RNA–Protein interactions for RNA: ENST00000600840.1

TRIM28-214, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 338 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-214ENST00000600840 LCORLQ8N3X6 602 aa10.48□□□□□ -0.73
TRIM28-214ENST00000600840 ACER1Q8TDN7 264 aa10.48□□□□□ -0.73
TRIM28-214ENST00000600840 SDR42E1Q8WUS8 393 aa10.48□□□□□ -0.73
TRIM28-214ENST00000600840 TBC1D2Q9BYX2 928 aa10.48□□□□□ -0.73
TRIM28-214ENST00000600840 DDX24Q9GZR7 859 aaKnown RBP eCLIP10.48□□□□□ -0.733e-16■■□□□ 12.8
TRIM28-214ENST00000600840 HELLSQ9NRZ9 838 aa10.48□□□□□ -0.73
TRIM28-214ENST00000600840 RBPJLQ9UBG7 517 aa10.48□□□□□ -0.73
TRIM28-214ENST00000600840 MORF4L1Q9UBU8 362 aa10.48□□□□□ -0.73
TRIM28-214ENST00000600840 PNMA3Q9UL41 463 aa10.48□□□□□ -0.73
TRIM28-214ENST00000600840 FRMPD3Q5JV73 1810 aa10.47□□□□□ -0.73
TRIM28-214ENST00000600840 MAGEB6P1A0A0J9YX57 407 aa10.47□□□□□ -0.73
TRIM28-214ENST00000600840 C19orf81C9J6K1 198 aa10.47□□□□□ -0.73
TRIM28-214ENST00000600840 PRKAB2O43741 272 aa10.47□□□□□ -0.73
TRIM28-214ENST00000600840 CNMDO75829 334 aa10.47□□□□□ -0.73
TRIM28-214ENST00000600840 CAPN2P17655 700 aa10.47□□□□□ -0.73
TRIM28-214ENST00000600840 GCLCP48506 637 aaPredicted RBP10.47□□□□□ -0.73
TRIM28-214ENST00000600840 HERVK_113P62684 666 aa10.47□□□□□ -0.73
TRIM28-214ENST00000600840 GABPAQ06546 454 aa10.47□□□□□ -0.73
TRIM28-214ENST00000600840 LRRC26Q2I0M4 334 aa10.47□□□□□ -0.73
TRIM28-214ENST00000600840 MCMDC2Q4G0Z9 681 aa10.47□□□□□ -0.73
TRIM28-214ENST00000600840 FAM109BQ6ICB4 259 aaPredicted RBP10.47□□□□□ -0.73
TRIM28-214ENST00000600840 ZNF589Q86UQ0 364 aaPredicted RBP10.47□□□□□ -0.73
TRIM28-214ENST00000600840 SLC44A5Q8NCS7 719 aa10.47□□□□□ -0.73
TRIM28-214ENST00000600840 MAFAQ8NHW3 353 aaPredicted RBP10.47□□□□□ -0.73
TRIM28-214ENST00000600840 COA7Q96BR5 231 aa10.47□□□□□ -0.73
TRIM28-214ENST00000600840 CDX2Q99626 313 aaPredicted RBP10.47□□□□□ -0.73
TRIM28-214ENST00000600840 TRIM34Q9BYJ4 488 aa10.47□□□□□ -0.73
TRIM28-214ENST00000600840 PORCNQ9H237 461 aa10.47□□□□□ -0.73
TRIM28-214ENST00000600840 TMOD4Q9NZQ9 345 aa10.47□□□□□ -0.73
TRIM28-214ENST00000600840 SERPINB13Q9UIV8 391 aa10.47□□□□□ -0.73
TRIM28-214ENST00000600840 MYH7P12883 1935 aa10.46□□□□□ -0.73
TRIM28-214ENST00000600840 A0A1W2PRG0 241 aa10.46□□□□□ -0.73
TRIM28-214ENST00000600840 GSG1L2A8MUP6 293 aa10.46□□□□□ -0.73
TRIM28-214ENST00000600840 HIP1O00291 1037 aa10.46□□□□□ -0.73
TRIM28-214ENST00000600840 SGSM2O43147 1006 aa10.46□□□□□ -0.73
TRIM28-214ENST00000600840 HMGCRP04035 888 aa10.46□□□□□ -0.73
TRIM28-214ENST00000600840 IRX3P78415 501 aaPredicted RBP10.46□□□□□ -0.73
TRIM28-214ENST00000600840 CERKLQ49MI3 558 aaPredicted RBP10.46□□□□□ -0.73
TRIM28-214ENST00000600840 KIAA1755Q5JYT7 1200 aa10.46□□□□□ -0.73
TRIM28-214ENST00000600840 ZNF697Q5TEC3 545 aa10.46□□□□□ -0.73
TRIM28-214ENST00000600840 MYLIPQ8WY64 445 aa10.46□□□□□ -0.73
TRIM28-214ENST00000600840 TRIB2Q92519 343 aa10.46□□□□□ -0.73
TRIM28-214ENST00000600840 DYNLL2Q96FJ2 89 aa10.46□□□□□ -0.73
TRIM28-214ENST00000600840 EHD4Q9H223 541 aa10.46□□□□□ -0.73
TRIM28-214ENST00000600840 ARMT1Q9H993 441 aa10.46□□□□□ -0.73
TRIM28-214ENST00000600840 HMX1Q9NP08 348 aaPredicted RBP10.46□□□□□ -0.73
TRIM28-214ENST00000600840 DCP1AQ9NPI6 582 aaPredicted RBP10.46□□□□□ -0.73
TRIM28-214ENST00000600840 OGDHLQ9ULD0 1010 aa10.46□□□□□ -0.73
TRIM28-214ENST00000600840 LTBP2Q14767 1821 aa10.46□□□□□ -0.74
TRIM28-214ENST00000600840 RLFQ13129 1914 aa10.46□□□□□ -0.74
TRIM28-214ENST00000600840 CYP2D7A0A087X1C5 515 aa10.45□□□□□ -0.74
TRIM28-214ENST00000600840 GPAA1O43292 621 aa10.45□□□□□ -0.74
TRIM28-214ENST00000600840 CDC45O75419 566 aa10.45□□□□□ -0.74
TRIM28-214ENST00000600840 MBD4O95243 580 aa10.45□□□□□ -0.74
TRIM28-214ENST00000600840 POLR3DP05423 398 aaPredicted RBP10.45□□□□□ -0.74
TRIM28-214ENST00000600840 CYP2B6P20813 491 aa10.45□□□□□ -0.74
TRIM28-214ENST00000600840 PABPC4Q13310 644 aaKnown RBP eCLIP10.45□□□□□ -0.747e-8■□□□□ 8.3
TRIM28-214ENST00000600840 SEPT2Q15019 361 aa10.45□□□□□ -0.74
TRIM28-214ENST00000600840 RAB3GAP1Q15042 981 aa10.45□□□□□ -0.74
TRIM28-214ENST00000600840 ABCB5Q2M3G0 1257 aa10.45□□□□□ -0.74
TRIM28-214ENST00000600840 LRRFIP1Q32MZ4 808 aaKnown RBP10.45□□□□□ -0.74
TRIM28-214ENST00000600840 C8orf34Q49A92 452 aa10.45□□□□□ -0.74
TRIM28-214ENST00000600840 USP17L2Q6R6M4 530 aa10.45□□□□□ -0.74
TRIM28-214ENST00000600840 CWC27Q6UX04 472 aaKnown RBP10.45□□□□□ -0.74
TRIM28-214ENST00000600840 CCDC129Q6ZRS4 1044 aa10.45□□□□□ -0.74
TRIM28-214ENST00000600840 TTC6Q86TZ1 520 aa10.45□□□□□ -0.74
TRIM28-214ENST00000600840 CLEC10AQ8IUN9 316 aa10.45□□□□□ -0.74
TRIM28-214ENST00000600840 ESYT1Q9BSJ8 1104 aa10.45□□□□□ -0.74
TRIM28-214ENST00000600840 PAGR1Q9BTK6 254 aa10.45□□□□□ -0.74
TRIM28-214ENST00000600840 EPB41L4AQ9HCS5 686 aaPredicted RBP10.45□□□□□ -0.74
TRIM28-214ENST00000600840 GINM1Q9NU53 330 aa10.45□□□□□ -0.74
TRIM28-214ENST00000600840 MCM9Q9NXL9 1143 aa10.45□□□□□ -0.74
TRIM28-214ENST00000600840 PATL2C9JE40 543 aaKnown RBP10.44□□□□□ -0.74
TRIM28-214ENST00000600840 COL6A1P12109 1028 aa10.44□□□□□ -0.74
TRIM28-214ENST00000600840 ERVK-9P63128 1117 aa10.44□□□□□ -0.74
TRIM28-214ENST00000600840 ERVK-24P63145 666 aa10.44□□□□□ -0.74
TRIM28-214ENST00000600840 ALX1Q15699 326 aa10.44□□□□□ -0.74
TRIM28-214ENST00000600840 CCL14Q16627 93 aa10.44□□□□□ -0.74
TRIM28-214ENST00000600840 VPS53Q5VIR6 699 aa10.44□□□□□ -0.74
TRIM28-214ENST00000600840 CATSPERGQ6ZRH7 1159 aa10.44□□□□□ -0.74
TRIM28-214ENST00000600840 CERS3Q8IU89 383 aa10.44□□□□□ -0.74
TRIM28-214ENST00000600840 SIAH1Q8IUQ4 282 aa10.44□□□□□ -0.74
TRIM28-214ENST00000600840 GPRC5AQ8NFJ5 357 aa10.44□□□□□ -0.74
TRIM28-214ENST00000600840 USP6NLQ92738 828 aa10.44□□□□□ -0.74
TRIM28-214ENST00000600840 C12orf42Q96LP6 360 aa10.44□□□□□ -0.74
TRIM28-214ENST00000600840 CRNKL1Q9BZJ0 848 aaKnown RBP10.44□□□□□ -0.74
TRIM28-214ENST00000600840 KIAA1683Q9H0B3 1180 aa10.44□□□□□ -0.74
TRIM28-214ENST00000600840 BTBD7Q9P203 1132 aa10.44□□□□□ -0.74
TRIM28-214ENST00000600840 MYH8P13535 1937 aa10.44□□□□□ -0.74
TRIM28-214ENST00000600840 CCDC171Q6TFL3 1326 aa10.43□□□□□ -0.74
TRIM28-214ENST00000600840 RAD50Q92878 1312 aa10.43□□□□□ -0.74
TRIM28-214ENST00000600840 SEC24BO95487 1268 aa10.43□□□□□ -0.74
TRIM28-214ENST00000600840 HSPD1P10809 573 aaKnown RBP10.43□□□□□ -0.74
TRIM28-214ENST00000600840 PRKAR2AP13861 404 aaKnown RBP10.43□□□□□ -0.74
TRIM28-214ENST00000600840 VCAM1P19320 739 aa10.43□□□□□ -0.74
TRIM28-214ENST00000600840 PTH1RQ03431 593 aa10.43□□□□□ -0.74
TRIM28-214ENST00000600840 MORN1Q5T089 497 aa10.43□□□□□ -0.74
TRIM28-214ENST00000600840 GIMAP6Q6P9H5 292 aa10.43□□□□□ -0.74
TRIM28-214ENST00000600840 GPR142Q7Z601 462 aa10.43□□□□□ -0.74
TRIM28-214ENST00000600840 MAP4K1Q92918 833 aa10.43□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms