RNA–Protein interactions for RNA: ENST00000599538.5

VRK3-217, Transcript of vaccinia related kinase 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VRK3, Length 2,126 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-217ENST00000599538 TYW1BQ6NUM6 668 aa16.62■□□□□ 0.25
VRK3-217ENST00000599538 METTL16Q86W50 562 aaKnown RBP16.62■□□□□ 0.25
VRK3-217ENST00000599538 PLA2G4DQ86XP0 818 aa16.62■□□□□ 0.25
VRK3-217ENST00000599538 C2CD5Q86YS7 1000 aa16.62■□□□□ 0.25
VRK3-217ENST00000599538 FOXP4Q8IVH2 680 aaPredicted RBP16.62■□□□□ 0.25
VRK3-217ENST00000599538 SLF2Q8IX21 1173 aa16.62■□□□□ 0.25
VRK3-217ENST00000599538 AOPEPQ8N6M6 819 aa16.62■□□□□ 0.25
VRK3-217ENST00000599538 TRIM5Q9C035 493 aa16.62■□□□□ 0.25
VRK3-217ENST00000599538 CAVIN2O95810 425 aa16.61■□□□□ 0.25
VRK3-217ENST00000599538 SLURP2P0DP57 97 aa16.61■□□□□ 0.25
VRK3-217ENST00000599538 KIF5BP33176 963 aa16.61■□□□□ 0.25
VRK3-217ENST00000599538 ZNF75DP51815 510 aa16.61■□□□□ 0.25
VRK3-217ENST00000599538 GRM4Q14833 912 aa16.61■□□□□ 0.25
VRK3-217ENST00000599538 EZH2Q15910 746 aaKnown RBP16.61■□□□□ 0.25
VRK3-217ENST00000599538 CERS3Q8IU89 383 aa16.61■□□□□ 0.25
VRK3-217ENST00000599538 TIGD1Q96MW7 591 aa16.61■□□□□ 0.25
VRK3-217ENST00000599538 PCDHAC2Q9Y5I4 1007 aa16.61■□□□□ 0.25
VRK3-217ENST00000599538 EN1Q05925 392 aaPredicted RBP16.61■□□□□ 0.25
VRK3-217ENST00000599538 CSRNP2Q9H175 543 aa16.61■□□□□ 0.25
VRK3-217ENST00000599538 KCNF1Q9H3M0 494 aa16.61■□□□□ 0.25
VRK3-217ENST00000599538 NRBP1Q9UHY1 535 aa16.61■□□□□ 0.25
VRK3-217ENST00000599538 FOCADQ5VW36 1801 aa16.61■□□□□ 0.25
VRK3-217ENST00000599538 SLX4Q8IY92 1834 aa16.61■□□□□ 0.25
VRK3-217ENST00000599538 TRIM75PA6NK02 468 aa16.6■□□□□ 0.25
VRK3-217ENST00000599538 GOLGA6L19H0YKK7 550 aa16.6■□□□□ 0.25
VRK3-217ENST00000599538 NLRP5P59047 1200 aa16.6■□□□□ 0.25
VRK3-217ENST00000599538 ZNF174Q15697 407 aa16.6■□□□□ 0.25
VRK3-217ENST00000599538 POTEAQ6S8J7 498 aa16.6■□□□□ 0.25
VRK3-217ENST00000599538 CEP57L1Q8IYX8 460 aa16.6■□□□□ 0.25
VRK3-217ENST00000599538 C17orf53Q8N3J3 647 aaPredicted RBP16.6■□□□□ 0.25
VRK3-217ENST00000599538 NEDD1Q8NHV4 660 aa16.6■□□□□ 0.25
VRK3-217ENST00000599538 CEP95Q96GE4 821 aa16.6■□□□□ 0.25
VRK3-217ENST00000599538 PDGFDQ9GZP0 370 aaPredicted RBP16.6■□□□□ 0.25
VRK3-217ENST00000599538 SRPRBQ9Y5M8 271 aaKnown RBP16.6■□□□□ 0.25
VRK3-217ENST00000599538 KRBA2Q6ZNG9 492 aa16.6■□□□□ 0.25
VRK3-217ENST00000599538 BECN2A8MW95 431 aa16.59■□□□□ 0.25
VRK3-217ENST00000599538 PIK3AP1Q6ZUJ8 805 aa16.59■□□□□ 0.25
VRK3-217ENST00000599538 PDILTQ8N807 584 aa16.59■□□□□ 0.25
VRK3-217ENST00000599538 RASGRP4Q8TDF6 673 aa16.59■□□□□ 0.25
VRK3-217ENST00000599538 TUBE1Q9UJT0 475 aa16.59■□□□□ 0.25
VRK3-217ENST00000599538 PALM3A6NDB9 673 aaPredicted RBP16.58■□□□□ 0.25
VRK3-217ENST00000599538 G3V3G9 751 aa16.58■□□□□ 0.25
VRK3-217ENST00000599538 POLR2DO15514 142 aaKnown RBP16.58■□□□□ 0.25
VRK3-217ENST00000599538 NLRP12P59046 1061 aa16.58■□□□□ 0.25
VRK3-217ENST00000599538 DCAF8Q5TAQ9 597 aa16.58■□□□□ 0.25
VRK3-217ENST00000599538 USP17L2Q6R6M4 530 aa16.58■□□□□ 0.25
VRK3-217ENST00000599538 CLEC10AQ8IUN9 316 aa16.58■□□□□ 0.25
VRK3-217ENST00000599538 CNNM3Q8NE01 707 aa16.58■□□□□ 0.25
VRK3-217ENST00000599538 USP40Q9NVE5 1235 aa16.58■□□□□ 0.25
VRK3-217ENST00000599538 SCN9AQ15858 1988 aa16.58■□□□□ 0.25
VRK3-217ENST00000599538 A0A087X0B3 334 aa16.58■□□□□ 0.24
VRK3-217ENST00000599538 PTGS1P23219 599 aa16.58■□□□□ 0.24
VRK3-217ENST00000599538 MDM2Q00987 491 aaPredicted RBP16.58■□□□□ 0.24
VRK3-217ENST00000599538 GABPAQ06546 454 aa16.58■□□□□ 0.24
VRK3-217ENST00000599538 NFIAQ12857 509 aa16.58■□□□□ 0.24
VRK3-217ENST00000599538 SLC15A2Q16348 729 aa16.58■□□□□ 0.24
VRK3-217ENST00000599538 APOBEC3HQ6NTF7 200 aaKnown RBP16.58■□□□□ 0.24
VRK3-217ENST00000599538 CDC42EP5Q6NZY7 148 aa16.58■□□□□ 0.24
VRK3-217ENST00000599538 GRAMD1CQ8IYS0 662 aa16.58■□□□□ 0.24
VRK3-217ENST00000599538 EPSTI1Q96J88 318 aa16.58■□□□□ 0.24
VRK3-217ENST00000599538 ZNF287Q9HBT7 754 aa16.58■□□□□ 0.24
VRK3-217ENST00000599538 BRMS1Q9HCU9 246 aa16.58■□□□□ 0.24
VRK3-217ENST00000599538 SERTAD1Q9UHV2 236 aa16.58■□□□□ 0.24
VRK3-217ENST00000599538 SUGT1Q9Y2Z0 365 aa16.58■□□□□ 0.24
VRK3-217ENST00000599538 PCDHA5Q9Y5H7 936 aa16.58■□□□□ 0.24
VRK3-217ENST00000599538 QSER1Q2KHR3 1735 aa16.58■□□□□ 0.24
VRK3-217ENST00000599538 H0YIN7 160 aa16.57■□□□□ 0.24
VRK3-217ENST00000599538 PRR29P0C7W0 189 aa16.57■□□□□ 0.24
VRK3-217ENST00000599538 NT5C2P49902 561 aa16.57■□□□□ 0.24
VRK3-217ENST00000599538 CCDC178Q5BJE1 867 aa16.57■□□□□ 0.24
VRK3-217ENST00000599538 TTC38Q5R3I4 469 aa16.57■□□□□ 0.24
VRK3-217ENST00000599538 WWC2Q6AWC2 1192 aa16.57■□□□□ 0.24
VRK3-217ENST00000599538 CEP131Q9UPN4 1083 aa16.57■□□□□ 0.24
VRK3-217ENST00000599538 KLRF2D3W0D1 207 aa16.57■□□□□ 0.24
VRK3-217ENST00000599538 AKR1B1P15121 316 aa16.57■□□□□ 0.24
VRK3-217ENST00000599538 BMP6P22004 513 aa16.57■□□□□ 0.24
VRK3-217ENST00000599538 SARM1Q6SZW1 724 aa16.57■□□□□ 0.24
VRK3-217ENST00000599538 KIAA0825Q8IV33 1275 aa16.57■□□□□ 0.24
VRK3-217ENST00000599538 ZFPM1Q8IX07 1006 aa16.57■□□□□ 0.24
VRK3-217ENST00000599538 ZNF579Q8NAF0 562 aaKnown RBP16.57■□□□□ 0.24
VRK3-217ENST00000599538 CAMKK2Q96RR4 588 aa16.57■□□□□ 0.24
VRK3-217ENST00000599538 CACNB3P54284 484 aa16.56■□□□□ 0.24
VRK3-217ENST00000599538 EIF6P56537 245 aaKnown RBP16.56■□□□□ 0.24
VRK3-217ENST00000599538 PTGDRQ13258 359 aa16.56■□□□□ 0.24
VRK3-217ENST00000599538 NCAPHQ15003 741 aa16.56■□□□□ 0.24
VRK3-217ENST00000599538 ZRSR1Q15695 479 aaKnown RBP16.56■□□□□ 0.24
VRK3-217ENST00000599538 CCDC144BQ3MJ40 725 aa16.56■□□□□ 0.24
VRK3-217ENST00000599538 CCDC186Q7Z3E2 898 aa16.56■□□□□ 0.24
VRK3-217ENST00000599538 TMX4Q9H1E5 349 aaPredicted RBP16.56■□□□□ 0.24
VRK3-217ENST00000599538 FAM13BQ9NYF5 915 aa16.56■□□□□ 0.24
VRK3-217ENST00000599538 PYCARDQ9ULZ3 195 aa16.56■□□□□ 0.24
VRK3-217ENST00000599538 DRC7Q8IY82 874 aa16.55■□□□□ 0.24
VRK3-217ENST00000599538 BLIDQ8IZY5 108 aa16.55■□□□□ 0.24
VRK3-217ENST00000599538 NAT10Q9H0A0 1025 aaKnown RBP16.55■□□□□ 0.24
VRK3-217ENST00000599538 M0R2N6 131 aa16.55■□□□□ 0.24
VRK3-217ENST00000599538 ACTN4O43707 911 aaKnown RBP16.55■□□□□ 0.24
VRK3-217ENST00000599538 CRKP46108 304 aa16.55■□□□□ 0.24
VRK3-217ENST00000599538 NOVP48745 357 aa16.55■□□□□ 0.24
VRK3-217ENST00000599538 GNAQP50148 359 aa16.55■□□□□ 0.24
VRK3-217ENST00000599538 STYK1Q6J9G0 422 aa16.55■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms