59
LIG3-201ENST00000262327 PTGDRQ13258 359 aa11.39□□□□□ -0.59
LIG3-201ENST00000262327 KIF4BQ2VIQ3 1234 aa11.39□□□□□ -0.59
LIG3-201ENST00000262327 CCDC152Q4G0S7 254 aa11.39□□□□□ -0.59
LIG3-201ENST00000262327 PLIN2Q99541 437 aa11.39□□□□□ -0.59
LIG3-201ENST00000262327 ARFGAP3Q9NP61 516 aa11.39□□□□□ -0.59
LIG3-201ENST00000262327 TAB2Q9NYJ8 693 aa11.39□□□□□ -0.59
LIG3-201ENST00000262327 CCDC196A0A1B0GTZ2 297 aa11.39□□□□□ -0.59
LIG3-201ENST00000262327 CYP2C19P33261 490 aa11.39□□□□□ -0.59
LIG3-201ENST00000262327 KRT2P35908 639 aa11.39□□□□□ -0.59
LIG3-201ENST00000262327 CHRNDQ07001 517 aa11.39□□□□□ -0.59
LIG3-201ENST00000262327 IFIT1BQ5T764 474 aaKnown RBP11.39□□□□□ -0.59
LIG3-201ENST00000262327 RRAGBQ5VZM2 374 aa11.39□□□□□ -0.59
LIG3-201ENST00000262327 RSRC2Q7L4I2 434 aaKnown RBP11.39□□□□□ -0.59
LIG3-201ENST00000262327 CEP131Q9UPN4 1083 aa11.39□□□□□ -0.59
LIG3-201ENST00000262327 DDX60Q8IY21 1712 aaKnown RBP11.39□□□□□ -0.59
LIG3-201ENST00000262327 ECM29Q5VYK3 1845 aa11.38□□□□□ -0.59
LIG3-201ENST00000262327 CUL4BQ13620 913 aa11.38□□□□□ -0.59
LIG3-201ENST00000262327 SPATA1Q5VX52 437 aa11.38□□□□□ -0.59
LIG3-201ENST00000262327 TPTE2Q6XPS3 522 aa11.38□□□□□ -0.59
LIG3-201ENST00000262327 PIK3AP1Q6ZUJ8 805 aa11.38□□□□□ -0.59
LIG3-201ENST00000262327 CNPY4Q8N129 248 aa11.38□□□□□ -0.59
LIG3-201ENST00000262327 SLC35F6Q8N357 371 aa11.38□□□□□ -0.59
LIG3-201ENST00000262327 GPR161Q8N6U8 529 aaKnown RBP11.38□□□□□ -0.59
LIG3-201ENST00000262327 FLAD1Q8NFF5 587 aa11.38□□□□□ -0.59
LIG3-201ENST00000262327 GOLGA1Q92805 767 aa11.38□□□□□ -0.59
LIG3-201ENST00000262327 ZKSCAN7Q9P0L1 754 aaPredicted RBP11.38□□□□□ -0.59
LIG3-201ENST00000262327 MAGEB6P1A0A0J9YX57 407 aa11.38□□□□□ -0.59
LIG3-201ENST00000262327 PPP1R3GB7ZBB8 358 aa11.38□□□□□ -0.59
LIG3-201ENST00000262327 N4BP3O15049 544 aa11.38□□□□□ -0.59
LIG3-201ENST00000262327 GYPCP04921 128 aa11.38□□□□□ -0.59
LIG3-201ENST00000262327 CHMP4BP1P59074 171 aa11.38□□□□□ -0.59
LIG3-201ENST00000262327 SF3B3Q15393 1217 aaKnown RBP11.38□□□□□ -0.59
LIG3-201ENST00000262327 SEC23AQ15436 765 aa11.38□□□□□ -0.59
LIG3-201ENST00000262327 LONRF2Q1L5Z9 754 aa11.38□□□□□ -0.59
LIG3-201ENST00000262327 RASGRP4Q8TDF6 673 aa11.38□□□□□ -0.59
LIG3-201ENST00000262327 ESR2Q92731 530 aa11.38□□□□□ -0.59
LIG3-201ENST00000262327 AKT1S1Q96B36 256 aa11.38□□□□□ -0.59
LIG3-201ENST00000262327 TRIM10Q9UDY6 481 aa11.38□□□□□ -0.59
LIG3-201ENST00000262327 ADD3Q9UEY8 706 aaKnown RBP11.38□□□□□ -0.59
LIG3-201ENST00000262327 H3BQF6 201 aa11.37□□□□□ -0.59
LIG3-201ENST00000262327 IGHMBP2P38935 993 aaKnown RBP11.37□□□□□ -0.59
LIG3-201ENST00000262327 ERFEQ4G0M1 354 aa11.37□□□□□ -0.59
LIG3-201ENST00000262327 GPIHBP1Q8IV16 184 aa11.37□□□□□ -0.59
LIG3-201ENST00000262327 PNKPQ96T60 521 aa11.37□□□□□ -0.59
LIG3-201ENST00000262327 SLF1Q9BQI6 1058 aa11.37□□□□□ -0.59
