RNA–Protein interactions for RNA: ENST00000637100.1

CLN3-255, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,284 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-255ENST00000637100 ZNF532Q9HCE3 1301 aa19.92■□□□□ 0.78
CLN3-255ENST00000637100 CUL9Q8IWT3 2517 aa19.91■□□□□ 0.78
CLN3-255ENST00000637100 POTEB2H3BUK9 544 aa19.91■□□□□ 0.78
CLN3-255ENST00000637100 CYP2C19P33261 490 aa19.91■□□□□ 0.78
CLN3-255ENST00000637100 FAM109BQ6ICB4 259 aaPredicted RBP19.91■□□□□ 0.78
CLN3-255ENST00000637100 TMEM179Q6ZVK1 233 aa19.91■□□□□ 0.78
CLN3-255ENST00000637100 SIRT2Q8IXJ6 389 aa19.91■□□□□ 0.78
CLN3-255ENST00000637100 MB21D1Q8N884 522 aa19.91■□□□□ 0.78
CLN3-255ENST00000637100 KIF1BPQ96EK5 621 aa19.91■□□□□ 0.78
CLN3-255ENST00000637100 SPATC1LQ9H0A9 340 aa19.91■□□□□ 0.78
CLN3-255ENST00000637100 IL1RAPL2Q9NP60 686 aa19.91■□□□□ 0.78
CLN3-255ENST00000637100 MCM9Q9NXL9 1143 aa19.91■□□□□ 0.78
CLN3-255ENST00000637100 SWAP70Q9UH65 585 aa19.91■□□□□ 0.78
CLN3-255ENST00000637100 TMX2Q9Y320 296 aa19.91■□□□□ 0.78
CLN3-255ENST00000637100 NAV1Q8NEY1 1877 aa19.9■□□□□ 0.78
CLN3-255ENST00000637100 DSG3P32926 999 aa19.9■□□□□ 0.78
CLN3-255ENST00000637100 HNRNPUQ00839 825 aaKnown RBP eCLIP19.9■□□□□ 0.78
CLN3-255ENST00000637100 CLASRPQ8N2M8 674 aaKnown RBP19.9■□□□□ 0.78
CLN3-255ENST00000637100 LCORLQ8N3X6 602 aa19.9■□□□□ 0.78
CLN3-255ENST00000637100 PANK1Q8TE04 598 aa19.9■□□□□ 0.78
CLN3-255ENST00000637100 CWC22Q9HCG8 908 aaKnown RBP19.9■□□□□ 0.78
CLN3-255ENST00000637100 ADAMTS5Q9UNA0 930 aa19.9■□□□□ 0.78
CLN3-255ENST00000637100 COBLO75128 1261 aa19.89■□□□□ 0.77
CLN3-255ENST00000637100 ADORA2AP29274 412 aa19.89■□□□□ 0.77
CLN3-255ENST00000637100 Q7L0L9 218 aa19.89■□□□□ 0.77
CLN3-255ENST00000637100 SDR42E1Q8WUS8 393 aa19.89■□□□□ 0.77
CLN3-255ENST00000637100 SENP6Q9GZR1 1112 aaPredicted RBP19.89■□□□□ 0.77
CLN3-255ENST00000637100 MROH8Q9H579 483 aa19.89■□□□□ 0.77
CLN3-255ENST00000637100 ATP8A2Q9NTI2 1148 aa19.89■□□□□ 0.77
CLN3-255ENST00000637100 ZBTB40Q9NUA8 1239 aa19.89■□□□□ 0.77
CLN3-255ENST00000637100 ERCC3P19447 782 aa19.88■□□□□ 0.77
CLN3-255ENST00000637100 ADD2P35612 726 aa19.88■□□□□ 0.77
CLN3-255ENST00000637100 SNX17Q15036 470 aa19.88■□□□□ 0.77
CLN3-255ENST00000637100 CCDC17Q96LX7 622 aa19.88■□□□□ 0.77
CLN3-255ENST00000637100 GOLIM4O00461 696 aa19.87■□□□□ 0.77
CLN3-255ENST00000637100 SEPT4O43236 478 aa19.87■□□□□ 0.77
CLN3-255ENST00000637100 RAB11FIP3O75154 756 aa19.87■□□□□ 0.77
CLN3-255ENST00000637100 CYP2D6P10635 497 aa19.87■□□□□ 0.77
CLN3-255ENST00000637100 MS4A1P11836 297 aa19.87■□□□□ 0.77
CLN3-255ENST00000637100 ATP5JP18859 108 aa19.87■□□□□ 0.77
CLN3-255ENST00000637100 C12orf60Q5U649 245 aa19.87■□□□□ 0.77
CLN3-255ENST00000637100 WDR78Q5VTH9 848 aa19.87■□□□□ 0.77
CLN3-255ENST00000637100 C1orf53Q5VUE5 145 aa19.87■□□□□ 0.77
CLN3-255ENST00000637100 SLC44A5Q8NCS7 719 aa19.87■□□□□ 0.77
CLN3-255ENST00000637100 ARRDC4Q8NCT1 418 aa19.87■□□□□ 0.77
CLN3-255ENST00000637100 VCPKMTQ9H867 229 aa19.87■□□□□ 0.77
CLN3-255ENST00000637100 ZBED9Q6R2W3 1325 aa19.86■□□□□ 0.77
CLN3-255ENST00000637100 MDM2Q00987 491 aaPredicted RBP19.86■□□□□ 0.77
CLN3-255ENST00000637100 DPP9Q86TI2 863 aa19.86■□□□□ 0.77
CLN3-255ENST00000637100 DYNLL2Q96FJ2 89 aa19.86■□□□□ 0.77
CLN3-255ENST00000637100 NRBP1Q9UHY1 535 aa19.86■□□□□ 0.77
CLN3-255ENST00000637100 AKR1B1P15121 316 aa19.85■□□□□ 0.77
CLN3-255ENST00000637100 UBE3CQ15386 1083 aa19.85■□□□□ 0.77
CLN3-255ENST00000637100 SLC39A5Q6ZMH5 540 aa19.85■□□□□ 0.77
CLN3-255ENST00000637100 ARMT1Q9H993 441 aa19.85■□□□□ 0.77
CLN3-255ENST00000637100 PAG1Q9NWQ8 432 aa19.85■□□□□ 0.77
CLN3-255ENST00000637100 PARP14Q460N5 1801 aa19.85■□□□□ 0.77
CLN3-255ENST00000637100 MPHOSPH10O00566 681 aaKnown RBP19.84■□□□□ 0.77
CLN3-255ENST00000637100 WDR46O15213 610 aaKnown RBP19.84■□□□□ 0.77
CLN3-255ENST00000637100 PRKAB2O43741 272 aa19.84■□□□□ 0.77
CLN3-255ENST00000637100 HMMRO75330 724 aa19.84■□□□□ 0.77
CLN3-255ENST00000637100 IFIT2P09913 472 aaKnown RBP19.84■□□□□ 0.77
CLN3-255ENST00000637100 CNGA1P29973 690 aa19.84■□□□□ 0.77
CLN3-255ENST00000637100 RTP1P59025 263 aa19.84■□□□□ 0.77
CLN3-255ENST00000637100 C16orf86Q6ZW13 317 aa19.84■□□□□ 0.77
CLN3-255ENST00000637100 ATG4CQ96DT6 458 aa19.84■□□□□ 0.77
CLN3-255ENST00000637100 MAML3Q96JK9 1138 aa19.84■□□□□ 0.77
CLN3-255ENST00000637100 HAUS7Q99871 368 aa19.84■□□□□ 0.77
CLN3-255ENST00000637100 TANGO6Q9C0B7 1094 aa19.84■□□□□ 0.77
CLN3-255ENST00000637100 SH2D4AQ9H788 454 aa19.84■□□□□ 0.77
CLN3-255ENST00000637100 ARHGEF10LQ9HCE6 1279 aa19.84■□□□□ 0.77
CLN3-255ENST00000637100 SLC5A4Q9NY91 659 aa19.84■□□□□ 0.77
CLN3-255ENST00000637100 LTBP2Q14767 1821 aa19.83■□□□□ 0.77
CLN3-255ENST00000637100 SMIM22K7EJ46 135 aa19.83■□□□□ 0.77
CLN3-255ENST00000637100 SLC25A27O95847 323 aa19.83■□□□□ 0.77
CLN3-255ENST00000637100 CDK8P49336 464 aa19.83■□□□□ 0.77
CLN3-255ENST00000637100 ICA1Q05084 483 aa19.83■□□□□ 0.77
CLN3-255ENST00000637100 DNAJC2Q99543 621 aaKnown RBP19.83■□□□□ 0.77
CLN3-255ENST00000637100 DDX19BQ9UMR2 479 aa19.83■□□□□ 0.77
CLN3-255ENST00000637100 DIS3Q9Y2L1 958 aaKnown RBP19.83■□□□□ 0.77
CLN3-255ENST00000637100 LAMA2P24043 3122 aaKnown RBP19.82■□□□□ 0.76
CLN3-255ENST00000637100 MBD4O95243 580 aa19.82■□□□□ 0.76
CLN3-255ENST00000637100 TMEM132BQ14DG7 1078 aa19.82■□□□□ 0.76
CLN3-255ENST00000637100 SLFNL1Q499Z3 407 aa19.82■□□□□ 0.76
CLN3-255ENST00000637100 GJC2Q5T442 439 aaPredicted RBP19.82■□□□□ 0.76
CLN3-255ENST00000637100 RIOX2Q8IUF8 465 aa19.82■□□□□ 0.76
CLN3-255ENST00000637100 REPS2Q8NFH8 660 aa19.82■□□□□ 0.76
CLN3-255ENST00000637100 LBHD1Q9BQE6 289 aaPredicted RBP19.82■□□□□ 0.76
CLN3-255ENST00000637100 UNC80Q8N2C7 3258 aa19.82■□□□□ 0.76
CLN3-255ENST00000637100 ROBO3Q96MS0 1386 aa19.82■□□□□ 0.76
CLN3-255ENST00000637100 USP17L12C9JPN9 530 aa19.81■□□□□ 0.76
CLN3-255ENST00000637100 USP17L21D6R901 530 aa19.81■□□□□ 0.76
CLN3-255ENST00000637100 FLOT1O75955 427 aa19.81■□□□□ 0.76
CLN3-255ENST00000637100 ATN1P54259 1190 aaPredicted RBP19.81■□□□□ 0.76
CLN3-255ENST00000637100 LRRC41Q15345 812 aa19.81■□□□□ 0.76
CLN3-255ENST00000637100 CLEC10AQ8IUN9 316 aa19.81■□□□□ 0.76
CLN3-255ENST00000637100 MIER1Q8N108 512 aa19.81■□□□□ 0.76
CLN3-255ENST00000637100 GUCD1Q96NT3 240 aa19.81■□□□□ 0.76
CLN3-255ENST00000637100 GNL3Q9BVP2 549 aaKnown RBP eCLIP19.81■□□□□ 0.76
CLN3-255ENST00000637100 KANSL2Q9H9L4 492 aa19.81■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 140.4 ms