RNA–Protein interactions for RNA: ENST00000627587.2

PDLIM5-223, Transcript of PDZ and LIM domain 5, humanhuman

TSL 2

Gene PDLIM5, Length 1,853 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-223ENST00000627587 ELP3Q9H9T3 547 aa11.13□□□□□ -0.63
PDLIM5-223ENST00000627587 ZCCHC17Q9NP64 241 aaKnown RBP11.13□□□□□ -0.63
PDLIM5-223ENST00000627587 DDX4Q9NQI0 724 aaKnown RBP11.13□□□□□ -0.63
PDLIM5-223ENST00000627587 TOMM22Q9NS69 142 aa11.13□□□□□ -0.63
PDLIM5-223ENST00000627587 CSADQ9Y600 493 aa11.13□□□□□ -0.63
PDLIM5-223ENST00000627587 ORC4O43929 436 aa11.12□□□□□ -0.63
PDLIM5-223ENST00000627587 PCP11498 1178 aaKnown RBP11.12□□□□□ -0.63
PDLIM5-223ENST00000627587 GJA5P36382 358 aa11.12□□□□□ -0.63
PDLIM5-223ENST00000627587 LIFRP42702 1097 aa11.12□□□□□ -0.63
PDLIM5-223ENST00000627587 CRKP46108 304 aa11.12□□□□□ -0.63
PDLIM5-223ENST00000627587 FKBP1CQ5VVH2 108 aa11.12□□□□□ -0.63
PDLIM5-223ENST00000627587 RAB11FIP4Q86YS3 637 aa11.12□□□□□ -0.63
PDLIM5-223ENST00000627587 TEX11Q8IYF3 940 aa11.12□□□□□ -0.63
PDLIM5-223ENST00000627587 DYNLL2Q96FJ2 89 aa11.12□□□□□ -0.63
PDLIM5-223ENST00000627587 MS4A4AQ96JQ5 239 aa11.12□□□□□ -0.63
PDLIM5-223ENST00000627587 PTPN18Q99952 460 aa11.12□□□□□ -0.63
PDLIM5-223ENST00000627587 FAM217BQ9NTX9 383 aaPredicted RBP11.12□□□□□ -0.63
PDLIM5-223ENST00000627587 MYH6P13533 1939 aa11.12□□□□□ -0.63
PDLIM5-223ENST00000627587 GREB1LQ9C091 1923 aaPredicted RBP11.12□□□□□ -0.63
PDLIM5-223ENST00000627587 BAG4O95429 457 aaKnown RBP11.12□□□□□ -0.63
PDLIM5-223ENST00000627587 SLC3A2P08195 630 aaKnown RBP11.12□□□□□ -0.63
PDLIM5-223ENST00000627587 TMEM67Q5HYA8 995 aa11.12□□□□□ -0.63
PDLIM5-223ENST00000627587 FOXD4L5Q5VV16 416 aaPredicted RBP11.12□□□□□ -0.63
PDLIM5-223ENST00000627587 CDC42EP5Q6NZY7 148 aa11.12□□□□□ -0.63
PDLIM5-223ENST00000627587 PPP1R3FQ6ZSY5 799 aaPredicted RBP11.12□□□□□ -0.63
PDLIM5-223ENST00000627587 AMOTL1Q8IY63 956 aa11.12□□□□□ -0.63
PDLIM5-223ENST00000627587 FOXD4L4Q8WXT5 416 aaPredicted RBP11.12□□□□□ -0.63
PDLIM5-223ENST00000627587 CHMP4CQ96CF2 233 aa11.12□□□□□ -0.63
PDLIM5-223ENST00000627587 ZDHHC15Q96MV8 337 aa11.12□□□□□ -0.63
PDLIM5-223ENST00000627587 TEPSINQ96N21 525 aa11.12□□□□□ -0.63
PDLIM5-223ENST00000627587 MTA3Q9BTC8 594 aa11.12□□□□□ -0.63
PDLIM5-223ENST00000627587 SAP30BPQ9UHR5 308 aaKnown RBP11.12□□□□□ -0.63
PDLIM5-223ENST00000627587 NAP1L2Q9ULW6 460 aaPredicted RBP11.12□□□□□ -0.63
PDLIM5-223ENST00000627587 MTMR6Q9Y217 621 aa11.12□□□□□ -0.63
PDLIM5-223ENST00000627587 NID2Q14112 1375 aa11.12□□□□□ -0.63
PDLIM5-223ENST00000627587 GOLGA8BA8MQT2 603 aa11.11□□□□□ -0.63
PDLIM5-223ENST00000627587 STX6O43752 255 aa11.11□□□□□ -0.63
PDLIM5-223ENST00000627587 GNRH1P01148 92 aa11.11□□□□□ -0.63
PDLIM5-223ENST00000627587 FDPSP14324 419 aaKnown RBP11.11□□□□□ -0.63
PDLIM5-223ENST00000627587 PRMT2P55345 433 aa11.11□□□□□ -0.63
PDLIM5-223ENST00000627587 KIF22Q14807 665 aa11.11□□□□□ -0.63
PDLIM5-223ENST00000627587 TAF1CQ15572 869 aaPredicted RBP11.11□□□□□ -0.63
PDLIM5-223ENST00000627587 FAM83AQ86UY5 434 aa11.11□□□□□ -0.63
PDLIM5-223ENST00000627587 ENAHQ8N8S7 591 aaPredicted RBP11.11□□□□□ -0.63
PDLIM5-223ENST00000627587 SLC44A5Q8NCS7 719 aa11.11□□□□□ -0.63
PDLIM5-223ENST00000627587 DDX55Q8NHQ9 600 aaKnown RBP eCLIP11.11□□□□□ -0.631e-6■■■□□ 17.2
PDLIM5-223ENST00000627587 ESR2Q92731 530 aa11.11□□□□□ -0.63
PDLIM5-223ENST00000627587 TEKT1Q969V4 418 aa11.11□□□□□ -0.63
PDLIM5-223ENST00000627587 LLPHQ9BRT6 129 aaKnown RBP11.11□□□□□ -0.63
PDLIM5-223ENST00000627587 MYL10Q9BUA6 226 aa11.11□□□□□ -0.63
PDLIM5-223ENST00000627587 TMOD2Q9NZR1 351 aa11.11□□□□□ -0.63
PDLIM5-223ENST00000627587 CCL15-CCL14A0A0B4J2E2 113 aa11.1□□□□□ -0.63
PDLIM5-223ENST00000627587 POTEFA5A3E0 1075 aa11.1□□□□□ -0.63
PDLIM5-223ENST00000627587 TCP10L2B9ZVM9 353 aa11.1□□□□□ -0.63
PDLIM5-223ENST00000627587 IFIT3O14879 490 aaKnown RBP11.1□□□□□ -0.63
PDLIM5-223ENST00000627587 NMT2O60551 498 aa11.1□□□□□ -0.63
PDLIM5-223ENST00000627587 PPFIA3O75145 1194 aa11.1□□□□□ -0.63
PDLIM5-223ENST00000627587 CETPP11597 493 aa11.1□□□□□ -0.63
PDLIM5-223ENST00000627587 RXRAP19793 462 aa11.1□□□□□ -0.63
PDLIM5-223ENST00000627587 CDC27P30260 824 aa11.1□□□□□ -0.63
PDLIM5-223ENST00000627587 NFIAQ12857 509 aa11.1□□□□□ -0.63
PDLIM5-223ENST00000627587 SART3Q15020 963 aaKnown RBP11.1□□□□□ -0.63
PDLIM5-223ENST00000627587 CCL15Q16663 113 aa11.1□□□□□ -0.63
PDLIM5-223ENST00000627587 ERO1BQ86YB8 467 aa11.1□□□□□ -0.63
PDLIM5-223ENST00000627587 GBP4Q96PP9 640 aa11.1□□□□□ -0.63
PDLIM5-223ENST00000627587 TNKSO95271 1327 aa11.1□□□□□ -0.63