LIG3-201ENST00000262327 CALCOCO1Q9P1Z2 691 aa11.37□□□□□ -0.59
LIG3-201ENST00000262327 LRP5O75197 1615 aa11.37□□□□□ -0.59
LIG3-201ENST00000262327 GOLGA6L9A6NEM1 432 aa11.37□□□□□ -0.59
LIG3-201ENST00000262327 KIF5CO60282 957 aa11.37□□□□□ -0.59
LIG3-201ENST00000262327 TTC38Q5R3I4 469 aa11.37□□□□□ -0.59
LIG3-201ENST00000262327 KANK3Q6NY19 840 aa11.37□□□□□ -0.59
LIG3-201ENST00000262327 BICDL1Q6ZP65 573 aa11.37□□□□□ -0.59
LIG3-201ENST00000262327 NBPF5PQ86XG9 351 aaPredicted RBP11.37□□□□□ -0.59
LIG3-201ENST00000262327 CCDC24Q8N4L8 307 aa11.37□□□□□ -0.59
LIG3-201ENST00000262327 ZNF579Q8NAF0 562 aaKnown RBP11.37□□□□□ -0.59
LIG3-201ENST00000262327 ZSCAN10Q96SZ4 725 aaPredicted RBP11.37□□□□□ -0.59
LIG3-201ENST00000262327 NUP88Q99567 741 aaPredicted RBP11.37□□□□□ -0.59
LIG3-201ENST00000262327 FUT8Q9BYC5 575 aa11.37□□□□□ -0.59
LIG3-201ENST00000262327 AATFQ9NY61 560 aaKnown RBP eCLIP11.37□□□□□ -0.59
LIG3-201ENST00000262327 GDAQ9Y2T3 454 aa11.37□□□□□ -0.59
LIG3-201ENST00000262327 MFAP3LO75121 409 aa11.37□□□□□ -0.59
LIG3-201ENST00000262327 ERCC5P28715 1186 aaPredicted RBP11.37□□□□□ -0.59
LIG3-201ENST00000262327 ERVK-24P63145 666 aa11.37□□□□□ -0.59
LIG3-201ENST00000262327 KRT31Q15323 416 aa11.37□□□□□ -0.59
LIG3-201ENST00000262327 SPATA20Q8TB22 786 aa11.37□□□□□ -0.59
LIG3-201ENST00000262327 MTRQ99707 1265 aa11.37□□□□□ -0.59
LIG3-201ENST00000262327 HINFPQ9BQA5 517 aa11.37□□□□□ -0.59
LIG3-201ENST00000262327 RNF41Q9H4P4 317 aaPredicted RBP11.37□□□□□ -0.59
LIG3-201ENST00000262327 XDHP47989 1333 aa11.36□□□□□ -0.59
LIG3-201ENST00000262327 TRIM49BA6NDI0 452 aa11.36□□□□□ -0.59
LIG3-201ENST00000262327 USP17L12C9JPN9 530 aa11.36□□□□□ -0.59
LIG3-201ENST00000262327 USP17L21D6R901 530 aa11.36□□□□□ -0.59
LIG3-201ENST00000262327 MYO1BO43795 1136 aa11.36□□□□□ -0.59
LIG3-201ENST00000262327 N4BP1O75113 896 aaKnown RBP11.36□□□□□ -0.59
LIG3-201ENST00000262327 PHACTR2O75167 634 aa11.36□□□□□ -0.59
LIG3-201ENST00000262327 CYP2D6P10635 497 aa11.36□□□□□ -0.59
LIG3-201ENST00000262327 XBP1P17861 261 aa11.36□□□□□ -0.59
LIG3-201ENST00000262327 TXLNAP40222 546 aa11.36□□□□□ -0.59
LIG3-201ENST00000262327 CATIPQ7Z7H3 387 aa11.36□□□□□ -0.59
LIG3-201ENST00000262327 TRIML1Q8N9V2 468 aa11.36□□□□□ -0.59
LIG3-201ENST00000262327 PHF20Q9BVI0 1012 aa11.36□□□□□ -0.59
LIG3-201ENST00000262327 RNF26Q9BY78 433 aaPredicted RBP11.36□□□□□ -0.59
LIG3-201ENST00000262327 GYS1P13807 737 aa11.36□□□□□ -0.59
LIG3-201ENST00000262327 NFIXQ14938 502 aa11.36□□□□□ -0.59
LIG3-201ENST00000262327 IL17AQ16552 155 aa11.36□□□□□ -0.59
LIG3-201ENST00000262327 FILIP1LQ4L180 1135 aa11.36□□□□□ -0.59
LIG3-201ENST00000262327 C3orf67Q6ZVT6 689 aa11.36□□□□□ -0.59
LIG3-201ENST00000262327 TMTC2Q8N394 836 aa11.36□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms