RNA–Protein interactions for RNA: ENST00000611481.1

LINC00540-201, long intergenic non-protein coding RNA 540, humanhuman

TSL 4

Gene LINC00540, Length 588 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-201ENST00000611481 CCDC9Q9Y3X0 531 aaKnown RBP6.98□□□□□ -1.29
LINC00540-201ENST00000611481 DISP2A7MBM2 1401 aa6.98□□□□□ -1.29
LINC00540-201ENST00000611481 CARNS1A5YM72 827 aa6.97□□□□□ -1.29
LINC00540-201ENST00000611481 LRRC10BA6NIK2 292 aa6.97□□□□□ -1.29
LINC00540-201ENST00000611481 CEP152O94986 1710 aa6.97□□□□□ -1.29
LINC00540-201ENST00000611481 ITIH2P19823 946 aa6.97□□□□□ -1.29
LINC00540-201ENST00000611481 DCCP43146 1447 aa6.97□□□□□ -1.29
LINC00540-201ENST00000611481 ARHGAP4P98171 946 aa6.97□□□□□ -1.29
LINC00540-201ENST00000611481 GRM2Q14416 872 aa6.97□□□□□ -1.29
LINC00540-201ENST00000611481 NBPF8Q3BBV2 869 aa6.97□□□□□ -1.29
LINC00540-201ENST00000611481 ZSWIM9Q86XI8 627 aa6.97□□□□□ -1.29
LINC00540-201ENST00000611481 PHF6Q8IWS0 365 aaKnown RBP eCLIP6.97□□□□□ -1.29
LINC00540-201ENST00000611481 ISL2Q96A47 359 aa6.97□□□□□ -1.29
LINC00540-201ENST00000611481 CAMKK2Q96RR4 588 aa6.97□□□□□ -1.29
LINC00540-201ENST00000611481 TNKS1BP1Q9C0C2 1729 aaKnown RBP6.97□□□□□ -1.29
LINC00540-201ENST00000611481 TNKS2Q9H2K2 1166 aa6.97□□□□□ -1.29
LINC00540-201ENST00000611481 MBD5Q9P267 1494 aa6.97□□□□□ -1.29
LINC00540-201ENST00000611481 NEFMP07197 916 aa6.96□□□□□ -1.3
LINC00540-201ENST00000611481 IDI1Q13907 227 aa6.96□□□□□ -1.3
LINC00540-201ENST00000611481 DTHD1Q6ZMT9 781 aa6.96□□□□□ -1.3
LINC00540-201ENST00000611481 PDZD3Q86UT5 571 aa6.96□□□□□ -1.3
LINC00540-201ENST00000611481 ASB11Q8WXH4 323 aa6.96□□□□□ -1.3
LINC00540-201ENST00000611481 PPP4R2Q9NY27 417 aa6.96□□□□□ -1.3
LINC00540-201ENST00000611481 PODXL2Q9NZ53 605 aa6.96□□□□□ -1.3
LINC00540-201ENST00000611481 GPN3Q9UHW5 284 aaPredicted RBP6.96□□□□□ -1.3
LINC00540-201ENST00000611481 MYOM2P54296 1465 aa6.96□□□□□ -1.3
LINC00540-201ENST00000611481 CCNB3Q8WWL7 1395 aa6.95□□□□□ -1.3
LINC00540-201ENST00000611481 PLEKHG1Q9ULL1 1385 aa6.95□□□□□ -1.3
LINC00540-201ENST00000611481 NRKQ7Z2Y5 1582 aa6.95□□□□□ -1.3
LINC00540-201ENST00000611481 FAM83GA6ND36 823 aa6.95□□□□□ -1.3
LINC00540-201ENST00000611481 ERVK-24P63145 666 aa6.95□□□□□ -1.3
LINC00540-201ENST00000611481 KCNMB1Q16558 191 aa6.95□□□□□ -1.3
LINC00540-201ENST00000611481 ZC3H12AQ5D1E8 599 aaKnown RBP6.95□□□□□ -1.3
LINC00540-201ENST00000611481 RNF214Q8ND24 703 aa6.95□□□□□ -1.3
LINC00540-201ENST00000611481 TMC1Q8TDI8 760 aa6.95□□□□□ -1.3
LINC00540-201ENST00000611481 GTF2IRD1Q9UHL9 959 aa6.95□□□□□ -1.3
LINC00540-201ENST00000611481 TBX22Q9Y458 520 aa6.95□□□□□ -1.3
LINC00540-201ENST00000611481 CCDC18Q5T9S5 1454 aa6.95□□□□□ -1.3
LINC00540-201ENST00000611481 MARF1Q9Y4F3 1742 aaKnown RBP6.95□□□□□ -1.3
LINC00540-201ENST00000611481 COL22A1Q8NFW1 1626 aaPredicted RBP6.94□□□□□ -1.3
LINC00540-201ENST00000611481 TNS1Q9HBL0 1735 aaKnown RBP6.94□□□□□ -1.3
LINC00540-201ENST00000611481 IGF2BP3O00425 579 aaKnown RBP eCLIP6.94□□□□□ -1.3
LINC00540-201ENST00000611481 SERPINB4P48594 390 aa6.94□□□□□ -1.3
LINC00540-201ENST00000611481 ZP2Q05996 745 aa6.94□□□□□ -1.3
LINC00540-201ENST00000611481 IKZF1Q13422 519 aa6.94□□□□□ -1.3
LINC00540-201ENST00000611481 HEXIM2Q96MH2 286 aaKnown RBP6.94□□□□□ -1.3
LINC00540-201ENST00000611481 SYT17Q9BSW7 474 aa6.94□□□□□ -1.3
LINC00540-201ENST00000611481 KRTAP4-2Q9BYR5 136 aa6.94□□□□□ -1.3
LINC00540-201ENST00000611481 NIF3L1Q9GZT8 377 aa6.94□□□□□ -1.3
LINC00540-201ENST00000611481 PRDM7Q9NQW5 492 aa6.94□□□□□ -1.3
LINC00540-201ENST00000611481 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP6.94□□□□□ -1.3
LINC00540-201ENST00000611481 SLIT2O94813 1529 aa6.94□□□□□ -1.3
LINC00540-201ENST00000611481 XRCC5P13010 732 aaKnown RBP6.93□□□□□ -1.3
LINC00540-201ENST00000611481 ARNTP27540 789 aa6.93□□□□□ -1.3
LINC00540-201ENST00000611481 FCGRTP55899 365 aa6.93□□□□□ -1.3
LINC00540-201ENST00000611481 VPS72Q15906 364 aa6.93□□□□□ -1.3
LINC00540-201ENST00000611481 MLANAQ16655 118 aa6.93□□□□□ -1.3
LINC00540-201ENST00000611481 FAM214BQ7L5A3 538 aa6.93□□□□□ -1.3
LINC00540-201ENST00000611481 SULF2Q8IWU5 870 aa6.93□□□□□ -1.3
LINC00540-201ENST00000611481 EPS8L3Q8TE67 593 aaKnown RBP6.93□□□□□ -1.3
LINC00540-201ENST00000611481 TOX2Q96NM4 488 aa6.93□□□□□ -1.3
LINC00540-201ENST00000611481 CSRNP1Q96S65 589 aa6.93□□□□□ -1.3
LINC00540-201ENST00000611481 SHANK3Q9BYB0 1731 aa6.93□□□□□ -1.3
LINC00540-201ENST00000611481 ADGRB3O60242 1522 aa6.92□□□□□ -1.3
LINC00540-201ENST00000611481 ADGRB2O60241 1585 aa6.92□□□□□ -1.3
LINC00540-201ENST00000611481 ZNF503-AS2A6NEH8 195 aa6.92□□□□□ -1.3
LINC00540-201ENST00000611481 GPR182O15218 404 aa6.92□□□□□ -1.3
LINC00540-201ENST00000611481 TRIM37O94972 964 aa6.92□□□□□ -1.3
LINC00540-201ENST00000611481 RAP1GAPP47736 663 aa6.92□□□□□ -1.3
LINC00540-201ENST00000611481 EMILIN2Q9BXX0 1053 aa6.92□□□□□ -1.3
LINC00540-201ENST00000611481 CTNND2Q9UQB3 1225 aa6.92□□□□□ -1.3
LINC00540-201ENST00000611481 MYOM1P52179 1685 aa6.92□□□□□ -1.3
LINC00540-201ENST00000611481 PARD3Q8TEW0 1356 aa6.92□□□□□ -1.3
LINC00540-201ENST00000611481 ARHGAP31Q2M1Z3 1444 aa6.92□□□□□ -1.3
LINC00540-201ENST00000611481 CCDC141Q6ZP82 1450 aa6.92□□□□□ -1.3
LINC00540-201ENST00000611481 NUP188Q5SRE5 1749 aa6.91□□□□□ -1.3
LINC00540-201ENST00000611481 IGHA2P01877 340 aa6.91□□□□□ -1.3
LINC00540-201ENST00000611481 AFMP43652 599 aa6.91□□□□□ -1.3
LINC00540-201ENST00000611481 GPR162Q16538 588 aa6.91□□□□□ -1.3
LINC00540-201ENST00000611481 MAP1SQ66K74 1059 aaPredicted RBP6.91□□□□□ -1.3
LINC00540-201ENST00000611481 SPACA3Q8IXA5 215 aa6.91□□□□□ -1.3
LINC00540-201ENST00000611481 STK35Q8TDR2 534 aa6.91□□□□□ -1.3
LINC00540-201ENST00000611481 ORAI2Q96SN7 254 aa6.91□□□□□ -1.3
LINC00540-201ENST00000611481 PPP1R16BQ96T49 567 aa6.91□□□□□ -1.3
LINC00540-201ENST00000611481 PRDM10Q9NQV6 1147 aa6.91□□□□□ -1.3
LINC00540-201ENST00000611481 NLRP2Q9NX02 1062 aa6.91□□□□□ -1.3
LINC00540-201ENST00000611481 USTQ9Y2C2 406 aa6.91□□□□□ -1.3
LINC00540-201ENST00000611481 ADAMTS13Q76LX8 1427 aa6.91□□□□□ -1.3
LINC00540-201ENST00000611481 ADGRL3Q9HAR2 1447 aa6.91□□□□□ -1.3
LINC00540-201ENST00000611481 C1orf167Q5SNV9 1468 aa6.91□□□□□ -1.3
LINC00540-201ENST00000611481 TRPM2O94759 1503 aa6.91□□□□□ -1.3
LINC00540-201ENST00000611481 GNAT3A8MTJ3 354 aa6.9□□□□□ -1.3
LINC00540-201ENST00000611481 ZBTB7AO95365 584 aa6.9□□□□□ -1.3
LINC00540-201ENST00000611481 CILP2Q8IUL8 1156 aa6.9□□□□□ -1.3
LINC00540-201ENST00000611481 GPBAR1Q8TDU6 330 aa6.9□□□□□ -1.3
LINC00540-201ENST00000611481 ACSBG1Q96GR2 724 aa6.9□□□□□ -1.3
LINC00540-201ENST00000611481 LIN37Q96GY3 246 aaPredicted RBP6.9□□□□□ -1.3
LINC00540-201ENST00000611481 DMRTB1Q96MA1 342 aa6.9□□□□□ -1.3
LINC00540-201ENST00000611481 LMCD1Q9NZU5 365 aa6.9□□□□□ -1.3
LINC00540-201ENST00000611481 WWC3Q9ULE0 1092 aa6.9□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms