RNA–Protein interactions for RNA: ENST00000614678.1

CPNE3-208, Transcript of copine 3, humanhuman

TSL 1 (best)

Gene CPNE3, Length 4,201 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-208ENST00000614678 TOMM22Q9NS69 142 aa6.8□□□□□ -1.32
CPNE3-208ENST00000614678 PTPN22Q9Y2R2 807 aa6.8□□□□□ -1.32
CPNE3-208ENST00000614678 CCDC171Q6TFL3 1326 aa6.8□□□□□ -1.32
CPNE3-208ENST00000614678 SPDYE16A6NNV3 312 aaPredicted RBP6.8□□□□□ -1.32
CPNE3-208ENST00000614678 ALDH1A1P00352 501 aa6.8□□□□□ -1.32
CPNE3-208ENST00000614678 TANGO6Q9C0B7 1094 aa6.8□□□□□ -1.32
CPNE3-208ENST00000614678 RANBP6O60518 1105 aaKnown RBP6.8□□□□□ -1.32
CPNE3-208ENST00000614678 ZFYP08048 801 aaPredicted RBP6.8□□□□□ -1.32
CPNE3-208ENST00000614678 EN2P19622 333 aaPredicted RBP6.8□□□□□ -1.32
CPNE3-208ENST00000614678 SBK1Q52WX2 424 aa6.8□□□□□ -1.32
CPNE3-208ENST00000614678 OTUD7BQ6GQQ9 843 aa6.8□□□□□ -1.32
CPNE3-208ENST00000614678 STOX1Q6ZVD7 989 aa6.8□□□□□ -1.32
CPNE3-208ENST00000614678 CCDC136Q96JN2 1154 aa6.8□□□□□ -1.32
CPNE3-208ENST00000614678 ARPP21Q9UBL0 812 aaPredicted RBP6.8□□□□□ -1.32
CPNE3-208ENST00000614678 DDX52Q9Y2R4 599 aaKnown RBP eCLIP6.8□□□□□ -1.32
CPNE3-208ENST00000614678 RIPK3Q9Y572 518 aa6.8□□□□□ -1.32
CPNE3-208ENST00000614678 PARP14Q460N5 1801 aa6.8□□□□□ -1.32
CPNE3-208ENST00000614678 FLT3LGP49771 235 aa6.79□□□□□ -1.32
CPNE3-208ENST00000614678 TTBK2Q6IQ55 1244 aa6.79□□□□□ -1.32
CPNE3-208ENST00000614678 KCTD1Q719H9 257 aa6.79□□□□□ -1.32
CPNE3-208ENST00000614678 FASTKD5Q7L8L6 764 aaKnown RBP6.79□□□□□ -1.32
CPNE3-208ENST00000614678 CABP5Q9NP86 173 aa6.79□□□□□ -1.32
CPNE3-208ENST00000614678 UNC80Q8N2C7 3258 aa6.79□□□□□ -1.32
CPNE3-208ENST00000614678 IGKV6D-41A0A0C4DH26 115 aa6.79□□□□□ -1.32
CPNE3-208ENST00000614678 CATSPERGQ6ZRH7 1159 aa6.79□□□□□ -1.32
CPNE3-208ENST00000614678 PURBQ96QR8 312 aaKnown RBP6.79□□□□□ -1.32
CPNE3-208ENST00000614678 KIAA1683Q9H0B3 1180 aa6.79□□□□□ -1.32
CPNE3-208ENST00000614678 DIAPH3Q9NSV4 1193 aa6.79□□□□□ -1.32
CPNE3-208ENST00000614678 FLRT1Q9NZU1 646 aa6.79□□□□□ -1.32
CPNE3-208ENST00000614678 XIRP2A4UGR9 3374 aa6.79□□□□□ -1.32
CPNE3-208ENST00000614678 B4E1Z4 1266 aa6.79□□□□□ -1.32
CPNE3-208ENST00000614678 NDUFB10O96000 172 aa6.79□□□□□ -1.32
CPNE3-208ENST00000614678 MCCP23508 829 aa6.79□□□□□ -1.32
CPNE3-208ENST00000614678 SLC16A2P36021 539 aa6.79□□□□□ -1.32
CPNE3-208ENST00000614678 IRX3P78415 501 aaPredicted RBP6.79□□□□□ -1.32
CPNE3-208ENST00000614678 WDR78Q5VTH9 848 aa6.79□□□□□ -1.32
CPNE3-208ENST00000614678 TMEM179Q6ZVK1 233 aa6.79□□□□□ -1.32
CPNE3-208ENST00000614678 PROCA1Q8NCQ7 364 aaPredicted RBP6.79□□□□□ -1.32
CPNE3-208ENST00000614678 PARK7Q99497 189 aaKnown RBP6.79□□□□□ -1.32
CPNE3-208ENST00000614678 HELLSQ9NRZ9 838 aa6.79□□□□□ -1.32
CPNE3-208ENST00000614678 STX8Q9UNK0 236 aa6.79□□□□□ -1.32
CPNE3-208ENST00000614678 TMX2Q9Y320 296 aa6.79□□□□□ -1.32
CPNE3-208ENST00000614678 F5H6K3 240 aa6.78□□□□□ -1.32
CPNE3-208ENST00000614678 GOLGA8HP0CJ92 632 aa6.78□□□□□ -1.32
CPNE3-208ENST00000614678 CYP2B6P20813 491 aa6.78□□□□□ -1.32
CPNE3-208ENST00000614678 KLRC3Q07444 240 aa6.78□□□□□ -1.32
CPNE3-208ENST00000614678 RAB11FIP4Q86YS3 637 aa6.78□□□□□ -1.32
CPNE3-208ENST00000614678 TCEANC2Q96MN5 208 aa6.78□□□□□ -1.32
CPNE3-208ENST00000614678 MTMR4Q9NYA4 1195 aa6.78□□□□□ -1.32
CPNE3-208ENST00000614678 TMOD4Q9NZQ9 345 aa6.78□□□□□ -1.32
CPNE3-208ENST00000614678 FRMPD2Q68DX3 1309 aaPredicted RBP6.78□□□□□ -1.32
CPNE3-208ENST00000614678 ROBO3Q96MS0 1386 aa6.78□□□□□ -1.32
CPNE3-208ENST00000614678 FLOT1O75955 427 aa6.78□□□□□ -1.32
CPNE3-208ENST00000614678 CYP21A2P08686 494 aa6.78□□□□□ -1.32
CPNE3-208ENST00000614678 PLS1Q14651 629 aa6.78□□□□□ -1.32
CPNE3-208ENST00000614678 TMEM132BQ14DG7 1078 aa6.78□□□□□ -1.32
CPNE3-208ENST00000614678 RCSD1Q6JBY9 416 aa6.78□□□□□ -1.32
CPNE3-208ENST00000614678 CYB5R4Q7L1T6 521 aa6.78□□□□□ -1.32
CPNE3-208ENST00000614678 AS3MTQ9HBK9 375 aa6.78□□□□□ -1.32
CPNE3-208ENST00000614678 GJD2Q9UKL4 321 aa6.78□□□□□ -1.32
CPNE3-208ENST00000614678 TSPY3P0CV98 308 aa6.78□□□□□ -1.32
CPNE3-208ENST00000614678 TSPY8P0CW00 308 aa6.78□□□□□ -1.32
CPNE3-208ENST00000614678 HOXA7P31268 230 aaPredicted RBP6.78□□□□□ -1.32
CPNE3-208ENST00000614678 IRX5P78411 483 aaPredicted RBP6.78□□□□□ -1.32
CPNE3-208ENST00000614678 ANO1Q5XXA6 986 aa6.78□□□□□ -1.32
CPNE3-208ENST00000614678 REM2Q8IYK8 340 aaPredicted RBP6.78□□□□□ -1.32
CPNE3-208ENST00000614678 SPTBN5Q9NRC6 3674 aaKnown RBP6.78□□□□□ -1.32
CPNE3-208ENST00000614678 KDM4AO75164 1064 aa6.77□□□□□ -1.32
CPNE3-208ENST00000614678 PGK2P07205 417 aa6.77□□□□□ -1.32
CPNE3-208ENST00000614678 CPA1P15085 419 aa6.77□□□□□ -1.32
CPNE3-208ENST00000614678 ERVK-9P63128 1117 aa6.77□□□□□ -1.32
CPNE3-208ENST00000614678 ERVK-24P63145 666 aa6.77□□□□□ -1.32
CPNE3-208ENST00000614678 AAMPQ13685 434 aa6.77□□□□□ -1.32
CPNE3-208ENST00000614678 FBXO46Q6PJ61 603 aaPredicted RBP6.77□□□□□ -1.32
CPNE3-208ENST00000614678 USP17L2Q6R6M4 530 aa6.77□□□□□ -1.32
CPNE3-208ENST00000614678 LRRC2Q9BYS8 371 aa6.77□□□□□ -1.32
CPNE3-208ENST00000614678 VCPKMTQ9H867 229 aa6.77□□□□□ -1.32
CPNE3-208ENST00000614678 MYPNQ86TC9 1320 aa6.77□□□□□ -1.32
CPNE3-208ENST00000614678 TSPY2A6NKD2 308 aa6.77□□□□□ -1.33
CPNE3-208ENST00000614678 TNPO2O14787 897 aaKnown RBP6.77□□□□□ -1.33
CPNE3-208ENST00000614678 ZNF444Q8N0Y2 327 aaPredicted RBP6.77□□□□□ -1.33
CPNE3-208ENST00000614678 CPXCR1Q8N123 301 aa6.77□□□□□ -1.33
CPNE3-208ENST00000614678 TRIB2Q92519 343 aa6.77□□□□□ -1.33
CPNE3-208ENST00000614678 SRRDQ9UH36 339 aa6.77□□□□□ -1.33
CPNE3-208ENST00000614678 SWAP70Q9UH65 585 aa6.77□□□□□ -1.33
CPNE3-208ENST00000614678 ISY1Q9ULR0 285 aaKnown RBP6.77□□□□□ -1.33
CPNE3-208ENST00000614678 PRAMEF19Q5SWL8 479 aa6.77□□□□□ -1.33
CPNE3-208ENST00000614678 NPLOC4Q8TAT6 608 aa6.77□□□□□ -1.33
CPNE3-208ENST00000614678 KIFC2Q96AC6 838 aa6.77□□□□□ -1.33
CPNE3-208ENST00000614678 ERO1AQ96HE7 468 aa6.77□□□□□ -1.33
CPNE3-208ENST00000614678 DDRGK1Q96HY6 314 aa6.77□□□□□ -1.33
CPNE3-208ENST00000614678 ZSWIM5Q9P217 1185 aa6.77□□□□□ -1.33
CPNE3-208ENST00000614678 C19orf81C9J6K1 198 aa6.77□□□□□ -1.33
CPNE3-208ENST00000614678 GNAT2P19087 354 aa6.77□□□□□ -1.33
CPNE3-208ENST00000614678 LENG1Q96BZ8 264 aaPredicted RBP6.77□□□□□ -1.33
CPNE3-208ENST00000614678 C12orf42Q96LP6 360 aa6.77□□□□□ -1.33
CPNE3-208ENST00000614678 MOV10L1Q9BXT6 1211 aaKnown RBP6.77□□□□□ -1.33
CPNE3-208ENST00000614678 UNC93B1Q9H1C4 597 aa6.77□□□□□ -1.33
CPNE3-208ENST00000614678 HOMER2Q9NSB8 354 aa6.77□□□□□ -1.33
CPNE3-208ENST00000614678 SGSM2O43147 1006 aa6.76□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 58.6 ms