RNA–Protein interactions for RNA: ENST00000618469.1

BRCA1-228, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 718 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-228ENST00000618469 PDE4AP27815 886 aa19.08■□□□□ 0.64
BRCA1-228ENST00000618469 FLT3LGP49771 235 aa19.08■□□□□ 0.64
BRCA1-228ENST00000618469 ICA1Q05084 483 aa19.08■□□□□ 0.64
BRCA1-228ENST00000618469 NMIQ13287 307 aaPredicted RBP19.08■□□□□ 0.64
BRCA1-228ENST00000618469 SLAIN1Q8ND83 568 aa19.08■□□□□ 0.64
BRCA1-228ENST00000618469 DIS3LQ8TF46 1054 aaKnown RBP19.08■□□□□ 0.64
BRCA1-228ENST00000618469 C12orf42Q96LP6 360 aa19.08■□□□□ 0.64
BRCA1-228ENST00000618469 CCDC17Q96LX7 622 aa19.08■□□□□ 0.64
BRCA1-228ENST00000618469 HELLSQ9NRZ9 838 aa19.08■□□□□ 0.64
BRCA1-228ENST00000618469 VCAM1P19320 739 aa19.07■□□□□ 0.64
BRCA1-228ENST00000618469 FAM110CQ1W6H9 321 aa19.07■□□□□ 0.64
BRCA1-228ENST00000618469 Q7L0L9 218 aa19.07■□□□□ 0.64
BRCA1-228ENST00000618469 PAWRQ96IZ0 340 aaKnown RBP19.07■□□□□ 0.64
BRCA1-228ENST00000618469 LAMA3Q16787 3333 aa19.06■□□□□ 0.64
BRCA1-228ENST00000618469 A0A0C4DFX4 3053 aa19.06■□□□□ 0.64
BRCA1-228ENST00000618469 A0A1W2PRG0 241 aa19.06■□□□□ 0.64
BRCA1-228ENST00000618469 FOXP2O15409 715 aa19.06■□□□□ 0.64
BRCA1-228ENST00000618469 RASA1P20936 1047 aa19.06■□□□□ 0.64
BRCA1-228ENST00000618469 HOXA7P31268 230 aaPredicted RBP19.06■□□□□ 0.64
BRCA1-228ENST00000618469 GCLCP48506 637 aaPredicted RBP19.06■□□□□ 0.64
BRCA1-228ENST00000618469 VPS53Q5VIR6 699 aa19.06■□□□□ 0.64
BRCA1-228ENST00000618469 TICAM2Q86XR7 235 aa19.06■□□□□ 0.64
BRCA1-228ENST00000618469 MKNK2Q9HBH9 465 aa19.06■□□□□ 0.64
BRCA1-228ENST00000618469 ARHGEF10LQ9HCE6 1279 aa19.06■□□□□ 0.64
BRCA1-228ENST00000618469 ZMYND8Q9ULU4 1186 aaPredicted RBP19.06■□□□□ 0.64
BRCA1-228ENST00000618469 PRDM1O75626 825 aa19.05■□□□□ 0.64
BRCA1-228ENST00000618469 HERVK_113P62684 666 aa19.05■□□□□ 0.64
BRCA1-228ENST00000618469 MCMDC2Q4G0Z9 681 aa19.05■□□□□ 0.64
BRCA1-228ENST00000618469 ZNF589Q86UQ0 364 aaPredicted RBP19.05■□□□□ 0.64
BRCA1-228ENST00000618469 C7orf61Q8IZ16 206 aa19.05■□□□□ 0.64
BRCA1-228ENST00000618469 SH2D4AQ9H788 454 aa19.05■□□□□ 0.64
BRCA1-228ENST00000618469 CCDC171Q6TFL3 1326 aa19.04■□□□□ 0.64
BRCA1-228ENST00000618469 TNPO2O14787 897 aaKnown RBP19.04■□□□□ 0.64
BRCA1-228ENST00000618469 SDSP20132 328 aa19.04■□□□□ 0.64
BRCA1-228ENST00000618469 ATP2B2Q01814 1243 aa19.04■□□□□ 0.64
BRCA1-228ENST00000618469 PPARAQ07869 468 aa19.04■□□□□ 0.64
BRCA1-228ENST00000618469 P2RX7Q99572 595 aaKnown RBP19.04■□□□□ 0.64
BRCA1-228ENST00000618469 DIAPH3Q9NSV4 1193 aa19.04■□□□□ 0.64
BRCA1-228ENST00000618469 USP17L15C9J2P7 530 aa19.03■□□□□ 0.64
BRCA1-228ENST00000618469 USP17L13C9JLJ4 530 aa19.03■□□□□ 0.64
BRCA1-228ENST00000618469 USP17L11C9JVI0 530 aa19.03■□□□□ 0.64
BRCA1-228ENST00000618469 USP17L18D6R9N7 530 aa19.03■□□□□ 0.64
BRCA1-228ENST00000618469 USP17L22D6RA61 530 aa19.03■□□□□ 0.64
BRCA1-228ENST00000618469 USP17L17D6RBQ6 530 aa19.03■□□□□ 0.64
BRCA1-228ENST00000618469 USP17L19D6RCP7 530 aa19.03■□□□□ 0.64
BRCA1-228ENST00000618469 USP17L20D6RJB6 530 aa19.03■□□□□ 0.64
BRCA1-228ENST00000618469 SLC3A2P08195 630 aaKnown RBP19.03■□□□□ 0.64
BRCA1-228ENST00000618469 SYN1P17600 705 aa19.03■□□□□ 0.64
BRCA1-228ENST00000618469 USP17L24Q0WX57 530 aa19.03■□□□□ 0.64
BRCA1-228ENST00000618469 TTC22Q5TAA0 569 aa19.03■□□□□ 0.64
BRCA1-228ENST00000618469 RPAP3Q9H6T3 665 aaPredicted RBP19.03■□□□□ 0.64
BRCA1-228ENST00000618469 KANSL2Q9H9L4 492 aa19.03■□□□□ 0.64
BRCA1-228ENST00000618469 ZNF287Q9HBT7 754 aa19.03■□□□□ 0.64
BRCA1-228ENST00000618469 MYH4Q9Y623 1939 aa19.03■□□□□ 0.64
BRCA1-228ENST00000618469 A0A0G2JMZ2 1700 aa19.03■□□□□ 0.64
BRCA1-228ENST00000618469 LAMA4Q16363 1823 aa19.02■□□□□ 0.64
BRCA1-228ENST00000618469 PEX10O60683 326 aa19.02■□□□□ 0.64
BRCA1-228ENST00000618469 EEF2P13639 858 aaKnown RBP19.02■□□□□ 0.64
BRCA1-228ENST00000618469 GSPT1P15170 499 aaKnown RBP19.02■□□□□ 0.64
BRCA1-228ENST00000618469 PDE4BQ07343 736 aa19.02■□□□□ 0.64
BRCA1-228ENST00000618469 GTF3C2Q8WUA4 911 aaPredicted RBP19.02■□□□□ 0.64
BRCA1-228ENST00000618469 PAGR1Q9BTK6 254 aa19.02■□□□□ 0.64
BRCA1-228ENST00000618469 TANGO6Q9C0B7 1094 aa19.02■□□□□ 0.64
BRCA1-228ENST00000618469 PARP14Q460N5 1801 aa19.02■□□□□ 0.63
BRCA1-228ENST00000618469 CWC27Q6UX04 472 aaKnown RBP19.01■□□□□ 0.63
BRCA1-228ENST00000618469 CATSPERGQ6ZRH7 1159 aa19.01■□□□□ 0.63
BRCA1-228ENST00000618469 SIAH1Q8IUQ4 282 aa19.01■□□□□ 0.63
BRCA1-228ENST00000618469 SPICE1Q8N0Z3 855 aa19.01■□□□□ 0.63
BRCA1-228ENST00000618469 DEFB123Q8N688 67 aa19.01■□□□□ 0.63
BRCA1-228ENST00000618469 GNL3Q9BVP2 549 aaKnown RBP eCLIP19.01■□□□□ 0.63
BRCA1-228ENST00000618469 VCPKMTQ9H867 229 aa19.01■□□□□ 0.63
BRCA1-228ENST00000618469 TXNRD2Q9NNW7 524 aa19.01■□□□□ 0.63
BRCA1-228ENST00000618469 MORF4L1Q9UBU8 362 aa19.01■□□□□ 0.63
BRCA1-228ENST00000618469 TMX2Q9Y320 296 aa19.01■□□□□ 0.63
BRCA1-228ENST00000618469 PLIN4Q96Q06 1357 aa19.01■□□□□ 0.63
BRCA1-228ENST00000618469 A0A1W2PPC1 479 aa19■□□□□ 0.63
BRCA1-228ENST00000618469 HIP1O00291 1037 aa19■□□□□ 0.63
BRCA1-228ENST00000618469 HSPD1P10809 573 aaKnown RBP19■□□□□ 0.63
BRCA1-228ENST00000618469 MFAP1P55081 439 aaKnown RBP19■□□□□ 0.63
BRCA1-228ENST00000618469 CTDSPL2Q05D32 466 aa19■□□□□ 0.63
BRCA1-228ENST00000618469 TRIM32Q13049 653 aa19■□□□□ 0.63
BRCA1-228ENST00000618469 KIAA1755Q5JYT7 1200 aa19■□□□□ 0.63
BRCA1-228ENST00000618469 ZNF444Q8N0Y2 327 aaPredicted RBP19■□□□□ 0.63
BRCA1-228ENST00000618469 LPAR1Q92633 364 aa19■□□□□ 0.63
BRCA1-228ENST00000618469 PAK6Q9NQU5 681 aaPredicted RBP19■□□□□ 0.63
BRCA1-228ENST00000618469 ZMYM6O95789 1325 aa19■□□□□ 0.63
BRCA1-228ENST00000618469 RAD21O60216 631 aa18.99■□□□□ 0.63
BRCA1-228ENST00000618469 GPRC5AQ8NFJ5 357 aa18.99■□□□□ 0.63
BRCA1-228ENST00000618469 COA7Q96BR5 231 aa18.99■□□□□ 0.63
BRCA1-228ENST00000618469 RLFQ13129 1914 aa18.99■□□□□ 0.63
BRCA1-228ENST00000618469 SPDYE16A6NNV3 312 aaPredicted RBP18.98■□□□□ 0.63
BRCA1-228ENST00000618469 WDR46O15213 610 aaKnown RBP18.98■□□□□ 0.63
BRCA1-228ENST00000618469 TSPY3P0CV98 308 aa18.98■□□□□ 0.63
BRCA1-228ENST00000618469 TSPY8P0CW00 308 aa18.98■□□□□ 0.63
BRCA1-228ENST00000618469 ERVK-9P63128 1117 aa18.98■□□□□ 0.63
BRCA1-228ENST00000618469 ERVK-24P63145 666 aa18.98■□□□□ 0.63
BRCA1-228ENST00000618469 ALX1Q15699 326 aa18.98■□□□□ 0.63
BRCA1-228ENST00000618469 FAM47AQ5JRC9 791 aa18.98■□□□□ 0.63
BRCA1-228ENST00000618469 NECAB2Q7Z6G3 386 aa18.98■□□□□ 0.63
BRCA1-228ENST00000618469 PXYLP1Q8TE99 480 aa18.98■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms