RNA–Protein interactions for RNA: ENST00000635958.1

CLN3-242, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,837 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-242ENST00000635958 EAPPQ56P03 285 aaPredicted RBP16.46■□□□□ 0.23
CLN3-242ENST00000635958 CDC37L1Q7L3B6 337 aa16.46■□□□□ 0.23
CLN3-242ENST00000635958 RAB11FIP4Q86YS3 637 aa16.46■□□□□ 0.23
CLN3-242ENST00000635958 NUP133Q8WUM0 1156 aa16.46■□□□□ 0.23
CLN3-242ENST00000635958 RBM28Q9NW13 759 aaKnown RBP16.46■□□□□ 0.23
CLN3-242ENST00000635958 ADM5C9JUS6 153 aa16.45■□□□□ 0.22
CLN3-242ENST00000635958 EEF2P13639 858 aaKnown RBP16.45■□□□□ 0.22
CLN3-242ENST00000635958 SSC5DA1L4H1 1573 aa16.45■□□□□ 0.22
CLN3-242ENST00000635958 CPLX1O14810 134 aa16.45■□□□□ 0.22
CLN3-242ENST00000635958 IFNAR1P17181 557 aa16.45■□□□□ 0.22
CLN3-242ENST00000635958 GJB2P29033 226 aa16.45■□□□□ 0.22
CLN3-242ENST00000635958 C1QTNF8P60827 252 aa16.45■□□□□ 0.22
CLN3-242ENST00000635958 HMGN5P82970 282 aaKnown RBP16.45■□□□□ 0.22
CLN3-242ENST00000635958 ICA1Q05084 483 aa16.45■□□□□ 0.22
CLN3-242ENST00000635958 GRM4Q14833 912 aa16.45■□□□□ 0.22
CLN3-242ENST00000635958 CPLX2Q6PUV4 134 aaKnown RBP16.45■□□□□ 0.22
CLN3-242ENST00000635958 USP48Q86UV5 1035 aa16.45■□□□□ 0.22
CLN3-242ENST00000635958 CLEC10AQ8IUN9 316 aa16.45■□□□□ 0.22
CLN3-242ENST00000635958 KLRG1Q96E93 195 aa16.45■□□□□ 0.22
CLN3-242ENST00000635958 JAK2O60674 1132 aa16.44■□□□□ 0.22
CLN3-242ENST00000635958 CDKL5O76039 1030 aa16.44■□□□□ 0.22
CLN3-242ENST00000635958 SNHG28P0DPA3 235 aa16.44■□□□□ 0.22
CLN3-242ENST00000635958 CCDC144CPQ8IYA2 1237 aa16.44■□□□□ 0.22
CLN3-242ENST00000635958 CTCFLQ8NI51 663 aaPredicted RBP16.44■□□□□ 0.22
CLN3-242ENST00000635958 RRAGDQ9NQL2 400 aaPredicted RBP16.44■□□□□ 0.22
CLN3-242ENST00000635958 PTPDC1A2A3K4 754 aa16.43■□□□□ 0.22
CLN3-242ENST00000635958 PALM3A6NDB9 673 aaPredicted RBP16.43■□□□□ 0.22
CLN3-242ENST00000635958 USP2O75604 605 aaPredicted RBP16.43■□□□□ 0.22
CLN3-242ENST00000635958 KIF5BP33176 963 aa16.43■□□□□ 0.22
CLN3-242ENST00000635958 FUT2Q10981 343 aa16.43■□□□□ 0.22
CLN3-242ENST00000635958 GZF1Q9H116 711 aaPredicted RBP16.43■□□□□ 0.22
CLN3-242ENST00000635958 PDIA4P13667 645 aaKnown RBP16.42■□□□□ 0.22
CLN3-242ENST00000635958 FDPSP14324 419 aaKnown RBP16.42■□□□□ 0.22
CLN3-242ENST00000635958 INPP5BP32019 993 aa16.42■□□□□ 0.22
CLN3-242ENST00000635958 GNAQP50148 359 aa16.42■□□□□ 0.22
CLN3-242ENST00000635958 KLHL40Q2TBA0 621 aa16.42■□□□□ 0.22
CLN3-242ENST00000635958 DLK2Q6UY11 383 aa16.42■□□□□ 0.22
CLN3-242ENST00000635958 NBPF11Q86T75 865 aa16.42■□□□□ 0.22
CLN3-242ENST00000635958 ANP32BQ92688 251 aaKnown RBP16.42■□□□□ 0.22
CLN3-242ENST00000635958 CDCA5Q96FF9 252 aa16.42■□□□□ 0.22
CLN3-242ENST00000635958 MAD2L2Q9UI95 211 aa16.42■□□□□ 0.22
CLN3-242ENST00000635958 TMX2Q9Y320 296 aa16.42■□□□□ 0.22
CLN3-242ENST00000635958 POTEIP0CG38 1075 aa16.42■□□□□ 0.22
CLN3-242ENST00000635958 POTEJP0CG39 1038 aa16.42■□□□□ 0.22
CLN3-242ENST00000635958 PDHBP11177 359 aa16.42■□□□□ 0.22
CLN3-242ENST00000635958 NOL9Q5SY16 702 aaKnown RBP16.42■□□□□ 0.22
CLN3-242ENST00000635958 TMTC3Q6ZXV5 915 aa16.42■□□□□ 0.22
CLN3-242ENST00000635958 LDHDQ86WU2 507 aa16.42■□□□□ 0.22
CLN3-242ENST00000635958 LRRC47Q8N1G4 583 aaKnown RBP16.42■□□□□ 0.22
CLN3-242ENST00000635958 GMCL1P1Q8NEA9 526 aa16.42■□□□□ 0.22
CLN3-242ENST00000635958 DDX55Q8NHQ9 600 aaKnown RBP eCLIP16.42■□□□□ 0.22
CLN3-242ENST00000635958 TRIM44Q96DX7 344 aaPredicted RBP16.42■□□□□ 0.22
CLN3-242ENST00000635958 GLIS2Q9BZE0 524 aaPredicted RBP16.42■□□□□ 0.22
CLN3-242ENST00000635958 MYH4Q9Y623 1939 aa16.42■□□□□ 0.22
CLN3-242ENST00000635958 A0A1W2PRG0 241 aa16.41■□□□□ 0.22
CLN3-242ENST00000635958 PPP1R12BO60237 982 aaPredicted RBP16.41■□□□□ 0.22
CLN3-242ENST00000635958 SMARCA1P28370 1054 aa16.41■□□□□ 0.22
CLN3-242ENST00000635958 SCYL3Q8IZE3 742 aa16.41■□□□□ 0.22
CLN3-242ENST00000635958 WRNIP1Q96S55 665 aa16.41■□□□□ 0.22
CLN3-242ENST00000635958 LZTS2Q9BRK4 669 aa16.41■□□□□ 0.22
CLN3-242ENST00000635958 ARHGEF10LQ9HCE6 1279 aa16.41■□□□□ 0.22
CLN3-242ENST00000635958 NMRK2Q9NPI5 230 aa16.41■□□□□ 0.22
CLN3-242ENST00000635958 CLEC11AQ9Y240 323 aa16.41■□□□□ 0.22
CLN3-242ENST00000635958 STK36Q9NRP7 1315 aa16.41■□□□□ 0.22
CLN3-242ENST00000635958 FMNL1O95466 1100 aaPredicted RBP16.4■□□□□ 0.22
CLN3-242ENST00000635958 PDCP20941 246 aa16.4■□□□□ 0.22
CLN3-242ENST00000635958 ATP2B2Q01814 1243 aa16.4■□□□□ 0.22
CLN3-242ENST00000635958 CCDC173Q0VFZ6 552 aa16.4■□□□□ 0.22
CLN3-242ENST00000635958 MAP3K11Q16584 847 aa16.4■□□□□ 0.22
CLN3-242ENST00000635958 STAG2Q8N3U4 1231 aa16.4■□□□□ 0.22
CLN3-242ENST00000635958 SRBD1Q8N5C6 995 aaKnown RBP16.4■□□□□ 0.22
CLN3-242ENST00000635958 RGS22Q8NE09 1264 aa16.4■□□□□ 0.22
CLN3-242ENST00000635958 ORC3Q9UBD5 711 aaPredicted RBP16.4■□□□□ 0.22
CLN3-242ENST00000635958 KIF3AQ9Y496 699 aa16.4■□□□□ 0.22
CLN3-242ENST00000635958 USP17L5A8MUK1 530 aa16.4■□□□□ 0.22
CLN3-242ENST00000635958 F5H6K3 240 aa16.4■□□□□ 0.22
CLN3-242ENST00000635958 DTNBO60941 627 aa16.4■□□□□ 0.22
CLN3-242ENST00000635958 PLEKHA8P1O95397 391 aa16.4■□□□□ 0.22
CLN3-242ENST00000635958 PARP1P09874 1014 aaKnown RBP16.4■□□□□ 0.22
CLN3-242ENST00000635958 SYT1P21579 422 aa16.4■□□□□ 0.22
CLN3-242ENST00000635958 NF2P35240 595 aa16.4■□□□□ 0.22
CLN3-242ENST00000635958 MAP3K9P80192 1104 aa16.4■□□□□ 0.22
CLN3-242ENST00000635958 KLRC3Q07444 240 aa16.4■□□□□ 0.22
CLN3-242ENST00000635958 ASPRV1Q53RT3 343 aa16.4■□□□□ 0.22
CLN3-242ENST00000635958 ACER1Q8TDN7 264 aa16.4■□□□□ 0.22
CLN3-242ENST00000635958 DDX11Q96FC9 970 aa16.4■□□□□ 0.22
CLN3-242ENST00000635958 GMCL1Q96IK5 515 aa16.4■□□□□ 0.22
CLN3-242ENST00000635958 WDR18Q9BV38 432 aa16.4■□□□□ 0.22
CLN3-242ENST00000635958 RNF26Q9BY78 433 aaPredicted RBP16.4■□□□□ 0.22
CLN3-242ENST00000635958 SH2D4AQ9H788 454 aa16.4■□□□□ 0.22
CLN3-242ENST00000635958 ATAD5Q96QE3 1844 aa16.39■□□□□ 0.22
CLN3-242ENST00000635958 PRPF3O43395 683 aaKnown RBP16.39■□□□□ 0.21
CLN3-242ENST00000635958 SSRP1Q08945 709 aaKnown RBP16.39■□□□□ 0.21
CLN3-242ENST00000635958 ZNF543Q08ER8 600 aa16.39■□□□□ 0.21
CLN3-242ENST00000635958 LARP1BQ659C4 914 aaKnown RBP16.39■□□□□ 0.21
CLN3-242ENST00000635958 MAP1SQ66K74 1059 aaPredicted RBP16.39■□□□□ 0.21
CLN3-242ENST00000635958 USP17L2Q6R6M4 530 aa16.39■□□□□ 0.21
CLN3-242ENST00000635958 FAM184AQ8NB25 1140 aa16.39■□□□□ 0.21
CLN3-242ENST00000635958 DCAF4Q8WV16 495 aa16.39■□□□□ 0.21
CLN3-242ENST00000635958 PHKBQ93100 1093 aa16.39■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms