RNA–Protein interactions for RNA: ENST00000636964.1

CLN6-217, Transcript of CLN6, transmembrane ER protein, humanhuman

TSL 2

Gene CLN6, Length 3,335 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6-217ENST00000636964 GAKO14976 1311 aa13.21□□□□□ -0.29
CLN6-217ENST00000636964 NID2Q14112 1375 aa13.21□□□□□ -0.29
CLN6-217ENST00000636964 SLX4Q8IY92 1834 aa13.21□□□□□ -0.3
CLN6-217ENST00000636964 PLCG2P16885 1265 aa13.21□□□□□ -0.3
CLN6-217ENST00000636964 CDK8P49336 464 aa13.21□□□□□ -0.3
CLN6-217ENST00000636964 KIAA0825Q8IV33 1275 aa13.21□□□□□ -0.3
CLN6-217ENST00000636964 SRBD1Q8N5C6 995 aaKnown RBP13.21□□□□□ -0.3
CLN6-217ENST00000636964 CTCFLQ8NI51 663 aaPredicted RBP13.21□□□□□ -0.3
CLN6-217ENST00000636964 SHISA4Q96DD7 197 aa13.21□□□□□ -0.3
CLN6-217ENST00000636964 EYA3Q99504 573 aa13.21□□□□□ -0.3
CLN6-217ENST00000636964 KAT14Q9H8E8 782 aa13.21□□□□□ -0.3
CLN6-217ENST00000636964 MMP1P03956 469 aa13.2□□□□□ -0.3
CLN6-217ENST00000636964 RASA1P20936 1047 aa13.2□□□□□ -0.3
CLN6-217ENST00000636964 SLC20A2Q08357 652 aa13.2□□□□□ -0.3
CLN6-217ENST00000636964 FUT2Q10981 343 aa13.2□□□□□ -0.3
CLN6-217ENST00000636964 PKN1Q16512 942 aa13.2□□□□□ -0.3
CLN6-217ENST00000636964 ERCC4Q92889 916 aaPredicted RBP13.2□□□□□ -0.3
CLN6-217ENST00000636964 DDX19AQ9NUU7 478 aaKnown RBP13.2□□□□□ -0.3
CLN6-217ENST00000636964 POLR3EQ9NVU0 708 aa13.2□□□□□ -0.3
CLN6-217ENST00000636964 ECM29Q5VYK3 1845 aa13.2□□□□□ -0.3
CLN6-217ENST00000636964 LAMB1P07942 1786 aa13.2□□□□□ -0.3
CLN6-217ENST00000636964 C21orf2O43822 256 aa13.2□□□□□ -0.3
CLN6-217ENST00000636964 SLURP2P0DP57 97 aa13.2□□□□□ -0.3
CLN6-217ENST00000636964 VEGFAP15692 232 aaPredicted RBP13.2□□□□□ -0.3
CLN6-217ENST00000636964 RCAN1P53805 252 aa13.2□□□□□ -0.3
CLN6-217ENST00000636964 AOC3Q16853 763 aa13.2□□□□□ -0.3
CLN6-217ENST00000636964 STYK1Q6J9G0 422 aa13.2□□□□□ -0.3
CLN6-217ENST00000636964 CLSTN2Q9H4D0 955 aa13.2□□□□□ -0.3
CLN6-217ENST00000636964 DDX4Q9NQI0 724 aaKnown RBP13.2□□□□□ -0.3
CLN6-217ENST00000636964 USP40Q9NVE5 1235 aa13.2□□□□□ -0.3
CLN6-217ENST00000636964 SAFBQ15424 915 aaKnown RBP eCLIP13.19□□□□□ -0.3
CLN6-217ENST00000636964 CCDC73Q6ZRK6 1079 aa13.19□□□□□ -0.3
CLN6-217ENST00000636964 RASGRP2Q7LDG7 609 aa13.19□□□□□ -0.3
CLN6-217ENST00000636964 DDAH1O94760 285 aa13.19□□□□□ -0.3
CLN6-217ENST00000636964 CALM1P0DP23 149 aa13.19□□□□□ -0.3
CLN6-217ENST00000636964 CALM2P0DP24 149 aa13.19□□□□□ -0.3
CLN6-217ENST00000636964 CALM3P0DP25 149 aa13.19□□□□□ -0.3
CLN6-217ENST00000636964 SNW1Q13573 536 aaKnown RBP13.19□□□□□ -0.3
CLN6-217ENST00000636964 TMTC3Q6ZXV5 915 aa13.19□□□□□ -0.3
CLN6-217ENST00000636964 STAG2Q8N3U4 1231 aa13.19□□□□□ -0.3
CLN6-217ENST00000636964 PNMA1Q8ND90 353 aa13.19□□□□□ -0.3
CLN6-217ENST00000636964 RNF26Q9BY78 433 aaPredicted RBP13.19□□□□□ -0.3
CLN6-217ENST00000636964 CAPN2P17655 700 aa13.19□□□□□ -0.3
CLN6-217ENST00000636964 BAG6P46379 1132 aa13.19□□□□□ -0.3
CLN6-217ENST00000636964 CACNB3P54284 484 aa13.19□□□□□ -0.3
CLN6-217ENST00000636964 GABPB1Q06547 395 aaPredicted RBP13.19□□□□□ -0.3
CLN6-217ENST00000636964 NBPF20Q3BBV1 942 aa13.19□□□□□ -0.3
CLN6-217ENST00000636964 NOSTRINQ8IVI9 506 aa13.19□□□□□ -0.3
CLN6-217ENST00000636964 CNKSR1Q969H4 720 aa13.19□□□□□ -0.3