PDLIM5-223ENST00000627587 RBBP6Q7Z6E9 1792 aaKnown RBP11.1□□□□□ -0.63
PDLIM5-223ENST00000627587 ERICH2A1L162 156 aa11.1□□□□□ -0.63
PDLIM5-223ENST00000627587 PTPDC1A2A3K4 754 aa11.1□□□□□ -0.63
PDLIM5-223ENST00000627587 ZSCAN22P10073 491 aaPredicted RBP11.1□□□□□ -0.63
PDLIM5-223ENST00000627587 NTRK3Q16288 839 aa11.1□□□□□ -0.63
PDLIM5-223ENST00000627587 FAM47AQ5JRC9 791 aa11.1□□□□□ -0.63
PDLIM5-223ENST00000627587 RCSD1Q6JBY9 416 aa11.1□□□□□ -0.63
PDLIM5-223ENST00000627587 BRI3BPQ8WY22 251 aa11.1□□□□□ -0.63
PDLIM5-223ENST00000627587 ZSCAN10Q96SZ4 725 aaPredicted RBP11.1□□□□□ -0.63
PDLIM5-223ENST00000627587 SPDYE5A6NIY4 337 aa11.09□□□□□ -0.63
PDLIM5-223ENST00000627587 RANBP6O60518 1105 aaKnown RBP11.09□□□□□ -0.63
PDLIM5-223ENST00000627587 ADD1P35611 737 aaKnown RBP11.09□□□□□ -0.63
PDLIM5-223ENST00000627587 GABPAQ06546 454 aa11.09□□□□□ -0.63
PDLIM5-223ENST00000627587 PDE4BQ07343 736 aa11.09□□□□□ -0.63
PDLIM5-223ENST00000627587 VGLL4Q14135 290 aa11.09□□□□□ -0.63
PDLIM5-223ENST00000627587 HABP4Q5JVS0 413 aaKnown RBP11.09□□□□□ -0.63
PDLIM5-223ENST00000627587 DCAF15Q66K64 600 aa11.09□□□□□ -0.63
PDLIM5-223ENST00000627587 C16orf86Q6ZW13 317 aa11.09□□□□□ -0.63
PDLIM5-223ENST00000627587 MICU3Q86XE3 530 aa11.09□□□□□ -0.63
PDLIM5-223ENST00000627587 ZFPM1Q8IX07 1006 aa11.09□□□□□ -0.63
PDLIM5-223ENST00000627587 DDX11Q96FC9 970 aa11.09□□□□□ -0.63
PDLIM5-223ENST00000627587 ZNF333Q96JL9 665 aa11.09□□□□□ -0.63
PDLIM5-223ENST00000627587 TMEM39BQ9GZU3 492 aa11.09□□□□□ -0.63
PDLIM5-223ENST00000627587 IL17RBQ9NRM6 502 aa11.09□□□□□ -0.63
PDLIM5-223ENST00000627587 USP40Q9NVE5 1235 aa11.09□□□□□ -0.63
PDLIM5-223ENST00000627587 POLR3DP05423 398 aaPredicted RBP11.08□□□□□ -0.64
PDLIM5-223ENST00000627587 PDIA4P13667 645 aaKnown RBP11.08□□□□□ -0.64
PDLIM5-223ENST00000627587 RASA1P20936 1047 aa11.08□□□□□ -0.64
PDLIM5-223ENST00000627587 PDCP20941 246 aa11.08□□□□□ -0.64
PDLIM5-223ENST00000627587 NT5C2P49902 561 aa11.08□□□□□ -0.64
PDLIM5-223ENST00000627587 SNAPC2Q13487 334 aa11.08□□□□□ -0.64
PDLIM5-223ENST00000627587 WTAPQ15007 396 aa11.08□□□□□ -0.64
PDLIM5-223ENST00000627587 SLC9C1Q4G0N8 1177 aa11.08□□□□□ -0.64
PDLIM5-223ENST00000627587 LARP1BQ659C4 914 aaKnown RBP11.08□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 207.4 ms