RNA–Protein interactions for RNA: ENST00000599833.1

SHKBP1-221, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 761 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-221ENST00000599833 PCP11498 1178 aaKnown RBP23.12■■□□□ 1.29
SHKBP1-221ENST00000599833 RPAP3Q9H6T3 665 aaPredicted RBP23.12■■□□□ 1.29
SHKBP1-221ENST00000599833 PNMA3Q9UL41 463 aa23.12■■□□□ 1.29
SHKBP1-221ENST00000599833 PEX10O60683 326 aa23.11■■□□□ 1.29
SHKBP1-221ENST00000599833 CDC45O75419 566 aa23.11■■□□□ 1.29
SHKBP1-221ENST00000599833 HERVK_113P62684 666 aa23.11■■□□□ 1.29
SHKBP1-221ENST00000599833 LACTBP83111 547 aaPredicted RBP23.11■■□□□ 1.29
SHKBP1-221ENST00000599833 PABPC4Q13310 644 aaKnown RBP eCLIP23.11■■□□□ 1.29
SHKBP1-221ENST00000599833 TXNRD2Q9NNW7 524 aa23.11■■□□□ 1.29
SHKBP1-221ENST00000599833 CTNNA3Q9UI47 895 aa23.11■■□□□ 1.29
SHKBP1-221ENST00000599833 USP17L15C9J2P7 530 aa23.1■■□□□ 1.29
SHKBP1-221ENST00000599833 USP17L13C9JLJ4 530 aa23.1■■□□□ 1.29
SHKBP1-221ENST00000599833 USP17L11C9JVI0 530 aa23.1■■□□□ 1.29
SHKBP1-221ENST00000599833 USP17L18D6R9N7 530 aa23.1■■□□□ 1.29
SHKBP1-221ENST00000599833 USP17L22D6RA61 530 aa23.1■■□□□ 1.29
SHKBP1-221ENST00000599833 USP17L17D6RBQ6 530 aa23.1■■□□□ 1.29
SHKBP1-221ENST00000599833 USP17L19D6RCP7 530 aa23.1■■□□□ 1.29
SHKBP1-221ENST00000599833 USP17L20D6RJB6 530 aa23.1■■□□□ 1.29
SHKBP1-221ENST00000599833 CNMDO75829 334 aa23.1■■□□□ 1.29
SHKBP1-221ENST00000599833 OSBPP22059 807 aa23.1■■□□□ 1.29
SHKBP1-221ENST00000599833 USP17L24Q0WX57 530 aa23.1■■□□□ 1.29
SHKBP1-221ENST00000599833 IMMTQ16891 758 aaKnown RBP23.1■■□□□ 1.29
SHKBP1-221ENST00000599833 RCSD1Q6JBY9 416 aa23.1■■□□□ 1.29
SHKBP1-221ENST00000599833 LBX2Q6XYB7 198 aa23.1■■□□□ 1.29
SHKBP1-221ENST00000599833 CTU1Q7Z7A3 348 aaKnown RBP23.1■■□□□ 1.29
SHKBP1-221ENST00000599833 SPICE1Q8N0Z3 855 aa23.1■■□□□ 1.29
SHKBP1-221ENST00000599833 LPAR1Q92633 364 aa23.1■■□□□ 1.29
SHKBP1-221ENST00000599833 TCP11L1Q9NUJ3 509 aa23.1■■□□□ 1.29
SHKBP1-221ENST00000599833 RBPJLQ9UBG7 517 aa23.1■■□□□ 1.29
SHKBP1-221ENST00000599833 MORF4L1Q9UBU8 362 aa23.1■■□□□ 1.29
SHKBP1-221ENST00000599833 CLIP2Q9UDT6 1046 aa23.1■■□□□ 1.29
SHKBP1-221ENST00000599833 SYNPO2Q9UMS6 1093 aa23.1■■□□□ 1.29
SHKBP1-221ENST00000599833 TSPY2A6NKD2 308 aa23.09■■□□□ 1.29
SHKBP1-221ENST00000599833 RANBP6O60518 1105 aaKnown RBP23.09■■□□□ 1.29
SHKBP1-221ENST00000599833 TTLL1O95922 423 aa23.09■■□□□ 1.29
SHKBP1-221ENST00000599833 MFSD6Q6ZSS7 791 aa23.09■■□□□ 1.29
SHKBP1-221ENST00000599833 STOX1Q6ZVD7 989 aa23.09■■□□□ 1.29
SHKBP1-221ENST00000599833 OTOP1Q7RTM1 612 aa23.09■■□□□ 1.29
SHKBP1-221ENST00000599833 SH2D4AQ9H788 454 aa23.09■■□□□ 1.29
SHKBP1-221ENST00000599833 RBM8AQ9Y5S9 174 aaKnown RBP23.09■■□□□ 1.29
SHKBP1-221ENST00000599833 U3KPZ7 1027 aaPredicted RBP23.09■■□□□ 1.29
SHKBP1-221ENST00000599833 PLXNB2O15031 1838 aa23.09■■□□□ 1.29
SHKBP1-221ENST00000599833 COL11A1P12107 1806 aaPredicted RBP23.09■■□□□ 1.29
SHKBP1-221ENST00000599833 SPDYE16A6NNV3 312 aaPredicted RBP23.08■■□□□ 1.29
SHKBP1-221ENST00000599833 WDR46O15213 610 aaKnown RBP23.08■■□□□ 1.29
SHKBP1-221ENST00000599833 NDUFB10O96000 172 aa23.08■■□□□ 1.29
SHKBP1-221ENST00000599833 ATP2B2Q01814 1243 aa23.08■■□□□ 1.29
SHKBP1-221ENST00000599833 FAM110CQ1W6H9 321 aa23.08■■□□□ 1.29
SHKBP1-221ENST00000599833 LRRC47Q8N1G4 583 aaKnown RBP23.08■■□□□ 1.29
SHKBP1-221ENST00000599833 ANKRD13CQ8N6S4 541 aa23.08■■□□□ 1.29
SHKBP1-221ENST00000599833 ERO1AQ96HE7 468 aa23.08■■□□□ 1.29
SHKBP1-221ENST00000599833 RNF41Q9H4P4 317 aaPredicted RBP23.08■■□□□ 1.29
SHKBP1-221ENST00000599833 F5H6K3 240 aa23.07■■□□□ 1.28
SHKBP1-221ENST00000599833 GCLCP48506 637 aaPredicted RBP23.07■■□□□ 1.28
SHKBP1-221ENST00000599833 IRX3P78415 501 aaPredicted RBP23.07■■□□□ 1.28
SHKBP1-221ENST00000599833 KLRC3Q07444 240 aa23.07■■□□□ 1.28
SHKBP1-221ENST00000599833 COL9A3Q14050 684 aaPredicted RBP23.07■■□□□ 1.28
SHKBP1-221ENST00000599833 RRP12Q5JTH9 1297 aaKnown RBP23.07■■□□□ 1.28
SHKBP1-221ENST00000599833 GMCL1P1Q8NEA9 526 aa23.07■■□□□ 1.28
SHKBP1-221ENST00000599833 SMCR8Q8TEV9 937 aaPredicted RBP23.07■■□□□ 1.28
SHKBP1-221ENST00000599833 TRIM47Q96LD4 638 aa23.07■■□□□ 1.28
SHKBP1-221ENST00000599833 MCOLN1Q9GZU1 580 aa23.07■■□□□ 1.28
SHKBP1-221ENST00000599833 NECTIN1Q15223 517 aa23.06■■□□□ 1.28
SHKBP1-221ENST00000599833 Q3C1V9 767 aa23.06■■□□□ 1.28
SHKBP1-221ENST00000599833 RASGRP2Q7LDG7 609 aa23.06■■□□□ 1.28
SHKBP1-221ENST00000599833 NUP88Q99567 741 aaPredicted RBP23.06■■□□□ 1.28
SHKBP1-221ENST00000599833 B4E1Z4 1266 aa23.05■■□□□ 1.28
SHKBP1-221ENST00000599833 NT5C2P49902 561 aa23.05■■□□□ 1.28
SHKBP1-221ENST00000599833 GOPCQ9HD26 462 aa23.05■■□□□ 1.28
SHKBP1-221ENST00000599833 FBXO28Q9NVF7 368 aa23.05■■□□□ 1.28
SHKBP1-221ENST00000599833 BTBD7Q9P203 1132 aa23.05■■□□□ 1.28
SHKBP1-221ENST00000599833 ADAMTS5Q9UNA0 930 aa23.05■■□□□ 1.28
SHKBP1-221ENST00000599833 KDM4AO75164 1064 aa23.04■■□□□ 1.28
SHKBP1-221ENST00000599833 DSG3P32926 999 aa23.04■■□□□ 1.28
SHKBP1-221ENST00000599833 FAM83BQ5T0W9 1011 aa23.04■■□□□ 1.28
SHKBP1-221ENST00000599833 CYB5R4Q7L1T6 521 aa23.04■■□□□ 1.28
SHKBP1-221ENST00000599833 ESR2Q92731 530 aa23.04■■□□□ 1.28
SHKBP1-221ENST00000599833 TMEM47Q9BQJ4 181 aa23.04■■□□□ 1.28
SHKBP1-221ENST00000599833 TOMM22Q9NS69 142 aa23.04■■□□□ 1.28
SHKBP1-221ENST00000599833 ZSWIM5Q9P217 1185 aa23.04■■□□□ 1.28
SHKBP1-221ENST00000599833 TRIM17Q9Y577 477 aa23.04■■□□□ 1.28
SHKBP1-221ENST00000599833 E7EWF7 191 aa23.03■■□□□ 1.28
SHKBP1-221ENST00000599833 COG2Q14746 738 aa23.03■■□□□ 1.28
SHKBP1-221ENST00000599833 ANKS1AQ92625 1134 aa23.03■■□□□ 1.28
SHKBP1-221ENST00000599833 ANO2Q9NQ90 1003 aa23.03■■□□□ 1.28
SHKBP1-221ENST00000599833 STX8Q9UNK0 236 aa23.03■■□□□ 1.28
SHKBP1-221ENST00000599833 MYPNQ86TC9 1320 aa23.03■■□□□ 1.28
SHKBP1-221ENST00000599833 PSMC4P43686 418 aa23.02■■□□□ 1.28
SHKBP1-221ENST00000599833 ERVK-9P63128 1117 aa23.02■■□□□ 1.28
SHKBP1-221ENST00000599833 ERVK-24P63145 666 aa23.02■■□□□ 1.28
SHKBP1-221ENST00000599833 TNS4Q8IZW8 715 aa23.02■■□□□ 1.28
SHKBP1-221ENST00000599833 REPS2Q8NFH8 660 aa23.02■■□□□ 1.28
SHKBP1-221ENST00000599833 GMCL1Q96IK5 515 aa23.02■■□□□ 1.28
SHKBP1-221ENST00000599833 ZKSCAN3Q9BRR0 538 aa23.02■■□□□ 1.28
SHKBP1-221ENST00000599833 TANGO6Q9C0B7 1094 aa23.02■■□□□ 1.28
SHKBP1-221ENST00000599833 EFCC1Q9HA90 598 aa23.02■■□□□ 1.28
SHKBP1-221ENST00000599833 PTPN22Q9Y2R2 807 aa23.02■■□□□ 1.28
SHKBP1-221ENST00000599833 RABGAP1Q9Y3P9 1069 aa23.02■■□□□ 1.28
SHKBP1-221ENST00000599833 SLC27A2O14975 620 aa23.01■■□□□ 1.27
SHKBP1-221ENST00000599833 CREB3L3Q68CJ9 461 aa23.01■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms