RNA–Protein interactions for RNA: ENST00000602029.1

VRK3-226, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 578 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-226ENST00000602029 MAGEB6P1A0A0J9YX57 407 aa6.28□□□□□ -1.4
VRK3-226ENST00000602029 DNM1LO00429 736 aa6.28□□□□□ -1.4
VRK3-226ENST00000602029 FLOT1O75955 427 aa6.28□□□□□ -1.4
VRK3-226ENST00000602029 CYP2E1P05181 493 aaPredicted RBP6.28□□□□□ -1.4
VRK3-226ENST00000602029 FOSL2P15408 326 aa6.28□□□□□ -1.4
VRK3-226ENST00000602029 PTPREP23469 700 aa6.28□□□□□ -1.4
VRK3-226ENST00000602029 JAG1P78504 1218 aa6.28□□□□□ -1.4
VRK3-226ENST00000602029 MTX1Q13505 466 aa6.28□□□□□ -1.4
VRK3-226ENST00000602029 MORN1Q5T089 497 aa6.28□□□□□ -1.4
VRK3-226ENST00000602029 MAP3K21Q5TCX8 1036 aa6.28□□□□□ -1.4
VRK3-226ENST00000602029 ZKSCAN2Q63HK3 967 aa6.28□□□□□ -1.4
VRK3-226ENST00000602029 CERS3Q8IU89 383 aa6.28□□□□□ -1.4
VRK3-226ENST00000602029 SPICE1Q8N0Z3 855 aa6.28□□□□□ -1.4
VRK3-226ENST00000602029 TMEM57Q8N5G2 664 aa6.28□□□□□ -1.4
VRK3-226ENST00000602029 ACER1Q8TDN7 264 aa6.28□□□□□ -1.4
VRK3-226ENST00000602029 MYLIPQ8WY64 445 aa6.28□□□□□ -1.4
VRK3-226ENST00000602029 ARHGAP45Q92619 1136 aa6.28□□□□□ -1.4
VRK3-226ENST00000602029 LPAR1Q92633 364 aa6.28□□□□□ -1.4
VRK3-226ENST00000602029 VTI1AQ96AJ9 217 aa6.28□□□□□ -1.4
VRK3-226ENST00000602029 RNPC3Q96LT9 517 aaKnown RBP6.28□□□□□ -1.4
VRK3-226ENST00000602029 SH2D4AQ9H788 454 aa6.28□□□□□ -1.4
VRK3-226ENST00000602029 DNAJC18Q9H819 358 aa6.28□□□□□ -1.4
VRK3-226ENST00000602029 ARHGEF10LQ9HCE6 1279 aa6.28□□□□□ -1.4
VRK3-226ENST00000602029 MCM9Q9NXL9 1143 aa6.28□□□□□ -1.4
VRK3-226ENST00000602029 TNNQ9UQP3 1299 aa6.28□□□□□ -1.4
VRK3-226ENST00000602029 MAST2Q6P0Q8 1798 aa6.27□□□□□ -1.41
VRK3-226ENST00000602029 PQBP1O60828 265 aaKnown RBP6.27□□□□□ -1.41
VRK3-226ENST00000602029 RAG1P15918 1043 aa6.27□□□□□ -1.41
VRK3-226ENST00000602029 ERCC3P19447 782 aa6.27□□□□□ -1.41
VRK3-226ENST00000602029 ADORA2AP29274 412 aa6.27□□□□□ -1.41
VRK3-226ENST00000602029 ADCYAP1R1P41586 468 aa6.27□□□□□ -1.41
VRK3-226ENST00000602029 PPP4CP60510 307 aa6.27□□□□□ -1.41
VRK3-226ENST00000602029 ICA1Q05084 483 aa6.27□□□□□ -1.41
VRK3-226ENST00000602029 SEPT2Q15019 361 aa6.27□□□□□ -1.41
VRK3-226ENST00000602029 TRIM60Q495X7 471 aa6.27□□□□□ -1.41
VRK3-226ENST00000602029 PRAMEF19Q5SWL8 479 aa6.27□□□□□ -1.41
VRK3-226ENST00000602029 FAM109BQ6ICB4 259 aaPredicted RBP6.27□□□□□ -1.41
VRK3-226ENST00000602029 CATSPERGQ6ZRH7 1159 aa6.27□□□□□ -1.41
VRK3-226ENST00000602029 IL27Q8NEV9 243 aa6.27□□□□□ -1.41
VRK3-226ENST00000602029 NPLOC4Q8TAT6 608 aa6.27□□□□□ -1.41
VRK3-226ENST00000602029 PPM1EQ8WY54 764 aa6.27□□□□□ -1.41
VRK3-226ENST00000602029 BADQ92934 168 aa6.27□□□□□ -1.41
VRK3-226ENST00000602029 KIAA1683Q9H0B3 1180 aa6.27□□□□□ -1.41
VRK3-226ENST00000602029 HOXC10Q9NYD6 342 aa6.27□□□□□ -1.41
VRK3-226ENST00000602029 TLR7Q9NYK1 1049 aaKnown RBP6.27□□□□□ -1.41
VRK3-226ENST00000602029 FLRT1Q9NZU1 646 aa6.27□□□□□ -1.41
VRK3-226ENST00000602029 BTBD7Q9P203 1132 aa6.27□□□□□ -1.41
VRK3-226ENST00000602029 EXOC6BQ9Y2D4 811 aa6.27□□□□□ -1.41
VRK3-226ENST00000602029 LOC285556D6RIA3 1793 aa6.26□□□□□ -1.41
VRK3-226ENST00000602029 SPDYE16A6NNV3 312 aaPredicted RBP6.26□□□□□ -1.41
VRK3-226ENST00000602029 GOLIM4O00461 696 aa6.26□□□□□ -1.41
VRK3-226ENST00000602029 IFIT2P09913 472 aaKnown RBP6.26□□□□□ -1.41
VRK3-226ENST00000602029 RARBP10826 455 aa6.26□□□□□ -1.41
VRK3-226ENST00000602029 COL6A1P12109 1028 aa6.26□□□□□ -1.41
VRK3-226ENST00000602029 FCER1AP12319 257 aa6.26□□□□□ -1.41
VRK3-226ENST00000602029 GRB14Q14449 540 aa6.26□□□□□ -1.41
VRK3-226ENST00000602029 KCTD2Q14681 263 aa6.26□□□□□ -1.41
VRK3-226ENST00000602029 COG2Q14746 738 aa6.26□□□□□ -1.41
VRK3-226ENST00000602029 TTF1Q15361 905 aaPredicted RBP6.26□□□□□ -1.41
VRK3-226ENST00000602029 SHHQ15465 462 aa6.26□□□□□ -1.41
VRK3-226ENST00000602029 SLC9C2Q5TAH2 1124 aa6.26□□□□□ -1.41
VRK3-226ENST00000602029 LHX8Q68G74 356 aa6.26□□□□□ -1.41
VRK3-226ENST00000602029 CCDC129Q6ZRS4 1044 aa6.26□□□□□ -1.41
VRK3-226ENST00000602029 NOL8Q76FK4 1167 aaKnown RBP6.26□□□□□ -1.41
VRK3-226ENST00000602029 ERC1Q8IUD2 1116 aa6.26□□□□□ -1.41
VRK3-226ENST00000602029 STK11IPQ8N1F8 1099 aa6.26□□□□□ -1.41
VRK3-226ENST00000602029 USP6NLQ92738 828 aa6.26□□□□□ -1.41
VRK3-226ENST00000602029 MMP19Q99542 508 aa6.26□□□□□ -1.41
VRK3-226ENST00000602029 MOV10L1Q9BXT6 1211 aaKnown RBP6.26□□□□□ -1.41
VRK3-226ENST00000602029 SPATC1LQ9H0A9 340 aa6.26□□□□□ -1.41
VRK3-226ENST00000602029 TTYH1Q9H313 450 aaPredicted RBP6.26□□□□□ -1.41
VRK3-226ENST00000602029 IL1RAPL2Q9NP60 686 aa6.26□□□□□ -1.41
VRK3-226ENST00000602029 GPR108Q9NPR9 543 aa6.26□□□□□ -1.41
VRK3-226ENST00000602029 XPNPEP3Q9NQH7 507 aa6.26□□□□□ -1.41
VRK3-226ENST00000602029 DBNLQ9UJU6 430 aaKnown RBP6.26□□□□□ -1.41
VRK3-226ENST00000602029 CNPY2Q9Y2B0 182 aa6.26□□□□□ -1.41
VRK3-226ENST00000602029 U3KPZ7 1027 aaPredicted RBP6.26□□□□□ -1.41
VRK3-226ENST00000602029 PLXNB2O15031 1838 aa6.26□□□□□ -1.41
VRK3-226ENST00000602029 PTPRFP10586 1907 aa6.26□□□□□ -1.41
VRK3-226ENST00000602029 SEPT4O43236 478 aa6.25□□□□□ -1.41
VRK3-226ENST00000602029 STRNO43815 780 aa6.25□□□□□ -1.41
VRK3-226ENST00000602029 CNMDO75829 334 aa6.25□□□□□ -1.41
VRK3-226ENST00000602029 PGK1P00558 417 aa6.25□□□□□ -1.41
VRK3-226ENST00000602029 CYBAP13498 195 aa6.25□□□□□ -1.41
VRK3-226ENST00000602029 PLCD1P51178 756 aa6.25□□□□□ -1.41
VRK3-226ENST00000602029 ATP8B2P98198 1209 aa6.25□□□□□ -1.41
VRK3-226ENST00000602029 HSP90AB4PQ58FF6 505 aa6.25□□□□□ -1.41
VRK3-226ENST00000602029 FAM47AQ5JRC9 791 aa6.25□□□□□ -1.41
VRK3-226ENST00000602029 TJAP1Q5JTD0 557 aa6.25□□□□□ -1.41
VRK3-226ENST00000602029 C9orf50Q5SZB4 431 aa6.25□□□□□ -1.41
VRK3-226ENST00000602029 SLC39A5Q6ZMH5 540 aa6.25□□□□□ -1.41
VRK3-226ENST00000602029 TMEM179Q6ZVK1 233 aa6.25□□□□□ -1.41
VRK3-226ENST00000602029 RNF180Q86T96 592 aa6.25□□□□□ -1.41
VRK3-226ENST00000602029 ALYREFQ86V81 257 aaKnown RBP6.25□□□□□ -1.41
VRK3-226ENST00000602029 CLEC10AQ8IUN9 316 aa6.25□□□□□ -1.41
VRK3-226ENST00000602029 SLC44A5Q8NCS7 719 aa6.25□□□□□ -1.41
VRK3-226ENST00000602029 SDR42E1Q8WUS8 393 aa6.25□□□□□ -1.41
VRK3-226ENST00000602029 SYMPKQ92797 1274 aaKnown RBP6.25□□□□□ -1.41
VRK3-226ENST00000602029 ATG4CQ96DT6 458 aa6.25□□□□□ -1.41
VRK3-226ENST00000602029 DYNLL2Q96FJ2 89 aa6.25□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms