RNA–Protein interactions for RNA: ENST00000621245.4

CPNE3-210, Transcript of copine 3, human

TSL 5

Gene CPNE3, Length 581 nt, Biotype protein coding, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPNE3-210	ENST00000621245	MYH4	Q9Y623	1939 aa		13.86	□□□□□ -0.19
CPNE3-210	ENST00000621245	MBD4	O95243	580 aa		13.86	□□□□□ -0.19
CPNE3-210	ENST00000621245	POLR3D	P05423	398 aa	Predicted RBP	13.86	□□□□□ -0.19
CPNE3-210	ENST00000621245	TTF1	Q15361	905 aa	Predicted RBP	13.86	□□□□□ -0.19
CPNE3-210	ENST00000621245	TSHZ3	Q63HK5	1081 aa		13.86	□□□□□ -0.19
CPNE3-210	ENST00000621245	GPR142	Q7Z601	462 aa		13.86	□□□□□ -0.19
CPNE3-210	ENST00000621245	ZNF579	Q8NAF0	562 aa	Known RBP	13.86	□□□□□ -0.19
CPNE3-210	ENST00000621245	GPRC5A	Q8NFJ5	357 aa		13.86	□□□□□ -0.19
CPNE3-210	ENST00000621245	CRNKL1	Q9BZJ0	848 aa	Known RBP	13.86	□□□□□ -0.19
CPNE3-210	ENST00000621245	KIAA1683	Q9H0B3	1180 aa		13.86	□□□□□ -0.19
CPNE3-210	ENST00000621245	PRO3102	Q9H379	93 aa		13.86	□□□□□ -0.19
CPNE3-210	ENST00000621245	MCM9	Q9NXL9	1143 aa		13.86	□□□□□ -0.19
CPNE3-210	ENST00000621245	RBM27	Q9P2N5	1060 aa	Known RBP	13.86	□□□□□ -0.19
CPNE3-210	ENST00000621245	PLXNA1	Q9UIW2	1896 aa		13.86	□□□□□ -0.19
CPNE3-210	ENST00000621245	EYS	Q5T1H1	3165 aa		13.86	□□□□□ -0.19
CPNE3-210	ENST00000621245	RAB11FIP3	O75154	756 aa		13.85	□□□□□ -0.19
CPNE3-210	ENST00000621245	HMMR	O75330	724 aa		13.85	□□□□□ -0.19
CPNE3-210	ENST00000621245	MS4A1	P11836	297 aa		13.85	□□□□□ -0.19
CPNE3-210	ENST00000621245	PRKAR2A	P13861	404 aa	Known RBP	13.85	□□□□□ -0.19
CPNE3-210	ENST00000621245	ATP5J	P18859	108 aa		13.85	□□□□□ -0.19
CPNE3-210	ENST00000621245	CCND3	P30281	292 aa	Predicted RBP	13.85	□□□□□ -0.19
CPNE3-210	ENST00000621245	MORN1	Q5T089	497 aa		13.85	□□□□□ -0.19
CPNE3-210	ENST00000621245	MAP3K21	Q5TCX8	1036 aa		13.85	□□□□□ -0.19
CPNE3-210	ENST00000621245	TTC6	Q86TZ1	520 aa		13.85	□□□□□ -0.19
CPNE3-210	ENST00000621245	CERS3	Q8IU89	383 aa		13.85	□□□□□ -0.19
CPNE3-210	ENST00000621245	HAUS7	Q99871	368 aa		13.85	□□□□□ -0.19
CPNE3-210	ENST00000621245	RPAP3	Q9H6T3	665 aa	Predicted RBP	13.85	□□□□□ -0.19
CPNE3-210	ENST00000621245	WDR70	Q9NW82	654 aa		13.85	□□□□□ -0.19
CPNE3-210	ENST00000621245	FLRT1	Q9NZU1	646 aa		13.85	□□□□□ -0.19
CPNE3-210	ENST00000621245	SPDYE16	A6NNV3	312 aa	Predicted RBP	13.84	□□□□□ -0.19
CPNE3-210	ENST00000621245	USP17L15	C9J2P7	530 aa		13.84	□□□□□ -0.19
CPNE3-210	ENST00000621245	USP17L13	C9JLJ4	530 aa		13.84	□□□□□ -0.19
CPNE3-210	ENST00000621245	USP17L11	C9JVI0	530 aa		13.84	□□□□□ -0.19
CPNE3-210	ENST00000621245	USP17L18	D6R9N7	530 aa		13.84	□□□□□ -0.19
CPNE3-210	ENST00000621245	USP17L22	D6RA61	530 aa		13.84	□□□□□ -0.19
CPNE3-210	ENST00000621245	USP17L17	D6RBQ6	530 aa		13.84	□□□□□ -0.19
CPNE3-210	ENST00000621245	USP17L19	D6RCP7	530 aa		13.84	□□□□□ -0.19
CPNE3-210	ENST00000621245	USP17L20	D6RJB6	530 aa		13.84	□□□□□ -0.19
CPNE3-210	ENST00000621245	MPHOSPH10	O00566	681 aa	Known RBP	13.84	□□□□□ -0.19
CPNE3-210	ENST00000621245	AKR1B1	P15121	316 aa		13.84	□□□□□ -0.19
CPNE3-210	ENST00000621245	USP17L24	Q0WX57	530 aa		13.84	□□□□□ -0.19
CPNE3-210	ENST00000621245	CATSPERG	Q6ZRH7	1159 aa		13.84	□□□□□ -0.19
CPNE3-210	ENST00000621245	SIAH1	Q8IUQ4	282 aa		13.84	□□□□□ -0.19
CPNE3-210	ENST00000621245	CDH23	Q9H251	3354 aa		13.83	□□□□□ -0.2
CPNE3-210	ENST00000621245	CACNB2	Q08289	660 aa	Predicted RBP	13.83	□□□□□ -0.2
CPNE3-210	ENST00000621245	PLEKHH3	Q7Z736	793 aa		13.83	□□□□□ -0.2
CPNE3-210	ENST00000621245	NUDT12	Q9BQG2	462 aa		13.83	□□□□□ -0.2
CPNE3-210	ENST00000621245	HTATIP2	Q9BUP3	242 aa		13.83	□□□□□ -0.2
CPNE3-210	ENST00000621245	PUS7L	Q9H0K6	701 aa	Known RBP	13.83	□□□□□ -0.2
CPNE3-210	ENST00000621245	RPTOR	Q8N122	1335 aa		13.83	□□□□□ -0.2
CPNE3-210	ENST00000621245	ZKSCAN1	P17029	563 aa	Predicted RBP	13.82	□□□□□ -0.2
CPNE3-210	ENST00000621245	MAPK4	P31152	587 aa		13.82	□□□□□ -0.2
CPNE3-210	ENST00000621245	TMED8	Q6PL24	325 aa	Predicted RBP	13.82	□□□□□ -0.2
CPNE3-210	ENST00000621245	SOCS4	Q8WXH5	440 aa		13.82	□□□□□ -0.2
CPNE3-210	ENST00000621245	LRRCC1	Q9C099	1032 aa		13.82	□□□□□ -0.2
CPNE3-210	ENST00000621245	HMX1	Q9NP08	348 aa	Predicted RBP	13.82	□□□□□ -0.2
CPNE3-210	ENST00000621245	RABGAP1	Q9Y3P9	1069 aa		13.82	□□□□□ -0.2
CPNE3-210	ENST00000621245	PFAS	O15067	1338 aa		13.82	□□□□□ -0.2
CPNE3-210	ENST00000621245	UNC80	Q8N2C7	3258 aa		13.82	□□□□□ -0.2
CPNE3-210	ENST00000621245		A0A0C4DFX4	3053 aa		13.82	□□□□□ -0.2
CPNE3-210	ENST00000621245	USP14	P54578	494 aa		13.81	□□□□□ -0.2
CPNE3-210	ENST00000621245	PDE3A	Q14432	1141 aa		13.81	□□□□□ -0.2
CPNE3-210	ENST00000621245	NPLOC4	Q8TAT6	608 aa		13.81	□□□□□ -0.2
CPNE3-210	ENST00000621245	APBA2	Q99767	749 aa		13.81	□□□□□ -0.2
CPNE3-210	ENST00000621245	CABP5	Q9NP86	173 aa		13.81	□□□□□ -0.2
CPNE3-210	ENST00000621245	OGDHL	Q9ULD0	1010 aa		13.81	□□□□□ -0.2
CPNE3-210	ENST00000621245	SMCHD1	A6NHR9	2005 aa		13.81	□□□□□ -0.2
CPNE3-210	ENST00000621245	LTBP2	Q14767	1821 aa		13.8	□□□□□ -0.2
CPNE3-210	ENST00000621245	USP17L12	C9JPN9	530 aa		13.8	□□□□□ -0.2
CPNE3-210	ENST00000621245	USP17L21	D6R901	530 aa		13.8	□□□□□ -0.2
CPNE3-210	ENST00000621245	EVI5	O60447	810 aa		13.8	□□□□□ -0.2
CPNE3-210	ENST00000621245	XRCC5	P13010	732 aa	Known RBP	13.8	□□□□□ -0.2
CPNE3-210	ENST00000621245	RGS2	P41220	211 aa		13.8	□□□□□ -0.2
CPNE3-210	ENST00000621245	CDK8	P49336	464 aa		13.8	□□□□□ -0.2
CPNE3-210	ENST00000621245	MAP2K5	Q13163	448 aa		13.8	□□□□□ -0.2
CPNE3-210	ENST00000621245	C12orf60	Q5U649	245 aa		13.8	□□□□□ -0.2
CPNE3-210	ENST00000621245	WDR78	Q5VTH9	848 aa		13.8	□□□□□ -0.2
CPNE3-210	ENST00000621245	LHX8	Q68G74	356 aa		13.8	□□□□□ -0.2
CPNE3-210	ENST00000621245	LBX2	Q6XYB7	198 aa		13.8	□□□□□ -0.2
CPNE3-210	ENST00000621245	NECAB2	Q7Z6G3	386 aa		13.8	□□□□□ -0.2
CPNE3-210	ENST00000621245	C7orf61	Q8IZ16	206 aa		13.8	□□□□□ -0.2
CPNE3-210	ENST00000621245	SPICE1	Q8N0Z3	855 aa		13.8	□□□□□ -0.2
CPNE3-210	ENST00000621245	TRPV1	Q8NER1	839 aa		13.8	□□□□□ -0.2
CPNE3-210	ENST00000621245	OTUD7A	Q8TE49	926 aa	Predicted RBP	13.8	□□□□□ -0.2
CPNE3-210	ENST00000621245	ZMYND8	Q9ULU4	1186 aa	Predicted RBP	13.8	□□□□□ -0.2
CPNE3-210	ENST00000621245	SOX1	O00570	391 aa	Predicted RBP	13.79	□□□□□ -0.2
CPNE3-210	ENST00000621245	PTPRE	P23469	700 aa		13.79	□□□□□ -0.2
CPNE3-210	ENST00000621245	GRB14	Q14449	540 aa		13.79	□□□□□ -0.2
CPNE3-210	ENST00000621245	UBE3C	Q15386	1083 aa		13.79	□□□□□ -0.2
CPNE3-210	ENST00000621245	TMEM179	Q6ZVK1	233 aa		13.79	□□□□□ -0.2
CPNE3-210	ENST00000621245	STK11IP	Q8N1F8	1099 aa		13.79	□□□□□ -0.2
CPNE3-210	ENST00000621245	GTF3C2	Q8WUA4	911 aa	Predicted RBP	13.79	□□□□□ -0.2
CPNE3-210	ENST00000621245	GNL3	Q9BVP2	549 aa	Known RBP eCLIP	13.79	□□□□□ -0.2
CPNE3-210	ENST00000621245	MOV10L1	Q9BXT6	1211 aa	Known RBP	13.79	□□□□□ -0.2
CPNE3-210	ENST00000621245	TANGO6	Q9C0B7	1094 aa		13.79	□□□□□ -0.2
CPNE3-210	ENST00000621245	STAP2	Q9UGK3	403 aa		13.79	□□□□□ -0.2
CPNE3-210	ENST00000621245	SLC4A4	Q9Y6R1	1079 aa		13.79	□□□□□ -0.2
CPNE3-210	ENST00000621245	MCM3AP	O60318	1980 aa		13.79	□□□□□ -0.2
CPNE3-210	ENST00000621245	IGHA2	P01877	340 aa		13.78	□□□□□ -0.2
CPNE3-210	ENST00000621245	SYN1	P17600	705 aa		13.78	□□□□□ -0.2

Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms