RNA–Protein interactions for RNA: ENST00000635450.2

LINC00339-209, long intergenic non-protein coding RNA 339, humanhuman

TSL 5

Gene LINC00339, Length 947 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-209ENST00000635450 CATSPERGQ6ZRH7 1159 aa18.65■□□□□ 0.58
LINC00339-209ENST00000635450 GPR142Q7Z601 462 aa18.65■□□□□ 0.58
LINC00339-209ENST00000635450 SIAH1Q8IUQ4 282 aa18.65■□□□□ 0.58
LINC00339-209ENST00000635450 XRN2Q9H0D6 950 aaKnown RBP eCLIP18.65■□□□□ 0.58
LINC00339-209ENST00000635450 ZNF236Q9UL36 1845 aa18.65■□□□□ 0.58
LINC00339-209ENST00000635450 TRIM6-TRIM34B2RNG4 842 aa18.64■□□□□ 0.57
LINC00339-209ENST00000635450 CDK8P49336 464 aa18.64■□□□□ 0.57
LINC00339-209ENST00000635450 USP14P54578 494 aa18.64■□□□□ 0.57
LINC00339-209ENST00000635450 CTR9Q6PD62 1173 aa18.64■□□□□ 0.57
LINC00339-209ENST00000635450 NKX2-3Q8TAU0 364 aa18.64■□□□□ 0.57
LINC00339-209ENST00000635450 DIS3LQ8TF46 1054 aaKnown RBP18.64■□□□□ 0.57
LINC00339-209ENST00000635450 USP6NLQ92738 828 aa18.64■□□□□ 0.57
LINC00339-209ENST00000635450 OSBP2Q969R2 916 aa18.64■□□□□ 0.57
LINC00339-209ENST00000635450 EPB41L4AQ9HCS5 686 aaPredicted RBP18.64■□□□□ 0.57
LINC00339-209ENST00000635450 M0R2C6 588 aa18.63■□□□□ 0.57
LINC00339-209ENST00000635450 MORN1Q5T089 497 aa18.63■□□□□ 0.57
LINC00339-209ENST00000635450 TMEM179Q6ZVK1 233 aa18.63■□□□□ 0.57
LINC00339-209ENST00000635450 C16orf86Q6ZW13 317 aa18.63■□□□□ 0.57
LINC00339-209ENST00000635450 STRBPQ96SI9 672 aaKnown RBP18.63■□□□□ 0.57
LINC00339-209ENST00000635450 CRISPLD2Q9H0B8 497 aa18.63■□□□□ 0.57
LINC00339-209ENST00000635450 SWAP70Q9UH65 585 aa18.63■□□□□ 0.57
LINC00339-209ENST00000635450 GNAT2P19087 354 aa18.62■□□□□ 0.57
LINC00339-209ENST00000635450 MAPK4P31152 587 aa18.62■□□□□ 0.57
LINC00339-209ENST00000635450 ICA1Q05084 483 aa18.62■□□□□ 0.57
LINC00339-209ENST00000635450 PLEKHM2Q8IWE5 1019 aa18.62■□□□□ 0.57
LINC00339-209ENST00000635450 SPICE1Q8N0Z3 855 aa18.62■□□□□ 0.57
LINC00339-209ENST00000635450 STK11IPQ8N1F8 1099 aa18.62■□□□□ 0.57
LINC00339-209ENST00000635450 NUDT12Q9BQG2 462 aa18.62■□□□□ 0.57
LINC00339-209ENST00000635450 OSBPL3Q9H4L5 887 aa18.62■□□□□ 0.57
LINC00339-209ENST00000635450 RABGAP1Q9Y3P9 1069 aa18.62■□□□□ 0.57
LINC00339-209ENST00000635450 ZNFX1Q9P2E3 1918 aaKnown RBP18.62■□□□□ 0.57
LINC00339-209ENST00000635450 GSG1L2A8MUP6 293 aa18.61■□□□□ 0.57
LINC00339-209ENST00000635450 GPAA1O43292 621 aa18.61■□□□□ 0.57
LINC00339-209ENST00000635450 PRKAR2AP13861 404 aaKnown RBP18.61■□□□□ 0.57
LINC00339-209ENST00000635450 HABP4Q5JVS0 413 aaKnown RBP18.61■□□□□ 0.57
LINC00339-209ENST00000635450 MAP3K21Q5TCX8 1036 aa18.61■□□□□ 0.57
LINC00339-209ENST00000635450 LBX2Q6XYB7 198 aa18.61■□□□□ 0.57
LINC00339-209ENST00000635450 PLEKHH3Q7Z736 793 aa18.61■□□□□ 0.57
LINC00339-209ENST00000635450 GTF3C2Q8WUA4 911 aaPredicted RBP18.61■□□□□ 0.57
LINC00339-209ENST00000635450 SOCS4Q8WXH5 440 aa18.61■□□□□ 0.57
LINC00339-209ENST00000635450 RILPL2Q969X0 211 aa18.61■□□□□ 0.57
LINC00339-209ENST00000635450 SEC62Q99442 399 aaKnown RBP18.61■□□□□ 0.57
LINC00339-209ENST00000635450 TANGO6Q9C0B7 1094 aa18.61■□□□□ 0.57
LINC00339-209ENST00000635450 ROBO3Q96MS0 1386 aa18.6■□□□□ 0.57
LINC00339-209ENST00000635450 MNX1P50219 401 aaPredicted RBP18.6■□□□□ 0.57
LINC00339-209ENST00000635450 ZMYM1Q5SVZ6 1142 aa18.6■□□□□ 0.57
LINC00339-209ENST00000635450 TICAM2Q86XR7 235 aa18.6■□□□□ 0.57
LINC00339-209ENST00000635450 GNL3Q9BVP2 549 aaKnown RBP eCLIP18.6■□□□□ 0.57
LINC00339-209ENST00000635450 FLRT1Q9NZU1 646 aa18.6■□□□□ 0.57
LINC00339-209ENST00000635450 COLQQ9Y215 455 aaPredicted RBP18.6■□□□□ 0.57
LINC00339-209ENST00000635450 PLXNA1Q9UIW2 1896 aa18.59■□□□□ 0.57
LINC00339-209ENST00000635450 RPTORQ8N122 1335 aa18.59■□□□□ 0.57
LINC00339-209ENST00000635450 TFRCP02786 760 aaKnown RBP18.59■□□□□ 0.57
LINC00339-209ENST00000635450 APPP05067 770 aa18.59■□□□□ 0.57
LINC00339-209ENST00000635450 WDR78Q5VTH9 848 aa18.59■□□□□ 0.57
LINC00339-209ENST00000635450 GIMAP6Q6P9H5 292 aa18.59■□□□□ 0.57
LINC00339-209ENST00000635450 DPF3Q92784 378 aa18.59■□□□□ 0.57
LINC00339-209ENST00000635450 APBA2Q99767 749 aa18.59■□□□□ 0.57
LINC00339-209ENST00000635450 PCDH10Q9P2E7 1040 aa18.59■□□□□ 0.57
LINC00339-209ENST00000635450 ARPP21Q9UBL0 812 aaPredicted RBP18.59■□□□□ 0.57
LINC00339-209ENST00000635450 XRCC5P13010 732 aaKnown RBP18.58■□□□□ 0.56
LINC00339-209ENST00000635450 EEF2P13639 858 aaKnown RBP18.58■□□□□ 0.56
LINC00339-209ENST00000635450 ZKSCAN1P17029 563 aaPredicted RBP18.58■□□□□ 0.56
LINC00339-209ENST00000635450 CCND3P30281 292 aaPredicted RBP18.58■□□□□ 0.56
LINC00339-209ENST00000635450 RGS2P41220 211 aa18.58■□□□□ 0.56
LINC00339-209ENST00000635450 CACNB2Q08289 660 aaPredicted RBP18.58■□□□□ 0.56
LINC00339-209ENST00000635450 CCAR1Q8IX12 1150 aaKnown RBP18.58■□□□□ 0.56
LINC00339-209ENST00000635450 ATG4CQ96DT6 458 aa18.58■□□□□ 0.56
LINC00339-209ENST00000635450 PAWRQ96IZ0 340 aaKnown RBP18.58■□□□□ 0.56
LINC00339-209ENST00000635450 VCPKMTQ9H867 229 aa18.58■□□□□ 0.56
LINC00339-209ENST00000635450 TMX2Q9Y320 296 aa18.58■□□□□ 0.56
LINC00339-209ENST00000635450 SZT2Q5T011 3432 aa18.58■□□□□ 0.56
LINC00339-209ENST00000635450 PATL2C9JE40 543 aaKnown RBP18.57■□□□□ 0.56
LINC00339-209ENST00000635450 NEFLP07196 543 aa18.57■□□□□ 0.56
LINC00339-209ENST00000635450 RASA1P20936 1047 aa18.57■□□□□ 0.56
LINC00339-209ENST00000635450 TDO2P48775 406 aa18.57■□□□□ 0.56
LINC00339-209ENST00000635450 ATP2B2Q01814 1243 aa18.57■□□□□ 0.56
LINC00339-209ENST00000635450 MAP2K5Q13163 448 aa18.57■□□□□ 0.56
LINC00339-209ENST00000635450 SAMD1Q6SPF0 538 aaPredicted RBP18.57■□□□□ 0.56
LINC00339-209ENST00000635450 NPLOC4Q8TAT6 608 aa18.57■□□□□ 0.56
LINC00339-209ENST00000635450 MOV10L1Q9BXT6 1211 aaKnown RBP18.57■□□□□ 0.56
LINC00339-209ENST00000635450 NACAP1Q9BZK3 213 aa18.57■□□□□ 0.56
LINC00339-209ENST00000635450 ARHGEF10LQ9HCE6 1279 aa18.57■□□□□ 0.56
LINC00339-209ENST00000635450 HMX1Q9NP08 348 aaPredicted RBP18.57■□□□□ 0.56
LINC00339-209ENST00000635450 HELLSQ9NRZ9 838 aa18.57■□□□□ 0.56
LINC00339-209ENST00000635450 FBXO28Q9NVF7 368 aa18.57■□□□□ 0.56
LINC00339-209ENST00000635450 MINDY4BA8MYZ0 360 aa18.56■□□□□ 0.56
LINC00339-209ENST00000635450 CENPBP07199 599 aaPredicted RBP18.56■□□□□ 0.56
LINC00339-209ENST00000635450 PTPREP23469 700 aa18.56■□□□□ 0.56
LINC00339-209ENST00000635450 CCNA1P78396 465 aa18.56■□□□□ 0.56
LINC00339-209ENST00000635450 GRB14Q14449 540 aa18.56■□□□□ 0.56
LINC00339-209ENST00000635450 COG2Q14746 738 aa18.56■□□□□ 0.56
LINC00339-209ENST00000635450 SBK1Q52WX2 424 aa18.56■□□□□ 0.56
LINC00339-209ENST00000635450 CCDC17Q96LX7 622 aa18.56■□□□□ 0.56
LINC00339-209ENST00000635450 CWC22Q9HCG8 908 aaKnown RBP18.56■□□□□ 0.56
LINC00339-209ENST00000635450 FOXP2O15409 715 aa18.55■□□□□ 0.56
LINC00339-209ENST00000635450 FLOT1O75955 427 aa18.55■□□□□ 0.56
LINC00339-209ENST00000635450 CHRDL2Q6WN34 429 aa18.55■□□□□ 0.56
LINC00339-209ENST00000635450 LPAR1Q92633 364 aa18.55■□□□□ 0.56
LINC00339-209ENST00000635450 HTATIP2Q9BUP3 242 aa18.55■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms