RNA–Protein interactions for RNA: ENST00000637686.1

CLN3-261, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 533 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-261ENST00000637686 NBPF3Q9H094 633 aa11.67□□□□□ -0.54
CLN3-261ENST00000637686 RPAP3Q9H6T3 665 aaPredicted RBP11.67□□□□□ -0.54
CLN3-261ENST00000637686 SH2D4AQ9H788 454 aa11.67□□□□□ -0.54
CLN3-261ENST00000637686 VCPKMTQ9H867 229 aa11.67□□□□□ -0.54
CLN3-261ENST00000637686 TOMM22Q9NS69 142 aa11.67□□□□□ -0.54
CLN3-261ENST00000637686 NYAP2Q9P242 653 aa11.67□□□□□ -0.54
CLN3-261ENST00000637686 CTNNA3Q9UI47 895 aa11.67□□□□□ -0.54
CLN3-261ENST00000637686 TRIM17Q9Y577 477 aa11.67□□□□□ -0.54
CLN3-261ENST00000637686 GREB1LQ9C091 1923 aaPredicted RBP11.66□□□□□ -0.54
CLN3-261ENST00000637686 ORC4O43929 436 aa11.66□□□□□ -0.54
CLN3-261ENST00000637686 RAD21O60216 631 aa11.66□□□□□ -0.54
CLN3-261ENST00000637686 RANBP6O60518 1105 aaKnown RBP11.66□□□□□ -0.54
CLN3-261ENST00000637686 HERVK_113P62684 666 aa11.66□□□□□ -0.54
CLN3-261ENST00000637686 KIF22Q14807 665 aa11.66□□□□□ -0.54
CLN3-261ENST00000637686 AKNAD1Q5T1N1 836 aa11.66□□□□□ -0.54
CLN3-261ENST00000637686 CATSPERGQ6ZRH7 1159 aa11.66□□□□□ -0.54
CLN3-261ENST00000637686 TBC1D10CQ8IV04 446 aa11.66□□□□□ -0.54
CLN3-261ENST00000637686 SPICE1Q8N0Z3 855 aa11.66□□□□□ -0.54
CLN3-261ENST00000637686 IL27Q8NEV9 243 aa11.66□□□□□ -0.54
CLN3-261ENST00000637686 STAG1Q8WVM7 1258 aa11.66□□□□□ -0.54
CLN3-261ENST00000637686 EFCC1Q9HA90 598 aa11.66□□□□□ -0.54
CLN3-261ENST00000637686 MTMR4Q9NYA4 1195 aa11.66□□□□□ -0.54
CLN3-261ENST00000637686 CLIP2Q9UDT6 1046 aa11.66□□□□□ -0.54
CLN3-261ENST00000637686 PLIN4Q96Q06 1357 aa11.66□□□□□ -0.54
CLN3-261ENST00000637686 NMT2O60551 498 aa11.65□□□□□ -0.54
CLN3-261ENST00000637686 PEX10O60683 326 aa11.65□□□□□ -0.54
CLN3-261ENST00000637686 TTLL1O95922 423 aa11.65□□□□□ -0.54
CLN3-261ENST00000637686 CTGFP29279 349 aa11.65□□□□□ -0.54
CLN3-261ENST00000637686 GCLCP48506 637 aaPredicted RBP11.65□□□□□ -0.54
CLN3-261ENST00000637686 PKN2Q16513 984 aaKnown RBP11.65□□□□□ -0.54
CLN3-261ENST00000637686 IMMTQ16891 758 aaKnown RBP11.65□□□□□ -0.54
CLN3-261ENST00000637686 MFSD6Q6ZSS7 791 aa11.65□□□□□ -0.54
CLN3-261ENST00000637686 OTOP1Q7RTM1 612 aa11.65□□□□□ -0.54
CLN3-261ENST00000637686 LRRC47Q8N1G4 583 aaKnown RBP11.65□□□□□ -0.54
CLN3-261ENST00000637686 NKX2-3Q8TAU0 364 aa11.65□□□□□ -0.54
CLN3-261ENST00000637686 LPAR1Q92633 364 aa11.65□□□□□ -0.54
CLN3-261ENST00000637686 RNF41Q9H4P4 317 aaPredicted RBP11.65□□□□□ -0.54
CLN3-261ENST00000637686 GOPCQ9HD26 462 aa11.65□□□□□ -0.54
CLN3-261ENST00000637686 IL17RBQ9NRM6 502 aa11.65□□□□□ -0.54
CLN3-261ENST00000637686 NEDD4P46934 1319 aa11.64□□□□□ -0.55
CLN3-261ENST00000637686 F5H6K3 240 aa11.64□□□□□ -0.55
CLN3-261ENST00000637686 FMNL1O95466 1100 aaPredicted RBP11.64□□□□□ -0.55
CLN3-261ENST00000637686 PCP11498 1178 aaKnown RBP11.64□□□□□ -0.55
CLN3-261ENST00000637686 PSMC4P43686 418 aa11.64□□□□□ -0.55
CLN3-261ENST00000637686 KLRC3Q07444 240 aa11.64□□□□□ -0.55
CLN3-261ENST00000637686 ARHGEF6Q15052 776 aa11.64□□□□□ -0.55
CLN3-261ENST00000637686 FAM110CQ1W6H9 321 aa11.64□□□□□ -0.55
CLN3-261ENST00000637686 POTEEQ6S8J3 1075 aa11.64□□□□□ -0.55
CLN3-261ENST00000637686 KIAA1211Q6ZU35 1233 aa11.64□□□□□ -0.55
CLN3-261ENST00000637686 MKL1Q969V6 931 aa11.64□□□□□ -0.55
CLN3-261ENST00000637686 IL17RAQ96F46 866 aa11.64□□□□□ -0.55
CLN3-261ENST00000637686 TANGO6Q9C0B7 1094 aa11.64□□□□□ -0.55
CLN3-261ENST00000637686 TXNRD2Q9NNW7 524 aa11.64□□□□□ -0.55
CLN3-261ENST00000637686 RBPJLQ9UBG7 517 aa11.64□□□□□ -0.55
CLN3-261ENST00000637686 U3KPZ7 1027 aaPredicted RBP11.64□□□□□ -0.55
CLN3-261ENST00000637686 ZSWIM8A7E2V4 1837 aa11.63□□□□□ -0.55
CLN3-261ENST00000637686 SPDYE16A6NNV3 312 aaPredicted RBP11.63□□□□□ -0.55
CLN3-261ENST00000637686 WDR46O15213 610 aaKnown RBP11.63□□□□□ -0.55
CLN3-261ENST00000637686 NDUFB10O96000 172 aa11.63□□□□□ -0.55
CLN3-261ENST00000637686 RBM25P49756 843 aaKnown RBP11.63□□□□□ -0.55
CLN3-261ENST00000637686 FCGRTP55899 365 aa11.63□□□□□ -0.55
CLN3-261ENST00000637686 COG2Q14746 738 aa11.63□□□□□ -0.55
CLN3-261ENST00000637686 Q3C1V9 767 aa11.63□□□□□ -0.55
CLN3-261ENST00000637686 FAM83BQ5T0W9 1011 aa11.63□□□□□ -0.55
CLN3-261ENST00000637686 SAMD1Q6SPF0 538 aaPredicted RBP11.63□□□□□ -0.55
CLN3-261ENST00000637686 GTF3C2Q8WUA4 911 aaPredicted RBP11.63□□□□□ -0.55
CLN3-261ENST00000637686 MAP4K1Q92918 833 aa11.63□□□□□ -0.55
CLN3-261ENST00000637686 ABHD8Q96I13 439 aa11.63□□□□□ -0.55
CLN3-261ENST00000637686 TRIM47Q96LD4 638 aa11.63□□□□□ -0.55
CLN3-261ENST00000637686 NUP88Q99567 741 aaPredicted RBP11.63□□□□□ -0.55
CLN3-261ENST00000637686 PAGR1Q9BTK6 254 aa11.63□□□□□ -0.55
CLN3-261ENST00000637686 USP26Q9BXU7 913 aa11.63□□□□□ -0.55
CLN3-261ENST00000637686 HOXC10Q9NYD6 342 aa11.63□□□□□ -0.55
CLN3-261ENST00000637686 MORF4L1Q9UBU8 362 aa11.63□□□□□ -0.55
CLN3-261ENST00000637686 STX8Q9UNK0 236 aa11.63□□□□□ -0.55
CLN3-261ENST00000637686 MYH4Q9Y623 1939 aa11.62□□□□□ -0.55
CLN3-261ENST00000637686 B4E1Z4 1266 aa11.62□□□□□ -0.55
CLN3-261ENST00000637686 CNMDO75829 334 aa11.62□□□□□ -0.55
CLN3-261ENST00000637686 FLOT1O75955 427 aa11.62□□□□□ -0.55
CLN3-261ENST00000637686 SEC24BO95487 1268 aa11.62□□□□□ -0.55
CLN3-261ENST00000637686 CYP21A2P08686 494 aa11.62□□□□□ -0.55
CLN3-261ENST00000637686 ANAPC15P60006 121 aa11.62□□□□□ -0.55
CLN3-261ENST00000637686 PPP4R3BQ5MIZ7 849 aa11.62□□□□□ -0.55
CLN3-261ENST00000637686 FBXO46Q6PJ61 603 aaPredicted RBP11.62□□□□□ -0.55
CLN3-261ENST00000637686 GMCL1P1Q8NEA9 526 aa11.62□□□□□ -0.55
CLN3-261ENST00000637686 GPRC5AQ8NFJ5 357 aa11.62□□□□□ -0.55
CLN3-261ENST00000637686 ESR2Q92731 530 aa11.62□□□□□ -0.55
CLN3-261ENST00000637686 CHMP4CQ96CF2 233 aa11.62□□□□□ -0.55
CLN3-261ENST00000637686 TBC1D32Q96NH3 1257 aa11.62□□□□□ -0.55
CLN3-261ENST00000637686 LSG1Q9H089 658 aaKnown RBP11.62□□□□□ -0.55
CLN3-261ENST00000637686 TCP11L1Q9NUJ3 509 aa11.62□□□□□ -0.55
CLN3-261ENST00000637686 PTPN22Q9Y2R2 807 aa11.62□□□□□ -0.55
CLN3-261ENST00000637686 RABGAP1Q9Y3P9 1069 aa11.62□□□□□ -0.55
CLN3-261ENST00000637686 RBM8AQ9Y5S9 174 aaKnown RBP11.62□□□□□ -0.55
CLN3-261ENST00000637686 LAMA4Q16363 1823 aa11.62□□□□□ -0.55
CLN3-261ENST00000637686 KDM4AO75164 1064 aa11.61□□□□□ -0.55
CLN3-261ENST00000637686 GNRH1P01148 92 aa11.61□□□□□ -0.55
CLN3-261ENST00000637686 MCCP23508 829 aa11.61□□□□□ -0.55
CLN3-261ENST00000637686 HOXD10P28358 340 aa11.61□□□□□ -0.55
CLN3-261ENST00000637686 DSG3P32926 999 aa11.61□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms