RNA–Protein interactions for RNA: ENST00000613421.4

GGA3-220, Transcript of golgi associated, gamma adaptin ear containing, ARF binding protein 3, humanhuman

TSL 2

Gene GGA3, Length 5,156 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GGA3-220ENST00000613421 SYMPKQ92797 1274 aaKnown RBP15.35■□□□□ 0.05
GGA3-220ENST00000613421 NSRP1Q9H0G5 558 aaKnown RBP15.35■□□□□ 0.05
GGA3-220ENST00000613421 TBC1D7Q9P0N9 293 aa15.35■□□□□ 0.05
GGA3-220ENST00000613421 IKBKGQ9Y6K9 419 aa15.35■□□□□ 0.05
GGA3-220ENST00000613421 GPKOWQ92917 476 aaPredicted RBP eCLIP15.35■□□□□ 0.05
GGA3-220ENST00000613421 IQCDQ96DY2 449 aa15.35■□□□□ 0.05
GGA3-220ENST00000613421 NRBP1Q9UHY1 535 aa15.35■□□□□ 0.05
GGA3-220ENST00000613421 SH2B2O14492 632 aaPredicted RBP15.35■□□□□ 0.05
GGA3-220ENST00000613421 PTGDRQ13258 359 aa15.35■□□□□ 0.05
GGA3-220ENST00000613421 DNAJC21Q5F1R6 531 aaKnown RBP15.35■□□□□ 0.05
GGA3-220ENST00000613421 SPATA1Q5VX52 437 aa15.35■□□□□ 0.05
GGA3-220ENST00000613421 GALNT17Q6IS24 598 aa15.35■□□□□ 0.05
GGA3-220ENST00000613421 PPP2R2CQ9Y2T4 447 aa15.35■□□□□ 0.05
GGA3-220ENST00000613421 ERCC3P19447 782 aa15.35■□□□□ 0.05
GGA3-220ENST00000613421 GTF2IP78347 998 aa15.35■□□□□ 0.05
GGA3-220ENST00000613421 NELFCDQ8IXH7 590 aa15.35■□□□□ 0.05
GGA3-220ENST00000613421 NT5C3AQ9H0P0 336 aa15.35■□□□□ 0.05
GGA3-220ENST00000613421 SEC31BQ9NQW1 1179 aa15.35■□□□□ 0.05
GGA3-220ENST00000613421 ATP8A2Q9NTI2 1148 aa15.35■□□□□ 0.05
GGA3-220ENST00000613421 ATP6V0A2Q9Y487 856 aa15.35■□□□□ 0.05
GGA3-220ENST00000613421 KLRF2D3W0D1 207 aa15.34■□□□□ 0.05
GGA3-220ENST00000613421 DPCR1Q3MIW9 517 aa15.34■□□□□ 0.05
GGA3-220ENST00000613421 CCDC50Q8IVM0 306 aa15.34■□□□□ 0.05
GGA3-220ENST00000613421 PPIL4Q8WUA2 492 aaKnown RBP eCLIP15.34■□□□□ 0.05
GGA3-220ENST00000613421 DESI2Q9BSY9 194 aa15.34■□□□□ 0.05
GGA3-220ENST00000613421 MTRF1LQ9UGC7 380 aaKnown RBP15.34■□□□□ 0.05
GGA3-220ENST00000613421 ARHGEF40Q8TER5 1519 aa15.34■□□□□ 0.05
GGA3-220ENST00000613421 USP31Q70CQ4 1352 aa15.34■□□□□ 0.05
GGA3-220ENST00000613421 EBAG9O00559 213 aa15.34■□□□□ 0.05
GGA3-220ENST00000613421 BACH1O14867 736 aa15.34■□□□□ 0.05
GGA3-220ENST00000613421 SEMA3EO15041 775 aa15.34■□□□□ 0.05
GGA3-220ENST00000613421 TNFAIP3P21580 790 aa15.34■□□□□ 0.05
GGA3-220ENST00000613421 ETF1P62495 437 aaKnown RBP15.34■□□□□ 0.05
GGA3-220ENST00000613421 TCP10Q12799 353 aa15.34■□□□□ 0.05
GGA3-220ENST00000613421 OR8K1Q8NGG5 319 aa15.34■□□□□ 0.05
GGA3-220ENST00000613421 CCDC26Q8TAB7 109 aa15.34■□□□□ 0.05
GGA3-220ENST00000613421 GNL3Q9BVP2 549 aaKnown RBP eCLIP15.34■□□□□ 0.05
GGA3-220ENST00000613421 CYP27B1O15528 508 aa15.34■□□□□ 0.05
GGA3-220ENST00000613421 ATP2C2O75185 946 aa15.34■□□□□ 0.05
GGA3-220ENST00000613421 GSTA5Q7RTV2 222 aa15.34■□□□□ 0.05
GGA3-220ENST00000613421 MTUS1Q9ULD2 1270 aa15.34■□□□□ 0.05
GGA3-220ENST00000613421 NRKQ7Z2Y5 1582 aa15.34■□□□□ 0.05
GGA3-220ENST00000613421 ARHGEF35A5YM69 484 aa15.34■□□□□ 0.05
GGA3-220ENST00000613421 OR52Z1P0C646 297 aa15.34■□□□□ 0.05
GGA3-220ENST00000613421 USH1GQ495M9 461 aa15.34■□□□□ 0.05
GGA3-220ENST00000613421 USPL1Q5W0Q7 1092 aa15.34■□□□□ 0.05
GGA3-220ENST00000613421 TICAM2Q86XR7 235 aa15.34■□□□□ 0.05
GGA3-220ENST00000613421 CSRNP2Q9H175 543 aa15.34■□□□□ 0.05
GGA3-220ENST00000613421 FAM207AQ9NSI2 230 aaPredicted RBP15.34■□□□□ 0.05
GGA3-220ENST00000613421 USP40Q9NVE5 1235 aa15.34■□□□□ 0.05
GGA3-220ENST00000613421 ZNF804BA4D1E1 1349 aa15.34■□□□□ 0.05
GGA3-220ENST00000613421 B4DLN1 442 aa15.33■□□□□ 0.05
GGA3-220ENST00000613421 ZEB2O60315 1214 aa15.33■□□□□ 0.05
GGA3-220ENST00000613421 SP4Q02446 784 aa15.33■□□□□ 0.05
GGA3-220ENST00000613421 RAD51AP2Q09MP3 1159 aa15.33■□□□□ 0.05
GGA3-220ENST00000613421 GRIPAP1Q4V328 841 aa15.33■□□□□ 0.05
GGA3-220ENST00000613421 ERVV-1B6SEH8 477 aa15.33■□□□□ 0.04
GGA3-220ENST00000613421 ATP2B4P23634 1241 aa15.33■□□□□ 0.04
GGA3-220ENST00000613421 LONP1P36776 959 aaKnown RBP15.33■□□□□ 0.04
GGA3-220ENST00000613421 SEL1L2Q5TEA6 688 aa15.33■□□□□ 0.04
GGA3-220ENST00000613421 UIMC1Q96RL1 719 aa15.33■□□□□ 0.04
GGA3-220ENST00000613421 PSDA5PKW4 1024 aaPredicted RBP15.33■□□□□ 0.04
GGA3-220ENST00000613421 KIF4AO95239 1232 aa15.33■□□□□ 0.04
GGA3-220ENST00000613421 TECP42680 631 aa15.33■□□□□ 0.04
GGA3-220ENST00000613421 GABPB1Q06547 395 aaPredicted RBP15.33■□□□□ 0.04
GGA3-220ENST00000613421 NEK8Q86SG6 692 aa15.33■□□□□ 0.04
GGA3-220ENST00000613421 USP21Q9UK80 565 aa15.33■□□□□ 0.04
GGA3-220ENST00000613421 ZNF215Q9UL58 517 aaPredicted RBP15.33■□□□□ 0.04
GGA3-220ENST00000613421 INO80Q9ULG1 1556 aaPredicted RBP15.33■□□□□ 0.04
GGA3-220ENST00000613421 PTPRMP28827 1452 aa15.33■□□□□ 0.04
GGA3-220ENST00000613421 H7C1D1 291 aa15.33■□□□□ 0.04
GGA3-220ENST00000613421 IKBKBO14920 756 aa15.33■□□□□ 0.04
GGA3-220ENST00000613421 TOB2Q14106 344 aaPredicted RBP15.33■□□□□ 0.04
GGA3-220ENST00000613421 UTP14CQ5TAP6 766 aaKnown RBP15.33■□□□□ 0.04
GGA3-220ENST00000613421 NAP1L3Q99457 506 aaPredicted RBP15.33■□□□□ 0.04
GGA3-220ENST00000613421 FERMT1Q9BQL6 677 aa15.33■□□□□ 0.04
GGA3-220ENST00000613421 KDM3AQ9Y4C1 1321 aa15.32■□□□□ 0.04
GGA3-220ENST00000613421 GOLGA8HP0CJ92 632 aa15.32■□□□□ 0.04
GGA3-220ENST00000613421 BTDP43251 543 aa15.32■□□□□ 0.04
GGA3-220ENST00000613421 LCORLQ8N3X6 602 aa15.32■□□□□ 0.04
GGA3-220ENST00000613421 SELENOSQ9BQE4 189 aa15.32■□□□□ 0.04
GGA3-220ENST00000613421 RPN1P04843 607 aaKnown RBP15.32■□□□□ 0.04
GGA3-220ENST00000613421 KLHL30Q0D2K2 578 aa15.32■□□□□ 0.04
GGA3-220ENST00000613421 SFMBT2Q5VUG0 894 aa15.32■□□□□ 0.04
GGA3-220ENST00000613421 GPIHBP1Q8IV16 184 aa15.32■□□□□ 0.04
GGA3-220ENST00000613421 NUCKS1Q9H1E3 243 aaKnown RBP15.32■□□□□ 0.04
GGA3-220ENST00000613421 ATP2A1O14983 1001 aa15.32■□□□□ 0.04
GGA3-220ENST00000613421 PRKAB2O43741 272 aa15.32■□□□□ 0.04
GGA3-220ENST00000613421 ZYXQ15942 572 aaKnown RBP15.32■□□□□ 0.04
GGA3-220ENST00000613421 TYW1BQ6NUM6 668 aa15.32■□□□□ 0.04
GGA3-220ENST00000613421 RRAGAQ7L523 313 aa15.32■□□□□ 0.04
GGA3-220ENST00000613421 AFAP1L1Q8TED9 768 aa15.32■□□□□ 0.04
GGA3-220ENST00000613421 IFIH1Q9BYX4 1025 aaKnown RBP15.32■□□□□ 0.04
GGA3-220ENST00000613421 DNM2P50570 870 aa15.32■□□□□ 0.04
GGA3-220ENST00000613421 SMTNP53814 917 aa15.32■□□□□ 0.04
GGA3-220ENST00000613421 GPR161Q8N6U8 529 aaKnown RBP15.32■□□□□ 0.04
GGA3-220ENST00000613421 PIGBQ92521 554 aa15.32■□□□□ 0.04
GGA3-220ENST00000613421 TEKT1Q969V4 418 aa15.32■□□□□ 0.04
GGA3-220ENST00000613421 AXIN2Q9Y2T1 843 aa15.32■□□□□ 0.04
GGA3-220ENST00000613421 IFNAR1P17181 557 aa15.31■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms