RNA–Protein interactions for RNA: ENST00000637985.1

CLN3-264, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 764 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-264ENST00000637985 TMEM39AQ9NV64 488 aa20.05■□□□□ 0.8
CLN3-264ENST00000637985 PQBP1O60828 265 aaKnown RBP20.04■□□□□ 0.8
CLN3-264ENST00000637985 ARID4AP29374 1257 aaPredicted RBP20.04■□□□□ 0.8
CLN3-264ENST00000637985 PBX2P40425 430 aa20.04■□□□□ 0.8
CLN3-264ENST00000637985 TFCP2Q12800 502 aa20.04■□□□□ 0.8
CLN3-264ENST00000637985 IL27Q8NEV9 243 aa20.04■□□□□ 0.8
CLN3-264ENST00000637985 LRP2BPQ9P2M1 347 aa20.04■□□□□ 0.8
CLN3-264ENST00000637985 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP20.04■□□□□ 0.8
CLN3-264ENST00000637985 PLXNA1Q9UIW2 1896 aa20.04■□□□□ 0.8
CLN3-264ENST00000637985 FAAP100Q0VG06 881 aa20.03■□□□□ 0.8
CLN3-264ENST00000637985 CCDC85BQ15834 202 aaPredicted RBP20.03■□□□□ 0.8
CLN3-264ENST00000637985 TATDN1Q6P1N9 297 aa20.03■□□□□ 0.8
CLN3-264ENST00000637985 ANKRD33Q7Z3H0 272 aa20.03■□□□□ 0.8
CLN3-264ENST00000637985 TOX2Q96NM4 488 aa20.03■□□□□ 0.8
CLN3-264ENST00000637985 NECAB3Q96P71 396 aaPredicted RBP20.03■□□□□ 0.8
CLN3-264ENST00000637985 BUD13Q9BRD0 619 aaKnown RBP eCLIP20.03■□□□□ 0.8
CLN3-264ENST00000637985 API5Q9BZZ5 524 aaKnown RBP20.03■□□□□ 0.8
CLN3-264ENST00000637985 NOB1Q9ULX3 412 aaKnown RBP20.03■□□□□ 0.8
CLN3-264ENST00000637985 TCF20Q9UGU0 1960 aaKnown RBP20.03■□□□□ 0.8
CLN3-264ENST00000637985 REV3LO60673 3130 aa20.02■□□□□ 0.8
CLN3-264ENST00000637985 HLA-DOAP06340 250 aa20.02■□□□□ 0.8
CLN3-264ENST00000637985 BMP1P13497 986 aa20.02■□□□□ 0.8
CLN3-264ENST00000637985 RASIP1Q5U651 963 aa20.02■□□□□ 0.8
CLN3-264ENST00000637985 NAA16Q6N069 864 aaPredicted RBP20.02■□□□□ 0.8
CLN3-264ENST00000637985 ATF7IPQ6VMQ6 1270 aa20.02■□□□□ 0.8
CLN3-264ENST00000637985 SLC44A5Q8NCS7 719 aa20.02■□□□□ 0.8
CLN3-264ENST00000637985 SHCBP1Q8NEM2 672 aa20.02■□□□□ 0.8
CLN3-264ENST00000637985 ACER1Q8TDN7 264 aa20.02■□□□□ 0.8
CLN3-264ENST00000637985 NEUROD6Q96NK8 337 aa20.02■□□□□ 0.8
CLN3-264ENST00000637985 RPAP3Q9H6T3 665 aaPredicted RBP20.02■□□□□ 0.8
CLN3-264ENST00000637985 XPNPEP3Q9NQH7 507 aa20.02■□□□□ 0.8
CLN3-264ENST00000637985 SLC5A4Q9NY91 659 aa20.02■□□□□ 0.8
CLN3-264ENST00000637985 SAP30BPQ9UHR5 308 aaKnown RBP20.02■□□□□ 0.8
CLN3-264ENST00000637985 CHD7Q9P2D1 2997 aa20.02■□□□□ 0.8
CLN3-264ENST00000637985 PIEZO1Q92508 2521 aa20.01■□□□□ 0.79
CLN3-264ENST00000637985 A0A1W2PQ45 241 aaPredicted RBP20.01■□□□□ 0.79
CLN3-264ENST00000637985 A0A1W2PQY0 241 aa20.01■□□□□ 0.79
CLN3-264ENST00000637985 GRXCR1A8MXD5 290 aa20.01■□□□□ 0.79
CLN3-264ENST00000637985 TIMP1P01033 207 aa20.01■□□□□ 0.79
CLN3-264ENST00000637985 ERCC3P19447 782 aa20.01■□□□□ 0.79
CLN3-264ENST00000637985 MCAMP43121 646 aa20.01■□□□□ 0.79
CLN3-264ENST00000637985 C16orf59Q7L2K0 433 aa20.01■□□□□ 0.79
CLN3-264ENST00000637985 ADGRA1Q86SQ6 560 aa20.01■□□□□ 0.79
CLN3-264ENST00000637985 RNF180Q86T96 592 aa20.01■□□□□ 0.79
CLN3-264ENST00000637985 RARBP10826 455 aa20■□□□□ 0.79
CLN3-264ENST00000637985 RARSP54136 660 aaKnown RBP20■□□□□ 0.79
CLN3-264ENST00000637985 RAB3GAP1Q15042 981 aa20■□□□□ 0.79
CLN3-264ENST00000637985 GORABQ5T7V8 394 aa20■□□□□ 0.79
CLN3-264ENST00000637985 CCDC129Q6ZRS4 1044 aa20■□□□□ 0.79
CLN3-264ENST00000637985 ABRAQ8N0Z2 381 aa20■□□□□ 0.79
CLN3-264ENST00000637985 MAML3Q96JK9 1138 aa20■□□□□ 0.79
CLN3-264ENST00000637985 SPATC1LQ9H0A9 340 aa20■□□□□ 0.79
CLN3-264ENST00000637985 CXXC1Q9P0U4 656 aaPredicted RBP20■□□□□ 0.79
CLN3-264ENST00000637985 NRBP1Q9UHY1 535 aa20■□□□□ 0.79
CLN3-264ENST00000637985 HDAC5Q9UQL6 1122 aa20■□□□□ 0.79
CLN3-264ENST00000637985 PGK1P00558 417 aa19.99■□□□□ 0.79
CLN3-264ENST00000637985 COG2Q14746 738 aa19.99■□□□□ 0.79
CLN3-264ENST00000637985 TMEM240Q5SV17 173 aa19.99■□□□□ 0.79
CLN3-264ENST00000637985 DIEXFQ68CQ4 756 aaKnown RBP19.99■□□□□ 0.79
CLN3-264ENST00000637985 MFSD5Q6N075 450 aa19.99■□□□□ 0.79
CLN3-264ENST00000637985 ARHGAP45Q92619 1136 aa19.99■□□□□ 0.79
CLN3-264ENST00000637985 LRFN3Q9BTN0 628 aa19.99■□□□□ 0.79
CLN3-264ENST00000637985 HOXC10Q9NYD6 342 aa19.99■□□□□ 0.79
CLN3-264ENST00000637985 TBX21Q9UL17 535 aa19.99■□□□□ 0.79
CLN3-264ENST00000637985 HCN4Q9Y3Q4 1203 aa19.99■□□□□ 0.79
CLN3-264ENST00000637985 DCDC2CA8MYV0 355 aa19.98■□□□□ 0.79
CLN3-264ENST00000637985 IGFBP4P22692 258 aa19.98■□□□□ 0.79
CLN3-264ENST00000637985 CCDC174Q6PII3 467 aa19.97■□□□□ 0.79
CLN3-264ENST00000637985 MROH8Q9H579 483 aa19.97■□□□□ 0.79
CLN3-264ENST00000637985 ROBO3Q96MS0 1386 aa19.96■□□□□ 0.79
CLN3-264ENST00000637985 A0A0G2JMZ2 1700 aa19.96■□□□□ 0.79
CLN3-264ENST00000637985 UQCRFS1P1P0C7P4 283 aa19.96■□□□□ 0.79
CLN3-264ENST00000637985 PPIGQ13427 754 aaKnown RBP eCLIP19.96■□□□□ 0.796e-7■■□□□ 12.5
CLN3-264ENST00000637985 ABCB5Q2M3G0 1257 aa19.96■□□□□ 0.79
CLN3-264ENST00000637985 CERKLQ49MI3 558 aaPredicted RBP19.96■□□□□ 0.79
CLN3-264ENST00000637985 MIER1Q8N108 512 aa19.96■□□□□ 0.79
CLN3-264ENST00000637985 TSEN34Q9BSV6 310 aaKnown RBP19.96■□□□□ 0.79
CLN3-264ENST00000637985 EHD4Q9H223 541 aa19.96■□□□□ 0.79
CLN3-264ENST00000637985 TSPYL2Q9H2G4 693 aaPredicted RBP19.96■□□□□ 0.79
CLN3-264ENST00000637985 SERPINB13Q9UIV8 391 aa19.96■□□□□ 0.79
CLN3-264ENST00000637985 MYH1P12882 1939 aa19.96■□□□□ 0.79
CLN3-264ENST00000637985 ZNFX1Q9P2E3 1918 aaKnown RBP19.96■□□□□ 0.79
CLN3-264ENST00000637985 ADAMTS4O75173 837 aa19.95■□□□□ 0.78
CLN3-264ENST00000637985 GUCY1A2P33402 732 aa19.95■□□□□ 0.78
CLN3-264ENST00000637985 RAB30Q15771 203 aa19.95■□□□□ 0.78
CLN3-264ENST00000637985 EPHX3Q9H6B9 360 aa19.95■□□□□ 0.78
CLN3-264ENST00000637985 STARD7Q9NQZ5 370 aa19.95■□□□□ 0.78
CLN3-264ENST00000637985 MSRAQ9UJ68 235 aa19.95■□□□□ 0.78
CLN3-264ENST00000637985 SRGAP3O43295 1099 aa19.94■□□□□ 0.78
CLN3-264ENST00000637985 ACLYP53396 1101 aa19.94■□□□□ 0.78
CLN3-264ENST00000637985 MB21D1Q8N884 522 aa19.94■□□□□ 0.78
CLN3-264ENST00000637985 SNRKQ9NRH2 765 aa19.94■□□□□ 0.78
CLN3-264ENST00000637985 IPO8O15397 1037 aaKnown RBP19.93■□□□□ 0.78
CLN3-264ENST00000637985 IGSF3O75054 1194 aa19.93■□□□□ 0.78
CLN3-264ENST00000637985 FCER1AP12319 257 aa19.93■□□□□ 0.78
CLN3-264ENST00000637985 CSF2RAP15509 400 aa19.93■□□□□ 0.78
CLN3-264ENST00000637985 TAL1P17542 331 aaPredicted RBP19.93■□□□□ 0.78
CLN3-264ENST00000637985 DYNLL1P63167 89 aaKnown RBP19.93■□□□□ 0.78
CLN3-264ENST00000637985 TFF2Q03403 129 aa19.93■□□□□ 0.78
CLN3-264ENST00000637985 AAK1Q2M2I8 961 aa19.93■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms