RNA–Protein interactions for RNA: ENST00000253024.9

TRIM28-201, Transcript of tripartite motif containing 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM28, Length 2,960 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-201ENST00000253024 STAT6P42226 847 aa24.12■■□□□ 1.45
TRIM28-201ENST00000253024 BSDC1Q9NW68 430 aaPredicted RBP24.12■■□□□ 1.45
TRIM28-201ENST00000253024 CHD4Q14839 1912 aa24.11■■□□□ 1.45
TRIM28-201ENST00000253024 FILIP1LQ4L180 1135 aa24.11■■□□□ 1.45
TRIM28-201ENST00000253024 KIFC2Q96AC6 838 aa24.11■■□□□ 1.45
TRIM28-201ENST00000253024 ADGRG1Q9Y653 693 aa24.11■■□□□ 1.45
TRIM28-201ENST00000253024 MYH13Q9UKX3 1938 aa24.11■■□□□ 1.45
TRIM28-201ENST00000253024 UBXN1Q04323 297 aa24.11■■□□□ 1.45
TRIM28-201ENST00000253024 SLC35F6Q8N357 371 aa24.11■■□□□ 1.45
TRIM28-201ENST00000253024 SH3RF3Q8TEJ3 882 aaPredicted RBP24.11■■□□□ 1.45
TRIM28-201ENST00000253024 ZBTB22O15209 634 aa24.1■■□□□ 1.45
TRIM28-201ENST00000253024 PRCPP42785 496 aa24.1■■□□□ 1.45
TRIM28-201ENST00000253024 UBE4AQ14139 1066 aa24.1■■□□□ 1.45
TRIM28-201ENST00000253024 MCM6Q14566 821 aa24.1■■□□□ 1.45
TRIM28-201ENST00000253024 IQUBQ8NA54 791 aa24.1■■□□□ 1.45
TRIM28-201ENST00000253024 ARGLU1Q9NWB6 273 aaPredicted RBP24.1■■□□□ 1.45
TRIM28-201ENST00000253024 PNMA1Q8ND90 353 aa24.1■■□□□ 1.45
TRIM28-201ENST00000253024 GUCA1BQ9UMX6 200 aa24.1■■□□□ 1.45
TRIM28-201ENST00000253024 MRFAP1Q9Y605 127 aa24.1■■□□□ 1.45
TRIM28-201ENST00000253024 ZNF804BA4D1E1 1349 aa24.1■■□□□ 1.45
TRIM28-201ENST00000253024 EIF6P56537 245 aaKnown RBP24.09■■□□□ 1.45
TRIM28-201ENST00000253024 NEK11Q8NG66 645 aa24.09■■□□□ 1.45
TRIM28-201ENST00000253024 NLRP3Q96P20 1036 aa24.09■■□□□ 1.45
TRIM28-201ENST00000253024 CICQ96RK0 1608 aaPredicted RBP24.09■■□□□ 1.45
TRIM28-201ENST00000253024 DISP2A7MBM2 1401 aa24.09■■□□□ 1.45
TRIM28-201ENST00000253024 NKRFO15226 690 aaKnown RBP eCLIP24.09■■□□□ 1.454e-8■□□□□ 11.1
TRIM28-201ENST00000253024 ERVK-24P63145 666 aa24.09■■□□□ 1.45
TRIM28-201ENST00000253024 SETDB2Q96T68 719 aa24.09■■□□□ 1.45
TRIM28-201ENST00000253024 IL17RBQ9NRM6 502 aa24.09■■□□□ 1.45
TRIM28-201ENST00000253024 MFAP3LO75121 409 aa24.09■■□□□ 1.45
TRIM28-201ENST00000253024 ERCC5P28715 1186 aaPredicted RBP24.09■■□□□ 1.45
TRIM28-201ENST00000253024 KRT9P35527 623 aa24.09■■□□□ 1.45
TRIM28-201ENST00000253024 KLK7P49862 253 aa24.09■■□□□ 1.45
TRIM28-201ENST00000253024 MAP3K9P80192 1104 aa24.09■■□□□ 1.45
TRIM28-201ENST00000253024 ATP2C1P98194 919 aaPredicted RBP24.09■■□□□ 1.45
TRIM28-201ENST00000253024 NFIXQ14938 502 aa24.09■■□□□ 1.45
TRIM28-201ENST00000253024 RCSD1Q6JBY9 416 aa24.09■■□□□ 1.45
TRIM28-201ENST00000253024 SPATA20Q8TB22 786 aa24.09■■□□□ 1.45
TRIM28-201ENST00000253024 TNFRSF25Q93038 417 aa24.09■■□□□ 1.45
TRIM28-201ENST00000253024 GDAP1L1Q96MZ0 367 aa24.09■■□□□ 1.45
TRIM28-201ENST00000253024 DDX60Q8IY21 1712 aaKnown RBP24.08■■□□□ 1.45
TRIM28-201ENST00000253024 SPATA31A1Q5TZJ5 1347 aa24.08■■□□□ 1.45
TRIM28-201ENST00000253024 UTRNP46939 3433 aa24.08■■□□□ 1.45
TRIM28-201ENST00000253024 CCDC194A0A1B0GVG4 234 aa24.08■■□□□ 1.44
TRIM28-201ENST00000253024 KCNJ6P48051 423 aa24.08■■□□□ 1.44
TRIM28-201ENST00000253024 TRIML1Q8N9V2 468 aa24.08■■□□□ 1.44
TRIM28-201ENST00000253024 AK7Q96M32 723 aa24.08■■□□□ 1.44
TRIM28-201ENST00000253024 BRIP1Q9BX63 1249 aa24.08■■□□□ 1.44
TRIM28-201ENST00000253024 ANAPC4Q9UJX5 808 aa24.08■■□□□ 1.44
TRIM28-201ENST00000253024 MYH6P13533 1939 aa24.07■■□□□ 1.44
TRIM28-201ENST00000253024 EFCAB8A8MWE9 144 aa24.07■■□□□ 1.44
TRIM28-201ENST00000253024 KCNJ18B7U540 433 aa24.07■■□□□ 1.44
TRIM28-201ENST00000253024 ST5P78524 1137 aa24.07■■□□□ 1.44
TRIM28-201ENST00000253024 PAK1Q13153 545 aa24.07■■□□□ 1.44
TRIM28-201ENST00000253024 KCNJ12Q14500 433 aa24.07■■□□□ 1.44
TRIM28-201ENST00000253024 FERMT2Q96AC1 680 aa24.07■■□□□ 1.44
TRIM28-201ENST00000253024 PCMTD1Q96MG8 357 aaPredicted RBP24.07■■□□□ 1.44
TRIM28-201ENST00000253024 RBM28Q9NW13 759 aaKnown RBP24.07■■□□□ 1.44
TRIM28-201ENST00000253024 KIF5CO60282 957 aa24.07■■□□□ 1.44
TRIM28-201ENST00000253024 RPN1P04843 607 aaKnown RBP24.07■■□□□ 1.44
TRIM28-201ENST00000253024 NCAPH2Q6IBW4 605 aa24.07■■□□□ 1.44
TRIM28-201ENST00000253024 HDAC6Q9UBN7 1215 aa24.07■■□□□ 1.44
TRIM28-201ENST00000253024 TSPY3P0CV98 308 aa24.06■■□□□ 1.44
TRIM28-201ENST00000253024 TSPY8P0CW00 308 aa24.06■■□□□ 1.44
TRIM28-201ENST00000253024 LETM2Q2VYF4 491 aa24.06■■□□□ 1.44
TRIM28-201ENST00000253024 SH3RF1Q7Z6J0 888 aa24.06■■□□□ 1.44
TRIM28-201ENST00000253024 CLEC10AQ8IUN9 316 aa24.06■■□□□ 1.44
TRIM28-201ENST00000253024 BLIDQ8IZY5 108 aa24.06■■□□□ 1.44
TRIM28-201ENST00000253024 KDM4FA0A1W2PPD8 638 aa24.06■■□□□ 1.44
TRIM28-201ENST00000253024 SLC35G1Q2M3R5 365 aa24.06■■□□□ 1.44
TRIM28-201ENST00000253024 GSDMAQ96QA5 445 aa24.06■■□□□ 1.44
TRIM28-201ENST00000253024 PHACTR2O75167 634 aa24.06■■□□□ 1.44
TRIM28-201ENST00000253024 COPB1P53618 953 aaKnown RBP24.06■■□□□ 1.44
TRIM28-201ENST00000253024 UBA5Q9GZZ9 404 aa24.06■■□□□ 1.44
TRIM28-201ENST00000253024 RAD21O60216 631 aa24.05■■□□□ 1.44
TRIM28-201ENST00000253024 SRGAP2O75044 1071 aa24.05■■□□□ 1.44
TRIM28-201ENST00000253024 SLURP2P0DP57 97 aa24.05■■□□□ 1.44
TRIM28-201ENST00000253024 E2F4Q16254 413 aa24.05■■□□□ 1.44
TRIM28-201ENST00000253024 CCDC178Q5BJE1 867 aa24.05■■□□□ 1.44
TRIM28-201ENST00000253024 PDXDC2PQ6P474 469 aa24.05■■□□□ 1.44
TRIM28-201ENST00000253024 LRRC15Q8TF66 581 aa24.05■■□□□ 1.44
TRIM28-201ENST00000253024 CAPZA3Q96KX2 299 aa24.05■■□□□ 1.44
TRIM28-201ENST00000253024 CHMP4BP1P59074 171 aa24.05■■□□□ 1.44
TRIM28-201ENST00000253024 PFKFB3Q16875 520 aaPredicted RBP24.05■■□□□ 1.44
TRIM28-201ENST00000253024 CDKAL1Q5VV42 579 aa24.05■■□□□ 1.44
TRIM28-201ENST00000253024 USP17L2Q6R6M4 530 aa24.05■■□□□ 1.44
TRIM28-201ENST00000253024 SRRTQ9BXP5 876 aaKnown RBP24.05■■□□□ 1.44
TRIM28-201ENST00000253024 CYTH3O43739 400 aa24.04■■□□□ 1.44
TRIM28-201ENST00000253024 ZPR1O75312 459 aa24.04■■□□□ 1.44
TRIM28-201ENST00000253024 OAS2P29728 719 aaKnown RBP24.04■■□□□ 1.44
TRIM28-201ENST00000253024 MRPS25P82663 173 aaKnown RBP24.04■■□□□ 1.44
TRIM28-201ENST00000253024 CC2D1AQ6P1N0 951 aaPredicted RBP24.04■■□□□ 1.44
TRIM28-201ENST00000253024 GJA10Q969M2 543 aa24.04■■□□□ 1.44
TRIM28-201ENST00000253024 TRIM47Q96LD4 638 aa24.04■■□□□ 1.44
TRIM28-201ENST00000253024 C8orf37Q96NL8 207 aa24.04■■□□□ 1.44
TRIM28-201ENST00000253024 DDX52Q9Y2R4 599 aaKnown RBP eCLIP24.04■■□□□ 1.448e-9■□□□□ 9.2
TRIM28-201ENST00000253024 TBC1D8O95759 1140 aa24.04■■□□□ 1.44
TRIM28-201ENST00000253024 UBA7P41226 1012 aa24.04■■□□□ 1.44
TRIM28-201ENST00000253024 GABPB1Q06547 395 aaPredicted RBP24.04■■□□□ 1.44
TRIM28-201ENST00000253024 FBXO33Q7Z6M2 555 aa24.04■■□□□ 1.44
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms