RNA–Protein interactions for RNA: ENST00000260130.8

SDCBP-201, Transcript of syndecan binding protein, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SDCBP, Length 2,167 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBP-201ENST00000260130 TNS4Q8IZW8 715 aa19.7■□□□□ 0.74
SDCBP-201ENST00000260130 NCOA7Q8NI08 942 aa19.7■□□□□ 0.74
SDCBP-201ENST00000260130 ZSCAN10Q96SZ4 725 aaPredicted RBP19.7■□□□□ 0.74
SDCBP-201ENST00000260130 PAGR1Q9BTK6 254 aa19.7■□□□□ 0.74
SDCBP-201ENST00000260130 MYPNQ86TC9 1320 aa19.7■□□□□ 0.74
SDCBP-201ENST00000260130 PEX10O60683 326 aa19.7■□□□□ 0.74
SDCBP-201ENST00000260130 CTGFP29279 349 aa19.7■□□□□ 0.74
SDCBP-201ENST00000260130 PKN2Q16513 984 aaKnown RBP19.7■□□□□ 0.74
SDCBP-201ENST00000260130 STOX1Q6ZVD7 989 aa19.7■□□□□ 0.74
SDCBP-201ENST00000260130 RALYLQ86SE5 291 aaKnown RBP19.7■□□□□ 0.74
SDCBP-201ENST00000260130 GMCL1Q96IK5 515 aa19.7■□□□□ 0.74
SDCBP-201ENST00000260130 FMNL1O95466 1100 aaPredicted RBP19.69■□□□□ 0.74
SDCBP-201ENST00000260130 GNRH1P01148 92 aa19.69■□□□□ 0.74
SDCBP-201ENST00000260130 Q3C1V9 767 aa19.69■□□□□ 0.74
SDCBP-201ENST00000260130 RNF20Q5VTR2 975 aa19.69■□□□□ 0.74
SDCBP-201ENST00000260130 TRIM47Q96LD4 638 aa19.69■□□□□ 0.74
SDCBP-201ENST00000260130 MCOLN1Q9GZU1 580 aa19.69■□□□□ 0.74
SDCBP-201ENST00000260130 FBXO28Q9NVF7 368 aa19.69■□□□□ 0.74
SDCBP-201ENST00000260130 REC8O95072 547 aa19.68■□□□□ 0.74
SDCBP-201ENST00000260130 BMP3P12645 472 aa19.68■□□□□ 0.74
SDCBP-201ENST00000260130 MCCP23508 829 aa19.68■□□□□ 0.74
SDCBP-201ENST00000260130 FCGRTP55899 365 aa19.68■□□□□ 0.74
SDCBP-201ENST00000260130 ERVK-9P63128 1117 aa19.68■□□□□ 0.74
SDCBP-201ENST00000260130 ERVK-24P63145 666 aa19.68■□□□□ 0.74
SDCBP-201ENST00000260130 SAMD1Q6SPF0 538 aaPredicted RBP19.68■□□□□ 0.74
SDCBP-201ENST00000260130 CYB5R4Q7L1T6 521 aa19.68■□□□□ 0.74
SDCBP-201ENST00000260130 UBAC1Q9BSL1 405 aa19.68■□□□□ 0.74
SDCBP-201ENST00000260130 CNMDO75829 334 aa19.68■□□□□ 0.74
SDCBP-201ENST00000260130 SLC1A4P43007 532 aa19.68■□□□□ 0.74
SDCBP-201ENST00000260130 GSE1Q14687 1217 aa19.68■□□□□ 0.74
SDCBP-201ENST00000260130 ANKS1AQ92625 1134 aa19.68■□□□□ 0.74
SDCBP-201ENST00000260130 PPP1R9AQ9ULJ8 1098 aa19.68■□□□□ 0.74
SDCBP-201ENST00000260130 MYH4Q9Y623 1939 aa19.68■□□□□ 0.74
SDCBP-201ENST00000260130 TNKSO95271 1327 aa19.68■□□□□ 0.74
SDCBP-201ENST00000260130 MB21D1Q8N884 522 aa19.67■□□□□ 0.74
SDCBP-201ENST00000260130 ENAHQ8N8S7 591 aaPredicted RBP19.67■□□□□ 0.74
SDCBP-201ENST00000260130 ATG4CQ96DT6 458 aa19.67■□□□□ 0.74
SDCBP-201ENST00000260130 BTBD7Q9P203 1132 aa19.67■□□□□ 0.74
SDCBP-201ENST00000260130 ADAMTS5Q9UNA0 930 aa19.67■□□□□ 0.74
SDCBP-201ENST00000260130 HOXD10P28358 340 aa19.67■□□□□ 0.74
SDCBP-201ENST00000260130 PRPF38AQ8NAV1 312 aaKnown RBP19.67■□□□□ 0.74
SDCBP-201ENST00000260130 CHMP4CQ96CF2 233 aa19.67■□□□□ 0.74
SDCBP-201ENST00000260130 SLF1Q9BQI6 1058 aa19.67■□□□□ 0.74
SDCBP-201ENST00000260130 FEM1BQ9UK73 627 aa19.67■□□□□ 0.74
SDCBP-201ENST00000260130 MTMR7Q9Y216 660 aa19.67■□□□□ 0.74
SDCBP-201ENST00000260130 FBXO46Q6PJ61 603 aaPredicted RBP19.66■□□□□ 0.74
SDCBP-201ENST00000260130 PTPN22Q9Y2R2 807 aa19.66■□□□□ 0.74
SDCBP-201ENST00000260130 TMEM232C9JQI7 657 aa19.66■□□□□ 0.74
SDCBP-201ENST00000260130 TNPO2O14787 897 aaKnown RBP19.66■□□□□ 0.74
SDCBP-201ENST00000260130 CCNA1P78396 465 aa19.66■□□□□ 0.74
SDCBP-201ENST00000260130 DCAF4Q8WV16 495 aa19.66■□□□□ 0.74
SDCBP-201ENST00000260130 ISY1Q9ULR0 285 aaKnown RBP19.66■□□□□ 0.74
SDCBP-201ENST00000260130 VWA5AO00534 786 aa19.65■□□□□ 0.74
SDCBP-201ENST00000260130 KCTD1Q719H9 257 aa19.65■□□□□ 0.74
SDCBP-201ENST00000260130 MB21D2Q8IYB1 491 aaPredicted RBP19.65■□□□□ 0.74
SDCBP-201ENST00000260130 KAT14Q9H8E8 782 aa19.65■□□□□ 0.74
SDCBP-201ENST00000260130 SRRDQ9UH36 339 aa19.65■□□□□ 0.74
SDCBP-201ENST00000260130 ZKSCAN1P17029 563 aaPredicted RBP19.64■□□□□ 0.74
SDCBP-201ENST00000260130 PRMT2P55345 433 aa19.64■□□□□ 0.74
SDCBP-201ENST00000260130 SEC23AQ15436 765 aa19.64■□□□□ 0.74
SDCBP-201ENST00000260130 TSGA10IPQ3SY00 556 aa19.64■□□□□ 0.74
SDCBP-201ENST00000260130 CCAR1Q8IX12 1150 aaKnown RBP19.64■□□□□ 0.74
SDCBP-201ENST00000260130 PNMA1Q8ND90 353 aa19.64■□□□□ 0.74
SDCBP-201ENST00000260130 CHURC1Q8WUH1 139 aa19.64■□□□□ 0.74
SDCBP-201ENST00000260130 KIFC2Q96AC6 838 aa19.64■□□□□ 0.74
SDCBP-201ENST00000260130 COA7Q96BR5 231 aa19.64■□□□□ 0.74
SDCBP-201ENST00000260130 IFIT3O14879 490 aaKnown RBP19.64■□□□□ 0.73
SDCBP-201ENST00000260130 MAPK4P31152 587 aa19.64■□□□□ 0.73
SDCBP-201ENST00000260130 STAT2P52630 851 aa19.64■□□□□ 0.73
SDCBP-201ENST00000260130 BECN1Q14457 450 aa19.64■□□□□ 0.73
SDCBP-201ENST00000260130 IFIT1BQ5T764 474 aaKnown RBP19.64■□□□□ 0.73
SDCBP-201ENST00000260130 RASGRP2Q7LDG7 609 aa19.64■□□□□ 0.73
SDCBP-201ENST00000260130 CHST3Q7LGC8 479 aa19.64■□□□□ 0.73
SDCBP-201ENST00000260130 PORCNQ9H237 461 aa19.64■□□□□ 0.73
SDCBP-201ENST00000260130 ERICH2A1L162 156 aa19.63■□□□□ 0.73
SDCBP-201ENST00000260130 EPB41L2O43491 1005 aaKnown RBP19.63■□□□□ 0.73
SDCBP-201ENST00000260130 PLA2G6O60733 806 aa19.63■□□□□ 0.73
SDCBP-201ENST00000260130 PDHBP11177 359 aa19.63■□□□□ 0.73
SDCBP-201ENST00000260130 TMEM132BQ14DG7 1078 aa19.63■□□□□ 0.73
SDCBP-201ENST00000260130 SART3Q15020 963 aaKnown RBP19.63■□□□□ 0.73
SDCBP-201ENST00000260130 CCDC96Q2M329 555 aa19.63■□□□□ 0.73
SDCBP-201ENST00000260130 FAM160B2Q86V87 743 aa19.63■□□□□ 0.73
SDCBP-201ENST00000260130 RASEFQ8IZ41 740 aa19.63■□□□□ 0.73
SDCBP-201ENST00000260130 SPATC1LQ9H0A9 340 aa19.63■□□□□ 0.73
SDCBP-201ENST00000260130 RLFQ13129 1914 aa19.63■□□□□ 0.73
SDCBP-201ENST00000260130 HSPA4P34932 840 aa19.63■□□□□ 0.73
SDCBP-201ENST00000260130 ANTXR2P58335 489 aa19.63■□□□□ 0.73
SDCBP-201ENST00000260130 IKQ13123 557 aaPredicted RBP19.63■□□□□ 0.73
SDCBP-201ENST00000260130 PLS1Q14651 629 aa19.63■□□□□ 0.73
SDCBP-201ENST00000260130 SNHG28P0DPA3 235 aa19.62■□□□□ 0.73
SDCBP-201ENST00000260130 MCM5P33992 734 aa19.62■□□□□ 0.73
SDCBP-201ENST00000260130 PRKCZQ05513 592 aa19.62■□□□□ 0.73
SDCBP-201ENST00000260130 MOV10L1Q9BXT6 1211 aaKnown RBP19.62■□□□□ 0.73
SDCBP-201ENST00000260130 ZSWIM8A7E2V4 1837 aa19.62■□□□□ 0.73
SDCBP-201ENST00000260130 KRT32Q14532 448 aa19.61■□□□□ 0.73
SDCBP-201ENST00000260130 REPS2Q8NFH8 660 aa19.61■□□□□ 0.73
SDCBP-201ENST00000260130 KCNB2Q92953 911 aa19.61■□□□□ 0.73
SDCBP-201ENST00000260130 NEK1Q96PY6 1258 aa19.61■□□□□ 0.73
SDCBP-201ENST00000260130 UPF2Q9HAU5 1272 aaKnown RBP19.61■□□□□ 0.73
SDCBP-201ENST00000260130 GABRQQ9UN88 632 aa19.61■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms