RNA–Protein interactions for RNA: ENST00000637968.1

SCN1A-216, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,614 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-216ENST00000637968 NCCRP1Q6ZVX7 275 aaPredicted RBP6.35□□□□□ -1.39
SCN1A-216ENST00000637968 SESTD1Q86VW0 696 aa6.35□□□□□ -1.39
SCN1A-216ENST00000637968 KIFAP3Q92845 792 aa6.35□□□□□ -1.39
SCN1A-216ENST00000637968 ACSBG1Q96GR2 724 aa6.35□□□□□ -1.39
SCN1A-216ENST00000637968 SPATA17Q96L03 361 aa6.35□□□□□ -1.39
SCN1A-216ENST00000637968 CATSPER2Q96P56 530 aa6.35□□□□□ -1.39
SCN1A-216ENST00000637968 NDEL1Q9GZM8 345 aa6.35□□□□□ -1.39
SCN1A-216ENST00000637968 PARVBQ9HBI1 364 aa6.35□□□□□ -1.39
SCN1A-216ENST00000637968 PIK3C2GO75747 1445 aa6.35□□□□□ -1.39
SCN1A-216ENST00000637968 VWA3AA6NCI4 1184 aa6.35□□□□□ -1.39
SCN1A-216ENST00000637968 GCOM1H8Y6P7 765 aaPredicted RBP6.35□□□□□ -1.39
SCN1A-216ENST00000637968 SYF2O95926 243 aaKnown RBP6.35□□□□□ -1.39
SCN1A-216ENST00000637968 CHGBP05060 677 aa6.35□□□□□ -1.39
SCN1A-216ENST00000637968 MSL3P1P0C860 447 aa6.35□□□□□ -1.39
SCN1A-216ENST00000637968 MYZAPP0CAP1 466 aa6.35□□□□□ -1.39
SCN1A-216ENST00000637968 SERPINB4P48594 390 aa6.35□□□□□ -1.39
SCN1A-216ENST00000637968 HDLBPQ00341 1268 aaKnown RBP6.35□□□□□ -1.39
SCN1A-216ENST00000637968 MTX1Q13505 466 aa6.35□□□□□ -1.39
SCN1A-216ENST00000637968 PTGISQ16647 500 aa6.35□□□□□ -1.39
SCN1A-216ENST00000637968 LARP7Q4G0J3 582 aaKnown RBP eCLIP6.35□□□□□ -1.39
SCN1A-216ENST00000637968 ANKRD20A8PQ5CZ79 823 aa6.35□□□□□ -1.39
SCN1A-216ENST00000637968 OLFML2BQ68BL8 750 aa6.35□□□□□ -1.39
SCN1A-216ENST00000637968 TRIM65Q6PJ69 517 aa6.35□□□□□ -1.39
SCN1A-216ENST00000637968 CDC37L1Q7L3B6 337 aa6.35□□□□□ -1.39
SCN1A-216ENST00000637968 ZNF554Q86TJ5 538 aa6.35□□□□□ -1.39
SCN1A-216ENST00000637968 PDCD7Q8N8D1 485 aaKnown RBP6.35□□□□□ -1.39
SCN1A-216ENST00000637968 MYCBPAPQ8TBZ2 947 aa6.35□□□□□ -1.39
SCN1A-216ENST00000637968 MPP4Q96JB8 637 aa6.35□□□□□ -1.39
SCN1A-216ENST00000637968 NUP58Q9BVL2 599 aa6.35□□□□□ -1.39
SCN1A-216ENST00000637968 OSBPL10Q9BXB5 764 aa6.35□□□□□ -1.39
SCN1A-216ENST00000637968 CCDC87Q9NVE4 849 aa6.35□□□□□ -1.39
SCN1A-216ENST00000637968 CIDEBQ9UHD4 219 aa6.35□□□□□ -1.39
SCN1A-216ENST00000637968 BARX2Q9UMQ3 279 aaPredicted RBP6.35□□□□□ -1.39
SCN1A-216ENST00000637968 TMEM98Q9Y2Y6 226 aa6.35□□□□□ -1.39
SCN1A-216ENST00000637968 TTC21BQ7Z4L5 1316 aa6.35□□□□□ -1.39
SCN1A-216ENST00000637968 GIGYF1O75420 1035 aaPredicted RBP6.35□□□□□ -1.39
SCN1A-216ENST00000637968 LDHAP00338 332 aaKnown RBP6.35□□□□□ -1.39
SCN1A-216ENST00000637968 CLCN2P51788 898 aa6.35□□□□□ -1.39
SCN1A-216ENST00000637968 USP14P54578 494 aa6.35□□□□□ -1.39
SCN1A-216ENST00000637968 EPHB4P54760 987 aa6.35□□□□□ -1.39
SCN1A-216ENST00000637968 ELF3P78545 371 aaPredicted RBP6.35□□□□□ -1.39
SCN1A-216ENST00000637968 SOGA3Q5TF21 947 aa6.35□□□□□ -1.39
SCN1A-216ENST00000637968 PI16Q6UXB8 463 aa6.35□□□□□ -1.39
SCN1A-216ENST00000637968 LONP2Q86WA8 852 aa6.35□□□□□ -1.39
SCN1A-216ENST00000637968 TRIM50Q86XT4 487 aa6.35□□□□□ -1.39
SCN1A-216ENST00000637968 SLC35F6Q8N357 371 aa6.35□□□□□ -1.39
SCN1A-216ENST00000637968 NME8Q8N427 588 aa6.35□□□□□ -1.39
SCN1A-216ENST00000637968 MRPS27Q92552 414 aaKnown RBP6.35□□□□□ -1.39
SCN1A-216ENST00000637968 IQCDQ96DY2 449 aa6.35□□□□□ -1.39
SCN1A-216ENST00000637968 CYFIP2Q96F07 1278 aa6.35□□□□□ -1.39
SCN1A-216ENST00000637968 AGAP3Q96P47 875 aa6.35□□□□□ -1.39
SCN1A-216ENST00000637968 OLFM3Q96PB7 478 aa6.35□□□□□ -1.39
SCN1A-216ENST00000637968 PREBQ9HCU5 417 aa6.35□□□□□ -1.39
SCN1A-216ENST00000637968 WDR35Q9P2L0 1181 aa6.35□□□□□ -1.39
SCN1A-216ENST00000637968 MTUS1Q9ULD2 1270 aa6.35□□□□□ -1.39
SCN1A-216ENST00000637968 CUL7Q14999 1698 aa6.34□□□□□ -1.39
SCN1A-216ENST00000637968 DENND4BO75064 1496 aaPredicted RBP6.34□□□□□ -1.39
SCN1A-216ENST00000637968 IQCA1LA6NCM1 817 aa6.34□□□□□ -1.39
SCN1A-216ENST00000637968 SH3BP5O60239 455 aa6.34□□□□□ -1.39
SCN1A-216ENST00000637968 FOSBP53539 338 aa6.34□□□□□ -1.39
SCN1A-216ENST00000637968 COG7P83436 770 aa6.34□□□□□ -1.39
SCN1A-216ENST00000637968 GUCY1B3Q02153 619 aa6.34□□□□□ -1.39
SCN1A-216ENST00000637968 MORC4Q8TE76 937 aa6.34□□□□□ -1.39
SCN1A-216ENST00000637968 RRP36Q96EU6 259 aaKnown RBP6.34□□□□□ -1.39
SCN1A-216ENST00000637968 EHD4Q9H223 541 aa6.34□□□□□ -1.39
SCN1A-216ENST00000637968 PCDH18Q9HCL0 1135 aa6.34□□□□□ -1.39
SCN1A-216ENST00000637968 PFDN4Q9NQP4 134 aa6.34□□□□□ -1.39
SCN1A-216ENST00000637968 L3MBTL1Q9Y468 752 aa6.34□□□□□ -1.39
SCN1A-216ENST00000637968 CTDP1Q9Y5B0 961 aaPredicted RBP6.34□□□□□ -1.39
SCN1A-216ENST00000637968 SYNRGQ9UMZ2 1314 aa6.34□□□□□ -1.39
SCN1A-216ENST00000637968 ABCC11Q96J66 1382 aa6.34□□□□□ -1.39
SCN1A-216ENST00000637968 GHRP10912 638 aa6.34□□□□□ -1.39
SCN1A-216ENST00000637968 VDRP11473 427 aa6.34□□□□□ -1.39
SCN1A-216ENST00000637968 MDH1P40925 334 aaKnown RBP6.34□□□□□ -1.39
SCN1A-216ENST00000637968 MTTPP55157 894 aa6.34□□□□□ -1.39
SCN1A-216ENST00000637968 GUCY1A3Q02108 690 aa6.34□□□□□ -1.39
SCN1A-216ENST00000637968 HLTFQ14527 1009 aaKnown RBP eCLIP6.34□□□□□ -1.396e-7■■■■□ 22.5
SCN1A-216ENST00000637968 FAM173BQ6P4H8 233 aa6.34□□□□□ -1.39
SCN1A-216ENST00000637968 KLC3Q6P597 504 aa6.34□□□□□ -1.39
SCN1A-216ENST00000637968 COG3Q96JB2 828 aa6.34□□□□□ -1.39
SCN1A-216ENST00000637968 GPCPD1Q9NPB8 672 aa6.34□□□□□ -1.39
SCN1A-216ENST00000637968 STIM2Q9P246 746 aa6.34□□□□□ -1.39
SCN1A-216ENST00000637968 SAR1BQ9Y6B6 198 aa6.34□□□□□ -1.39
SCN1A-216ENST00000637968 PTPRKQ15262 1439 aa6.34□□□□□ -1.39
SCN1A-216ENST00000637968 SMIM23A6NLE4 172 aa6.34□□□□□ -1.39
SCN1A-216ENST00000637968 GOLGA8AA7E2F4 631 aa6.34□□□□□ -1.39
SCN1A-216ENST00000637968 FAM163BP0C2L3 166 aa6.34□□□□□ -1.39
SCN1A-216ENST00000637968 S100A1P23297 94 aa6.34□□□□□ -1.39
SCN1A-216ENST00000637968 ZNF131P52739 623 aa6.34□□□□□ -1.39
SCN1A-216ENST00000637968 SKOR1P84550 965 aa6.34□□□□□ -1.39
SCN1A-216ENST00000637968 EPSTI1Q96J88 318 aa6.34□□□□□ -1.39
SCN1A-216ENST00000637968 MAML3Q96JK9 1138 aa6.34□□□□□ -1.39
SCN1A-216ENST00000637968 CTAGE1Q96RT6 745 aa6.34□□□□□ -1.39
SCN1A-216ENST00000637968 FAM192AQ9GZU8 254 aa6.34□□□□□ -1.39
SCN1A-216ENST00000637968 EBF2Q9HAK2 575 aa6.34□□□□□ -1.39
SCN1A-216ENST00000637968 EIF4ENIF1Q9NRA8 985 aaKnown RBP6.34□□□□□ -1.39
SCN1A-216ENST00000637968 RMND1Q9NWS8 449 aa6.34□□□□□ -1.39
SCN1A-216ENST00000637968 PDP2Q9P2J9 529 aa6.34□□□□□ -1.39
SCN1A-216ENST00000637968 CROTQ9UKG9 612 aa6.34□□□□□ -1.39
SCN1A-216ENST00000637968 STIP1P31948 543 aaKnown RBP6.34□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 11.3 ms