RNA–Protein interactions for RNA: ENST00000253794.6

VPS25-201, Transcript of vacuolar protein sorting 25 homolog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS25, Length 1,101 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS25-201ENST00000253794 USP17L19D6RCP7 530 aa16.5■□□□□ 0.23
VPS25-201ENST00000253794 USP17L20D6RJB6 530 aa16.5■□□□□ 0.23
VPS25-201ENST00000253794 IGF2BP3O00425 579 aaKnown RBP eCLIP16.5■□□□□ 0.23
VPS25-201ENST00000253794 CALM1P0DP23 149 aa16.5■□□□□ 0.23
VPS25-201ENST00000253794 CALM2P0DP24 149 aa16.5■□□□□ 0.23
VPS25-201ENST00000253794 CALM3P0DP25 149 aa16.5■□□□□ 0.23
VPS25-201ENST00000253794 BMP3P12645 472 aa16.5■□□□□ 0.23
VPS25-201ENST00000253794 NEK4P51957 841 aa16.5■□□□□ 0.23
VPS25-201ENST00000253794 ZNF543Q08ER8 600 aa16.5■□□□□ 0.23
VPS25-201ENST00000253794 USP17L24Q0WX57 530 aa16.5■□□□□ 0.23
VPS25-201ENST00000253794 GPATCH4Q5T3I0 446 aaKnown RBP16.5■□□□□ 0.23
VPS25-201ENST00000253794 BTNL9Q6UXG8 535 aa16.5■□□□□ 0.23
VPS25-201ENST00000253794 LBX2Q6XYB7 198 aa16.5■□□□□ 0.23
VPS25-201ENST00000253794 GADL1Q6ZQY3 521 aa16.5■□□□□ 0.23
VPS25-201ENST00000253794 CATSPERGQ6ZRH7 1159 aa16.5■□□□□ 0.23
VPS25-201ENST00000253794 FAM43AQ8N2R8 423 aa16.5■□□□□ 0.23
VPS25-201ENST00000253794 BRF1Q92994 677 aa16.5■□□□□ 0.23
VPS25-201ENST00000253794 CFHR5Q9BXR6 569 aa16.5■□□□□ 0.23
VPS25-201ENST00000253794 RPAP3Q9H6T3 665 aaPredicted RBP16.5■□□□□ 0.23
VPS25-201ENST00000253794 BRPF3Q9ULD4 1205 aa16.5■□□□□ 0.23
VPS25-201ENST00000253794 ALDH1A1P00352 501 aa16.49■□□□□ 0.23
VPS25-201ENST00000253794 SLC1A4P43007 532 aa16.49■□□□□ 0.23
VPS25-201ENST00000253794 AK2P54819 239 aa16.49■□□□□ 0.23
VPS25-201ENST00000253794 GRM4Q14833 912 aa16.49■□□□□ 0.23
VPS25-201ENST00000253794 PPP2R5BQ15173 497 aa16.49■□□□□ 0.23
VPS25-201ENST00000253794 ASPRV1Q53RT3 343 aa16.49■□□□□ 0.23
VPS25-201ENST00000253794 FAM83BQ5T0W9 1011 aa16.49■□□□□ 0.23
VPS25-201ENST00000253794 OTUD7BQ6GQQ9 843 aa16.49■□□□□ 0.23
VPS25-201ENST00000253794 SPICE1Q8N0Z3 855 aa16.49■□□□□ 0.23
VPS25-201ENST00000253794 ZNF274Q96GC6 653 aaPredicted RBP16.49■□□□□ 0.23
VPS25-201ENST00000253794 SLC12A7Q9Y666 1083 aa16.49■□□□□ 0.23
VPS25-201ENST00000253794 PALM3A6NDB9 673 aaPredicted RBP16.48■□□□□ 0.23
VPS25-201ENST00000253794 PDHXO00330 501 aa16.48■□□□□ 0.23
VPS25-201ENST00000253794 FGD1P98174 961 aa16.48■□□□□ 0.23
VPS25-201ENST00000253794 GRM1Q13255 1194 aa16.48■□□□□ 0.23
VPS25-201ENST00000253794 NFXL1Q6ZNB6 911 aa16.48■□□□□ 0.23
VPS25-201ENST00000253794 RASGRP2Q7LDG7 609 aa16.48■□□□□ 0.23
VPS25-201ENST00000253794 MAD2L2Q9UI95 211 aa16.48■□□□□ 0.23
VPS25-201ENST00000253794 FEM1BQ9UK73 627 aa16.48■□□□□ 0.23
VPS25-201ENST00000253794 PNMA3Q9UL41 463 aa16.48■□□□□ 0.23
VPS25-201ENST00000253794 RLFQ13129 1914 aa16.48■□□□□ 0.23
VPS25-201ENST00000253794 ADGRA2Q96PE1 1338 aa16.47■□□□□ 0.23
VPS25-201ENST00000253794 KLF18A0A0U1RQI7 1052 aa16.47■□□□□ 0.23
VPS25-201ENST00000253794 APOBRQ0VD83 1088 aa16.47■□□□□ 0.23
VPS25-201ENST00000253794 SYNE3Q6ZMZ3 975 aa16.47■□□□□ 0.23
VPS25-201ENST00000253794 FAM160B2Q86V87 743 aa16.47■□□□□ 0.23
VPS25-201ENST00000253794 GTF3C2Q8WUA4 911 aaPredicted RBP16.47■□□□□ 0.23
VPS25-201ENST00000253794 NUP88Q99567 741 aaPredicted RBP16.47■□□□□ 0.23
VPS25-201ENST00000253794 ASCC2Q9H1I8 757 aaPredicted RBP16.47■□□□□ 0.23