CLN6-217ENST00000636964 RBM28Q9NW13 759 aaKnown RBP13.19□□□□□ -0.3
CLN6-217ENST00000636964 A0A087WWV3 80 aa13.18□□□□□ -0.3
CLN6-217ENST00000636964 ECE2O60344 883 aa13.18□□□□□ -0.3
CLN6-217ENST00000636964 WDHD1O75717 1129 aaPredicted RBP13.18□□□□□ -0.3
CLN6-217ENST00000636964 YEATS4O95619 227 aa13.18□□□□□ -0.3
CLN6-217ENST00000636964 RBM5P52756 815 aaKnown RBP eCLIP13.18□□□□□ -0.3
CLN6-217ENST00000636964 PPP2R5BQ15173 497 aa13.18□□□□□ -0.3
CLN6-217ENST00000636964 TERF2Q15554 542 aa13.18□□□□□ -0.3
CLN6-217ENST00000636964 ADALQ6DHV7 355 aa13.18□□□□□ -0.3
CLN6-217ENST00000636964 KCNG4Q8TDN1 519 aa13.18□□□□□ -0.3
CLN6-217ENST00000636964 YY1AP1Q9H869 796 aa13.18□□□□□ -0.3
CLN6-217ENST00000636964 MORC2Q9Y6X9 1032 aaPredicted RBP13.18□□□□□ -0.3
CLN6-217ENST00000636964 FAM205CA6NFA0 338 aa13.18□□□□□ -0.3
CLN6-217ENST00000636964 PRPF3O43395 683 aaKnown RBP13.18□□□□□ -0.3
CLN6-217ENST00000636964 CCDC192P0DO97 292 aa13.18□□□□□ -0.3
CLN6-217ENST00000636964 PTGS1P23219 599 aa13.18□□□□□ -0.3
CLN6-217ENST00000636964 NDUFA8P51970 172 aa13.18□□□□□ -0.3
CLN6-217ENST00000636964 LRMPQ12912 555 aa13.18□□□□□ -0.3
CLN6-217ENST00000636964 PODNQ7Z5L7 613 aa13.18□□□□□ -0.3
CLN6-217ENST00000636964 ST7Q9NRC1 585 aa13.18□□□□□ -0.3
CLN6-217ENST00000636964 NAV1Q8NEY1 1877 aa13.18□□□□□ -0.3
CLN6-217ENST00000636964 GOLGA8HP0CJ92 632 aa13.18□□□□□ -0.3
CLN6-217ENST00000636964 TYRO3Q06418 890 aa13.18□□□□□ -0.3
CLN6-217ENST00000636964 SLC39A14Q15043 492 aa13.18□□□□□ -0.3
CLN6-217ENST00000636964 C16orf86Q6ZW13 317 aa13.18□□□□□ -0.3
CLN6-217ENST00000636964 DGKHQ86XP1 1220 aa13.18□□□□□ -0.3
CLN6-217ENST00000636964 KIF18AQ8NI77 898 aa13.18□□□□□ -0.3
CLN6-217ENST00000636964 MRPS27Q92552 414 aaKnown RBP13.18□□□□□ -0.3
CLN6-217ENST00000636964 CLIC6Q96NY7 704 aa13.18□□□□□ -0.3
CLN6-217ENST00000636964 CABP5Q9NP86 173 aa13.18□□□□□ -0.3
CLN6-217ENST00000636964 CDK5RAP2Q96SN8 1893 aa13.17□□□□□ -0.3
CLN6-217ENST00000636964 CDC42EP5Q6NZY7 148 aa13.17□□□□□ -0.3
CLN6-217ENST00000636964 ENGASEQ8NFI3 743 aa13.17□□□□□ -0.3
CLN6-217ENST00000636964 TEKT1Q969V4 418 aa13.17□□□□□ -0.3
CLN6-217ENST00000636964 TMEM47Q9BQJ4 181 aa13.17□□□□□ -0.3
CLN6-217ENST00000636964 CPVLQ9H3G5 476 aa13.17□□□□□ -0.3
CLN6-217ENST00000636964 TOB1P50616 345 aaPredicted RBP13.17□□□□□ -0.3
CLN6-217ENST00000636964 FAM160A1Q05DH4 1040 aa13.17□□□□□ -0.3
CLN6-217ENST00000636964 NFIAQ12857 509 aa13.17□□□□□ -0.3
CLN6-217ENST00000636964 APOBEC3HQ6NTF7 200 aaKnown RBP13.17□□□□□ -0.3
CLN6-217ENST00000636964 C7orf43Q8WVR3 580 aa13.17□□□□□ -0.3
CLN6-217ENST00000636964 MAP3K14Q99558 947 aa13.17□□□□□ -0.3
CLN6-217ENST00000636964 ZBTB12Q9Y330 459 aaPredicted RBP13.17□□□□□ -0.3
CLN6-217ENST00000636964 ROBO3Q96MS0 1386 aa13.17□□□□□ -0.3
CLN6-217ENST00000636964 CNTNAP5Q8WYK1 1306 aa13.17□□□□□ -0.3
CLN6-217ENST00000636964 KINO60870 393 aaKnown RBP13.16□□□□□ -0.3
CLN6-217ENST00000636964 CRKP46108 304 aa13.16□□□□□ -0.3
CLN6-217ENST00000636964 TCP10Q12799 353 aa13.16□□□□□ -0.3
CLN6-217ENST00000636964 NOM1Q5C9Z4 860 aaKnown RBP13.16□□□□□ -0.3
CLN6-217ENST00000636964 EARS2Q5JPH6 523 aaKnown RBP13.16□□□□□ -0.3
CLN6-217ENST00000636964 ZFPM1Q8IX07 1006 aa13.16□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms