RNA–Protein interactions for RNA: ENST00000636228.1

CLN3-246, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,224 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-246ENST00000636228 AKR1B1P15121 316 aa19.51■□□□□ 0.71
CLN3-246ENST00000636228 ATP5JP18859 108 aa19.51■□□□□ 0.71
CLN3-246ENST00000636228 ATP2B2Q01814 1243 aa19.51■□□□□ 0.71
CLN3-246ENST00000636228 COG2Q14746 738 aa19.51■□□□□ 0.71
CLN3-246ENST00000636228 SIAH1Q8IUQ4 282 aa19.51■□□□□ 0.71
CLN3-246ENST00000636228 IVNS1ABPQ9Y6Y0 642 aa19.51■□□□□ 0.71
CLN3-246ENST00000636228 A0A1W2PPC1 479 aa19.5■□□□□ 0.71
CLN3-246ENST00000636228 COL6A1P12109 1028 aa19.5■□□□□ 0.71
CLN3-246ENST00000636228 CNGA1P29973 690 aa19.5■□□□□ 0.71
CLN3-246ENST00000636228 CYP2C19P33261 490 aa19.5■□□□□ 0.71
CLN3-246ENST00000636228 MAGEA10P43363 369 aaPredicted RBP19.5■□□□□ 0.71
CLN3-246ENST00000636228 GRB14Q14449 540 aa19.5■□□□□ 0.71
CLN3-246ENST00000636228 MFSD14CQ5VZR4 134 aa19.5■□□□□ 0.71
CLN3-246ENST00000636228 SAMD1Q6SPF0 538 aaPredicted RBP19.5■□□□□ 0.71
CLN3-246ENST00000636228 TMEM179Q6ZVK1 233 aa19.5■□□□□ 0.71
CLN3-246ENST00000636228 SPICE1Q8N0Z3 855 aa19.5■□□□□ 0.71
CLN3-246ENST00000636228 HAUS7Q99871 368 aa19.5■□□□□ 0.71
CLN3-246ENST00000636228 MOV10L1Q9BXT6 1211 aaKnown RBP19.5■□□□□ 0.71
CLN3-246ENST00000636228 RCAN3Q9UKA8 241 aa19.5■□□□□ 0.71
CLN3-246ENST00000636228 LRRC26Q2I0M4 334 aa19.49■□□□□ 0.71
CLN3-246ENST00000636228 TRPV1Q8NER1 839 aa19.49■□□□□ 0.71
CLN3-246ENST00000636228 HOXC10Q9NYD6 342 aa19.49■□□□□ 0.71
CLN3-246ENST00000636228 SWAP70Q9UH65 585 aa19.49■□□□□ 0.71
CLN3-246ENST00000636228 USP17L12C9JPN9 530 aa19.48■□□□□ 0.71
CLN3-246ENST00000636228 USP17L21D6R901 530 aa19.48■□□□□ 0.71
CLN3-246ENST00000636228 CDK8P49336 464 aa19.48■□□□□ 0.71
CLN3-246ENST00000636228 PLS1Q14651 629 aa19.48■□□□□ 0.71
CLN3-246ENST00000636228 ATP8A2Q9NTI2 1148 aa19.48■□□□□ 0.71
CLN3-246ENST00000636228 DDX60LQ5H9U9 1706 aaKnown RBP19.48■□□□□ 0.71
CLN3-246ENST00000636228 ALPK3Q96L96 1907 aa19.47■□□□□ 0.71
CLN3-246ENST00000636228 HOXC6P09630 235 aa19.47■□□□□ 0.71
CLN3-246ENST00000636228 ERCC3P19447 782 aa19.47■□□□□ 0.71
CLN3-246ENST00000636228 ADORA2AP29274 412 aa19.47■□□□□ 0.71
CLN3-246ENST00000636228 DSG3P32926 999 aa19.47■□□□□ 0.71
CLN3-246ENST00000636228 BMP8BP34820 402 aa19.47■□□□□ 0.71
CLN3-246ENST00000636228 C12orf60Q5U649 245 aa19.47■□□□□ 0.71
CLN3-246ENST00000636228 DPP9Q86TI2 863 aa19.47■□□□□ 0.71
CLN3-246ENST00000636228 ATG4CQ96DT6 458 aa19.47■□□□□ 0.71
CLN3-246ENST00000636228 DDX24Q9GZR7 859 aaKnown RBP eCLIP19.47■□□□□ 0.712e-6■■■■■ 40.7
CLN3-246ENST00000636228 SPATC1LQ9H0A9 340 aa19.47■□□□□ 0.71
CLN3-246ENST00000636228 PUS7LQ9H0K6 701 aaKnown RBP19.47■□□□□ 0.71
CLN3-246ENST00000636228 DDX20Q9UHI6 824 aaKnown RBP19.47■□□□□ 0.71
CLN3-246ENST00000636228 SLC4A4Q9Y6R1 1079 aa19.47■□□□□ 0.71
CLN3-246ENST00000636228 FLOT1O75955 427 aa19.46■□□□□ 0.71
CLN3-246ENST00000636228 ICA1Q05084 483 aa19.46■□□□□ 0.71
CLN3-246ENST00000636228 LRRCC1Q9C099 1032 aa19.46■□□□□ 0.71
CLN3-246ENST00000636228 SENP6Q9GZR1 1112 aaPredicted RBP19.46■□□□□ 0.71
CLN3-246ENST00000636228 ARHGEF10LQ9HCE6 1279 aa19.46■□□□□ 0.71
CLN3-246ENST00000636228 TMX2Q9Y320 296 aa19.46■□□□□ 0.71
CLN3-246ENST00000636228 COBLO75128 1261 aa19.45■□□□□ 0.7
CLN3-246ENST00000636228 UBE3CQ15386 1083 aa19.45■□□□□ 0.7
CLN3-246ENST00000636228 ANO1Q5XXA6 986 aa19.45■□□□□ 0.7
CLN3-246ENST00000636228 CTR9Q6PD62 1173 aa19.45■□□□□ 0.7
CLN3-246ENST00000636228 NCAPG2Q86XI2 1143 aa19.45■□□□□ 0.7
CLN3-246ENST00000636228 STK11IPQ8N1F8 1099 aa19.45■□□□□ 0.7
CLN3-246ENST00000636228 VCPKMTQ9H867 229 aa19.45■□□□□ 0.7
CLN3-246ENST00000636228 NAV1Q8NEY1 1877 aa19.45■□□□□ 0.7
CLN3-246ENST00000636228 IGHA2P01877 340 aa19.44■□□□□ 0.7
CLN3-246ENST00000636228 EEF2P13639 858 aaKnown RBP19.44■□□□□ 0.7
CLN3-246ENST00000636228 ATN1P54259 1190 aaPredicted RBP19.44■□□□□ 0.7
CLN3-246ENST00000636228 PRAMEF19Q5SWL8 479 aa19.44■□□□□ 0.7
CLN3-246ENST00000636228 C16orf86Q6ZW13 317 aa19.44■□□□□ 0.7
CLN3-246ENST00000636228 UBE2OQ9C0C9 1292 aaKnown RBP19.44■□□□□ 0.7
CLN3-246ENST00000636228 CHMP4BQ9H444 224 aaKnown RBP19.44■□□□□ 0.7
CLN3-246ENST00000636228 RAD21O60216 631 aa19.43■□□□□ 0.7
CLN3-246ENST00000636228 CYBAP13498 195 aa19.43■□□□□ 0.7
CLN3-246ENST00000636228 MDM2Q00987 491 aaPredicted RBP19.43■□□□□ 0.7
CLN3-246ENST00000636228 GJC2Q5T442 439 aaPredicted RBP19.43■□□□□ 0.7
CLN3-246ENST00000636228 TSHZ3Q63HK5 1081 aa19.43■□□□□ 0.7
CLN3-246ENST00000636228 AMOTL1Q8IY63 956 aa19.43■□□□□ 0.7
CLN3-246ENST00000636228 LPAR1Q92633 364 aa19.43■□□□□ 0.7
CLN3-246ENST00000636228 CCDC17Q96LX7 622 aa19.43■□□□□ 0.7
CLN3-246ENST00000636228 FBXO28Q9NVF7 368 aa19.43■□□□□ 0.7
CLN3-246ENST00000636228 STRNO43815 780 aa19.42■□□□□ 0.7
CLN3-246ENST00000636228 MYCNP04198 464 aaPredicted RBP19.42■□□□□ 0.7
CLN3-246ENST00000636228 TMEM132BQ14DG7 1078 aa19.42■□□□□ 0.7
CLN3-246ENST00000636228 ZSCAN25Q6NSZ9 544 aa19.42■□□□□ 0.7
CLN3-246ENST00000636228 Q7L0L9 218 aa19.42■□□□□ 0.7
CLN3-246ENST00000636228 MB21D1Q8N884 522 aa19.42■□□□□ 0.7
CLN3-246ENST00000636228 SHCBP1Q8NEM2 672 aa19.42■□□□□ 0.7
CLN3-246ENST00000636228 DDRGK1Q96HY6 314 aa19.42■□□□□ 0.7
CLN3-246ENST00000636228 OLFML2BQ68BL8 750 aa19.41■□□□□ 0.7
CLN3-246ENST00000636228 TDHQ8IZJ6 230 aa19.41■□□□□ 0.7
CLN3-246ENST00000636228 STRBPQ96SI9 672 aaKnown RBP19.41■□□□□ 0.7
CLN3-246ENST00000636228 MROH8Q9H579 483 aa19.41■□□□□ 0.7
CLN3-246ENST00000636228 SH2D4AQ9H788 454 aa19.41■□□□□ 0.7
CLN3-246ENST00000636228 ECHDC1Q9NTX5 307 aa19.41■□□□□ 0.7
CLN3-246ENST00000636228 WDR46O15213 610 aaKnown RBP19.4■□□□□ 0.7
CLN3-246ENST00000636228 MSCO60682 206 aa19.4■□□□□ 0.7
CLN3-246ENST00000636228 GNL3Q9BVP2 549 aaKnown RBP eCLIP19.4■□□□□ 0.7
CLN3-246ENST00000636228 KANSL2Q9H9L4 492 aa19.4■□□□□ 0.7
CLN3-246ENST00000636228 LAMA3Q16787 3333 aa19.4■□□□□ 0.7
CLN3-246ENST00000636228 DNM1LO00429 736 aa19.39■□□□□ 0.69
CLN3-246ENST00000636228 PGK2P07205 417 aa19.39■□□□□ 0.69
CLN3-246ENST00000636228 FAM83BQ5T0W9 1011 aa19.39■□□□□ 0.69
CLN3-246ENST00000636228 OSBP2Q969R2 916 aa19.39■□□□□ 0.69
CLN3-246ENST00000636228 MAML3Q96JK9 1138 aa19.39■□□□□ 0.69
CLN3-246ENST00000636228 GSG1L2A8MUP6 293 aa19.38■□□□□ 0.69
CLN3-246ENST00000636228 MINDY4BA8MYZ0 360 aa19.38■□□□□ 0.69
CLN3-246ENST00000636228 FCER1AP12319 257 aa19.38■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 79.9 ms