RNA–Protein interactions for RNA: YML031W

NDC1, Transcript of Subunit of the transmembrane ring of the nuclear pore complex (NPC), yeast

Gene NDC1, Length 1,968 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
NDC1	YML031W	PMR1	P13586	950 aa		5.21	□□□□□ -1.58
NDC1	YML031W	EMC1	P25574	760 aa		5.21	□□□□□ -1.58
NDC1	YML031W	AEP1	P32493	518 aa		5.21	□□□□□ -1.58
NDC1	YML031W	SET5	P38890	526 aa	Known RBP	5.21	□□□□□ -1.58
NDC1	YML031W	RPL34B	P40525	121 aa	Known RBP	5.21	□□□□□ -1.58
NDC1	YML031W	CDC14	Q00684	551 aa		5.21	□□□□□ -1.58
NDC1	YML031W	RSC4	Q02206	625 aa		5.21	□□□□□ -1.58
NDC1	YML031W	EGD1	Q02642	157 aa	Known RBP	5.21	□□□□□ -1.58
NDC1	YML031W	UFO1	Q04511	668 aa		5.21	□□□□□ -1.58
NDC1	YML031W	TRM8	Q12009	286 aa		5.21	□□□□□ -1.58
NDC1	YML031W	TGL5	Q12043	749 aa		5.21	□□□□□ -1.58
NDC1	YML031W	ARD1	P07347	238 aa	Predicted RBP	5.2	□□□□□ -1.58
NDC1	YML031W	SFL1	P20134	766 aa		5.2	□□□□□ -1.58
NDC1	YML031W	SCL1	P21243	252 aa	Known RBP	5.2	□□□□□ -1.58
NDC1	YML031W	EPT1	P22140	391 aa		5.2	□□□□□ -1.58
NDC1	YML031W	SLY1	P22213	666 aa		5.2	□□□□□ -1.58
NDC1	YML031W	RAD5	P32849	1169 aa	Predicted RBP	5.2	□□□□□ -1.58
NDC1	YML031W	IML3	P38265	245 aa		5.2	□□□□□ -1.58
NDC1	YML031W	SPP381	P38282	291 aa	Predicted RBP	5.2	□□□□□ -1.58
NDC1	YML031W	RRT2	P38332	387 aa		5.2	□□□□□ -1.58
NDC1	YML031W	YBR259W	P38338	688 aa		5.2	□□□□□ -1.58
NDC1	YML031W	FLC2	P39719	783 aa		5.2	□□□□□ -1.58
NDC1	YML031W	YAL037W	P39728	267 aa		5.2	□□□□□ -1.58
NDC1	YML031W	RGD2	P43556	714 aa		5.2	□□□□□ -1.58
NDC1	YML031W	BIR1	P47134	954 aa		5.2	□□□□□ -1.58
NDC1	YML031W	COG1	P53079	417 aa		5.2	□□□□□ -1.58
NDC1	YML031W	BTN2	P53286	410 aa		5.2	□□□□□ -1.58
NDC1	YML031W	HOT1	Q03213	719 aa		5.2	□□□□□ -1.58
NDC1	YML031W	GSF2	Q04697	403 aa	Known RBP	5.2	□□□□□ -1.58
NDC1	YML031W	CIA1	Q05583	330 aa		5.2	□□□□□ -1.58
NDC1	YML031W	PLB3	Q08108	686 aa		5.2	□□□□□ -1.58
NDC1	YML031W	SEC39	Q12745	709 aa		5.2	□□□□□ -1.58
NDC1	YML031W	FRT1	Q99332	602 aa		5.2	□□□□□ -1.58
NDC1	YML031W	APA1	P16550	321 aa	Known RBP	5.2	□□□□□ -1.58
NDC1	YML031W	ARG1	P22768	420 aa		5.2	□□□□□ -1.58
NDC1	YML031W	RFA2	P26754	273 aa	Known RBP	5.2	□□□□□ -1.58
NDC1	YML031W	BEM1	P29366	551 aa		5.2	□□□□□ -1.58
NDC1	YML031W	PDB1	P32473	366 aa	Known RBP	5.2	□□□□□ -1.58
NDC1	YML031W	SPS19	P32573	292 aa	Known RBP	5.2	□□□□□ -1.58
NDC1	YML031W	TFC3	P34111	1160 aa		5.2	□□□□□ -1.58
NDC1	YML031W	ECM2	P38241	364 aa	Known RBP	5.2	□□□□□ -1.58
NDC1	YML031W	DIA4	P38705	446 aa	Predicted RBP	5.2	□□□□□ -1.58
NDC1	YML031W	ARG2	P40360	574 aa		5.2	□□□□□ -1.58
NDC1	YML031W	MND2	P40577	368 aa		5.2	□□□□□ -1.58
NDC1	YML031W	ZIM17	P42844	174 aa		5.2	□□□□□ -1.58
NDC1	YML031W	ALR2	P43553	858 aa		5.2	□□□□□ -1.58
NDC1	YML031W	HXT16	P47185	567 aa		5.2	□□□□□ -1.58
NDC1	YML031W	HXT15	P54854	567 aa		5.2	□□□□□ -1.58
NDC1	YML031W	NRT1	Q08485	598 aa		5.2	□□□□□ -1.58
NDC1	YML031W	YLL056C	Q12177	298 aa		5.2	□□□□□ -1.58
NDC1	YML031W	TUB3	P09734	445 aa	Known RBP	5.19	□□□□□ -1.58
NDC1	YML031W	PMS1	P14242	873 aa		5.19	□□□□□ -1.58
NDC1	YML031W	ACO1	P19414	778 aa	Known RBP RIP-Chip data	5.19	□□□□□ -1.58	not detected
NDC1	YML031W	CLN1	P20437	546 aa		5.19	□□□□□ -1.58
NDC1	YML031W	SEC15	P22224	910 aa		5.19	□□□□□ -1.58
NDC1	YML031W	PLC1	P32383	869 aa		5.19	□□□□□ -1.58
NDC1	YML031W	YBL055C	P34220	418 aa	Predicted RBP	5.19	□□□□□ -1.58
NDC1	YML031W	PIM1	P36775	1133 aa		5.19	□□□□□ -1.58
NDC1	YML031W	OLA1	P38219	394 aa	Known RBP	5.19	□□□□□ -1.58
NDC1	YML031W	CEM1	P39525	442 aa		5.19	□□□□□ -1.58
NDC1	YML031W	SAW1	P39735	261 aa		5.19	□□□□□ -1.58
NDC1	YML031W	SLX8	P40072	274 aa		5.19	□□□□□ -1.58
NDC1	YML031W	RIO2	P40160	425 aa	Known RBP	5.19	□□□□□ -1.58
NDC1	YML031W	SAP4	P53036	818 aa		5.19	□□□□□ -1.58
NDC1	YML031W	GND2	P53319	492 aa		5.19	□□□□□ -1.58
NDC1	YML031W	SIW14	P53965	281 aa		5.19	□□□□□ -1.58
NDC1	YML031W	EMI1	Q04406	187 aa		5.19	□□□□□ -1.58
NDC1	YML031W	YDR278C	Q05612	105 aa		5.19	□□□□□ -1.58
NDC1	YML031W	YOL036W	Q08206	761 aa		5.19	□□□□□ -1.58
NDC1	YML031W	ERG11	P10614	530 aa		5.18	□□□□□ -1.58
NDC1	YML031W	CDC10	P25342	322 aa	Known RBP	5.18	□□□□□ -1.58
NDC1	YML031W	PHO11	P35842	467 aa		5.18	□□□□□ -1.58
NDC1	YML031W	PHO12	P38693	467 aa		5.18	□□□□□ -1.58
NDC1	YML031W	CYC2	P38909	366 aa		5.18	□□□□□ -1.58
NDC1	YML031W	CCT2	P39076	527 aa	Known RBP	5.18	□□□□□ -1.58
NDC1	YML031W	YAT2	P40017	923 aa		5.18	□□□□□ -1.58
NDC1	YML031W	TES1	P41903	349 aa	Known RBP	5.18	□□□□□ -1.58
NDC1	YML031W	YNL320W	P42840	284 aa		5.18	□□□□□ -1.58
NDC1	YML031W	YJR039W	P47107	1121 aa		5.18	□□□□□ -1.58
NDC1	YML031W	BRO1	P48582	844 aa		5.18	□□□□□ -1.58
NDC1	YML031W	MET14	Q02196	202 aa		5.18	□□□□□ -1.58
NDC1	YML031W	DIG1	Q03063	452 aa	Known RBP	5.18	□□□□□ -1.58
NDC1	YML031W	RSM10	Q03201	203 aa		5.18	□□□□□ -1.58
NDC1	YML031W	YMR160W	Q03823	816 aa		5.18	□□□□□ -1.58
NDC1	YML031W	ARP9	Q05123	467 aa		5.18	□□□□□ -1.58
NDC1	YML031W	ERF2	Q06551	359 aa		5.18	□□□□□ -1.58
NDC1	YML031W	MCP2	Q06567	569 aa		5.18	□□□□□ -1.58
NDC1	YML031W	AI5_ALPHA	Q9ZZX1	630 aa		5.18	□□□□□ -1.58
NDC1	YML031W	TRA1	P38811	3744 aa		5.18	□□□□□ -1.58
NDC1	YML031W	CPA1	P07258	411 aa	Known RBP	5.18	□□□□□ -1.58
NDC1	YML031W	YSP3	P25036	478 aa		5.18	□□□□□ -1.58
NDC1	YML031W	PHO84	P25297	587 aa	Known RBP	5.18	□□□□□ -1.58
NDC1	YML031W	OAF3	P36023	863 aa		5.18	□□□□□ -1.58
NDC1	YML031W	GMH1	P36125	273 aa		5.18	□□□□□ -1.58
NDC1	YML031W	TIM17	P39515	158 aa		5.18	□□□□□ -1.58
NDC1	YML031W	CFD1	P40558	293 aa		5.18	□□□□□ -1.58
NDC1	YML031W	YJR142W	P47173	342 aa		5.18	□□□□□ -1.58
NDC1	YML031W	YML6	P51998	286 aa		5.18	□□□□□ -1.58
NDC1	YML031W	FRE4	P53746	719 aa		5.18	□□□□□ -1.58
NDC1	YML031W	RLI1	Q03195	608 aa	Known RBP	5.18	□□□□□ -1.58

Retrieved 100 of 5,963 RNA–protein pairs in 27.5 ms