VPS25-201ENST00000253794 ADAMTS5Q9UNA0 930 aa16.47■□□□□ 0.23
VPS25-201ENST00000253794 HPS5Q9UPZ3 1129 aa16.47■□□□□ 0.23
VPS25-201ENST00000253794 PARP14Q460N5 1801 aa16.47■□□□□ 0.23
VPS25-201ENST00000253794 A0A0G2JMZ2 1700 aa16.46■□□□□ 0.23
VPS25-201ENST00000253794 ZBTB43O43298 467 aa16.46■□□□□ 0.23
VPS25-201ENST00000253794 PARP1P09874 1014 aaKnown RBP16.46■□□□□ 0.23
VPS25-201ENST00000253794 OSBPP22059 807 aa16.46■□□□□ 0.23
VPS25-201ENST00000253794 SMARCA1P28370 1054 aa16.46■□□□□ 0.23
VPS25-201ENST00000253794 PDIA3P30101 505 aaKnown RBP16.46■□□□□ 0.23
VPS25-201ENST00000253794 DSG3P32926 999 aa16.46■□□□□ 0.23
VPS25-201ENST00000253794 KIF5BP33176 963 aa16.46■□□□□ 0.23
VPS25-201ENST00000253794 STAT2P52630 851 aa16.46■□□□□ 0.23
VPS25-201ENST00000253794 COG2Q14746 738 aa16.46■□□□□ 0.23
VPS25-201ENST00000253794 KCTD1Q719H9 257 aa16.46■□□□□ 0.23
VPS25-201ENST00000253794 JMYQ8N9B5 988 aa16.46■□□□□ 0.23
VPS25-201ENST00000253794 FANCBQ8NB91 859 aa16.46■□□□□ 0.23
VPS25-201ENST00000253794 CHURC1Q8WUH1 139 aa16.46■□□□□ 0.23
VPS25-201ENST00000253794 PARK7Q99497 189 aaKnown RBP16.46■□□□□ 0.23
VPS25-201ENST00000253794 SLF1Q9BQI6 1058 aa16.46■□□□□ 0.23
VPS25-201ENST00000253794 SAGE1Q9NXZ1 904 aa16.46■□□□□ 0.23
VPS25-201ENST00000253794 HOXC10Q9NYD6 342 aa16.46■□□□□ 0.23
VPS25-201ENST00000253794 PPP1R9AQ9ULJ8 1098 aa16.46■□□□□ 0.23
VPS25-201ENST00000253794 PCNTO95613 3336 aa16.45■□□□□ 0.22
VPS25-201ENST00000253794 SPDYE16A6NNV3 312 aaPredicted RBP16.45■□□□□ 0.22
VPS25-201ENST00000253794 TMEM232C9JQI7 657 aa16.45■□□□□ 0.22
VPS25-201ENST00000253794 CA12O43570 354 aa16.45■□□□□ 0.22
VPS25-201ENST00000253794 ST18O60284 1047 aa16.45■□□□□ 0.22
VPS25-201ENST00000253794 FDX1P10109 184 aa16.45■□□□□ 0.22
VPS25-201ENST00000253794 GNAQP50148 359 aa16.45■□□□□ 0.22
VPS25-201ENST00000253794 HERVK_113P62684 666 aa16.45■□□□□ 0.22
VPS25-201ENST00000253794 IRX3P78415 501 aaPredicted RBP16.45■□□□□ 0.22
VPS25-201ENST00000253794 MAP2K1Q02750 393 aaPredicted RBP16.45■□□□□ 0.22
VPS25-201ENST00000253794 PRPF38AQ8NAV1 312 aaKnown RBP16.45■□□□□ 0.22
VPS25-201ENST00000253794 CTCFLQ8NI51 663 aaPredicted RBP16.45■□□□□ 0.22
VPS25-201ENST00000253794 LZTS2Q9BRK4 669 aa16.45■□□□□ 0.22
VPS25-201ENST00000253794 MYL10Q9BUA6 226 aa16.45■□□□□ 0.22
VPS25-201ENST00000253794 TANGO6Q9C0B7 1094 aa16.45■□□□□ 0.22
VPS25-201ENST00000253794 RBM28Q9NW13 759 aaKnown RBP16.45■□□□□ 0.22
VPS25-201ENST00000253794 TPCN1Q9ULQ1 816 aa16.45■□□□□ 0.22
VPS25-201ENST00000253794 GOLGA8BA8MQT2 603 aa16.44■□□□□ 0.22
VPS25-201ENST00000253794 RAD21O60216 631 aa16.44■□□□□ 0.22
VPS25-201ENST00000253794 FLOT1O75955 427 aa16.44■□□□□ 0.22
VPS25-201ENST00000253794 MCM2P49736 904 aa16.44■□□□□ 0.22
VPS25-201ENST00000253794 CCDC96Q2M329 555 aa16.44■□□□□ 0.22
VPS25-201ENST00000253794 MICU3Q86XE3 530 aa16.44■□□□□ 0.22
VPS25-201ENST00000253794 STAG2Q8N3U4 1231 aa16.44■□□□□ 0.22
VPS25-201ENST00000253794 MB21D1Q8N884 522 aa16.44■□□□□ 0.22
VPS25-201ENST00000253794 NUP133Q8WUM0 1156 aa16.44■□□□□ 0.22
VPS25-201ENST00000253794 P2RX7Q99572 595 aaKnown RBP16.44■□□□□ 0.22
VPS25-201ENST00000253794 FAM217BQ9NTX9 383 aaPredicted RBP16.44■□□□□ 0.22
VPS25-201ENST00000253794 FBXO28Q9NVF7 368 aa16.44■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms