RNA–Protein interactions for RNA: ENST00000614932.1

VPS39-214, Transcript of VPS39, HOPS complex subunit, humanhuman

Gene VPS39, Length 2,835 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-214ENST00000614932 STIM1Q13586 685 aa11.48□□□□□ -0.57
VPS39-214ENST00000614932 TUBB2AQ13885 445 aa11.48□□□□□ -0.57
VPS39-214ENST00000614932 LARP1BQ659C4 914 aaKnown RBP11.48□□□□□ -0.57
VPS39-214ENST00000614932 FUKQ8N0W3 1084 aa11.48□□□□□ -0.57
VPS39-214ENST00000614932 BICD1Q96G01 975 aa11.48□□□□□ -0.57
VPS39-214ENST00000614932 PGBD1Q96JS3 809 aa11.48□□□□□ -0.57
VPS39-214ENST00000614932 TUBB2BQ9BVA1 445 aa11.48□□□□□ -0.57
VPS39-214ENST00000614932 LRRC2Q9BYS8 371 aa11.48□□□□□ -0.57
VPS39-214ENST00000614932 TMEM165Q9HC07 324 aa11.48□□□□□ -0.57
VPS39-214ENST00000614932 PAPOLBQ9NRJ5 636 aaKnown RBP11.48□□□□□ -0.57
VPS39-214ENST00000614932 CRYBG1Q9Y4K1 1723 aa11.48□□□□□ -0.57
VPS39-214ENST00000614932 WDR93Q6P2C0 686 aa11.48□□□□□ -0.57
VPS39-214ENST00000614932 SDCCAG8Q86SQ7 713 aaPredicted RBP11.48□□□□□ -0.57
VPS39-214ENST00000614932 YIPF2Q9BWQ6 316 aa11.48□□□□□ -0.57
VPS39-214ENST00000614932 ADAMTS7Q9UKP4 1686 aa11.47□□□□□ -0.57
VPS39-214ENST00000614932 NUTM2BA6NNL0 878 aaPredicted RBP11.47□□□□□ -0.57
VPS39-214ENST00000614932 NUTM2EB1AL46 878 aaPredicted RBP11.47□□□□□ -0.57
VPS39-214ENST00000614932 SLC27A2O14975 620 aa11.47□□□□□ -0.57
VPS39-214ENST00000614932 ZBED6P86452 979 aa11.47□□□□□ -0.57
VPS39-214ENST00000614932 HLFQ16534 295 aa11.47□□□□□ -0.57
VPS39-214ENST00000614932 LRRC23Q53EV4 343 aaPredicted RBP11.47□□□□□ -0.57
VPS39-214ENST00000614932 MFSD4BQ5TF39 518 aa11.47□□□□□ -0.57
VPS39-214ENST00000614932 NUTM2AQ8IVF1 878 aaPredicted RBP11.47□□□□□ -0.57
VPS39-214ENST00000614932 RIN2Q8WYP3 895 aaPredicted RBP11.47□□□□□ -0.57
VPS39-214ENST00000614932 ACSBG1Q96GR2 724 aa11.47□□□□□ -0.57
VPS39-214ENST00000614932 ACTR5Q9H9F9 607 aaPredicted RBP11.47□□□□□ -0.57
VPS39-214ENST00000614932 ZC3H4Q9UPT8 1303 aaKnown RBP11.47□□□□□ -0.57
VPS39-214ENST00000614932 OPA1O60313 960 aa11.47□□□□□ -0.57
VPS39-214ENST00000614932 SSBP05455 408 aaKnown RBP eCLIP11.47□□□□□ -0.57
VPS39-214ENST00000614932 ZKSCAN1P17029 563 aaPredicted RBP11.47□□□□□ -0.57
VPS39-214ENST00000614932 GGCXP38435 758 aa11.47□□□□□ -0.57
VPS39-214ENST00000614932 NECTIN1Q15223 517 aa11.47□□□□□ -0.57
VPS39-214ENST00000614932 RABL6Q3YEC7 729 aaPredicted RBP11.47□□□□□ -0.57
VPS39-214ENST00000614932 MMADHCQ9H3L0 296 aaPredicted RBP11.47□□□□□ -0.57
VPS39-214ENST00000614932 CYP46A1Q9Y6A2 500 aa11.47□□□□□ -0.57
VPS39-214ENST00000614932 A0A0G2JLW4 131 aa11.46□□□□□ -0.57
VPS39-214ENST00000614932 PAX3P23760 479 aa11.46□□□□□ -0.57
VPS39-214ENST00000614932 SLMAPQ14BN4 828 aa11.46□□□□□ -0.57
VPS39-214ENST00000614932 ACCSLQ4AC99 568 aa11.46□□□□□ -0.57
VPS39-214ENST00000614932 MTHFD1LQ6UB35 978 aa11.46□□□□□ -0.57
VPS39-214ENST00000614932 CDC37L1Q7L3B6 337 aa11.46□□□□□ -0.57
VPS39-214ENST00000614932 RASSF8Q8NHQ8 419 aa11.46□□□□□ -0.57
VPS39-214ENST00000614932 SMARCC2Q8TAQ2 1214 aa11.46□□□□□ -0.57
VPS39-214ENST00000614932 NSMCE1Q8WV22 266 aa11.46□□□□□ -0.57
VPS39-214ENST00000614932 RBM17Q96I25 401 aaKnown RBP11.46□□□□□ -0.57
VPS39-214ENST00000614932 SH3GL2Q99962 352 aa11.46□□□□□ -0.57
VPS39-214ENST00000614932 STRCQ7RTU9 1775 aa11.46□□□□□ -0.57
VPS39-214ENST00000614932 BIN1O00499 593 aa11.46□□□□□ -0.58
VPS39-214ENST00000614932 LIN7AO14910 233 aaPredicted RBP11.46□□□□□ -0.58
VPS39-214ENST00000614932 RNF8O76064 485 aa11.46□□□□□ -0.58
VPS39-214ENST00000614932 FKBP4Q02790 459 aaKnown RBP eCLIP11.46□□□□□ -0.58
VPS39-214ENST00000614932 ME3Q16798 604 aa11.46□□□□□ -0.58
VPS39-214ENST00000614932 ACBD5Q5T8D3 534 aaPredicted RBP11.46□□□□□ -0.58
VPS39-214ENST00000614932 ATG9AQ7Z3C6 839 aa11.46□□□□□ -0.58
VPS39-214ENST00000614932 RBM41Q96IZ5 413 aaKnown RBP11.46□□□□□ -0.58
VPS39-214ENST00000614932 ZSCAN31Q96LW9 406 aaPredicted RBP11.46□□□□□ -0.58
VPS39-214ENST00000614932 EBF2Q9HAK2 575 aa11.46□□□□□ -0.58
VPS39-214ENST00000614932 HOOK1Q9UJC3 728 aaKnown RBP11.46□□□□□ -0.58
VPS39-214ENST00000614932 PDCP20941 246 aa11.45□□□□□ -0.58
VPS39-214ENST00000614932 COG1Q8WTW3 980 aa11.45□□□□□ -0.58
VPS39-214ENST00000614932 MAP4K1Q92918 833 aa11.45□□□□□ -0.58
VPS39-214ENST00000614932 TSC22D3Q99576 134 aa11.45□□□□□ -0.58
VPS39-214ENST00000614932 GGA2Q9UJY4 613 aa11.45□□□□□ -0.58
VPS39-214ENST00000614932 COL15A1P39059 1388 aa11.45□□□□□ -0.58
VPS39-214ENST00000614932 AFDNP55196 1824 aaKnown RBP11.45□□□□□ -0.58
VPS39-214ENST00000614932 FOSBP53539 338 aa11.45□□□□□ -0.58
VPS39-214ENST00000614932 SFSWAPQ12872 951 aaKnown RBP11.45□□□□□ -0.58
VPS39-214ENST00000614932 CCDC170Q8IYT3 715 aa11.45□□□□□ -0.58
VPS39-214ENST00000614932 ATL2Q8NHH9 583 aa11.45□□□□□ -0.58
VPS39-214ENST00000614932 ZFAND2BQ8WV99 257 aa11.45□□□□□ -0.58
VPS39-214ENST00000614932 GORASP1Q9BQQ3 440 aa11.45□□□□□ -0.58
VPS39-214ENST00000614932 TRIM4Q9C037 500 aa11.45□□□□□ -0.58
VPS39-214ENST00000614932 SH2B1Q9NRF2 756 aaPredicted RBP11.45□□□□□ -0.58
VPS39-214ENST00000614932 MRC1P22897 1456 aa11.45□□□□□ -0.58
VPS39-214ENST00000614932 GNAT1P11488 350 aa11.45□□□□□ -0.58
VPS39-214ENST00000614932 ADORA1P30542 326 aa11.45□□□□□ -0.58
VPS39-214ENST00000614932 SLC4A9Q96Q91 983 aa11.45□□□□□ -0.58
VPS39-214ENST00000614932 SUN2Q9UH99 717 aa11.45□□□□□ -0.58
VPS39-214ENST00000614932 RIPOR2Q9Y4F9 1068 aa11.45□□□□□ -0.58
VPS39-214ENST00000614932 A0A087WWV3 80 aa11.44□□□□□ -0.58
VPS39-214ENST00000614932 CTAGE15A4D2H0 777 aa11.44□□□□□ -0.58
VPS39-214ENST00000614932 BUB1BO60566 1050 aaPredicted RBP11.44□□□□□ -0.58
VPS39-214ENST00000614932 CTAGE8P0CG41 777 aa11.44□□□□□ -0.58
VPS39-214ENST00000614932 MCM3P25205 808 aa11.44□□□□□ -0.58
VPS39-214ENST00000614932 ST3GAL1Q11201 340 aa11.44□□□□□ -0.58
VPS39-214ENST00000614932 NKX1-1Q15270 411 aaPredicted RBP11.44□□□□□ -0.58
VPS39-214ENST00000614932 PI16Q6UXB8 463 aa11.44□□□□□ -0.58
VPS39-214ENST00000614932 CTAGE6Q86UF2 777 aa11.44□□□□□ -0.58
VPS39-214ENST00000614932 CTAGE4Q8IX94 777 aa11.44□□□□□ -0.58
VPS39-214ENST00000614932 GOLGA6BA6NDN3 693 aa11.44□□□□□ -0.58
VPS39-214ENST00000614932 GOLGA6L10A6NI86 522 aa11.44□□□□□ -0.58
VPS39-214ENST00000614932 TAF5LO75529 589 aa11.44□□□□□ -0.58
VPS39-214ENST00000614932 KIF4AO95239 1232 aa11.44□□□□□ -0.58
VPS39-214ENST00000614932 LINGO3P0C6S8 592 aa11.44□□□□□ -0.58
VPS39-214ENST00000614932 SKOR1P84550 965 aa11.44□□□□□ -0.58
VPS39-214ENST00000614932 CCDC57Q2TAC2 916 aa11.44□□□□□ -0.58
VPS39-214ENST00000614932 KIF6Q6ZMV9 814 aa11.44□□□□□ -0.58
VPS39-214ENST00000614932 CHST3Q7LGC8 479 aa11.44□□□□□ -0.58
VPS39-214ENST00000614932 TMEM139Q8IV31 216 aa11.44□□□□□ -0.58
VPS39-214ENST00000614932 MIPOL1Q8TD10 442 aa11.44□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms