RNA–Protein interactions for RNA: ENST00000599322.5

LIG1-218, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 620 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-218ENST00000599322 COG2Q14746 738 aa16.83■□□□□ 0.28
LIG1-218ENST00000599322 DIAPH3Q9NSV4 1193 aa16.83■□□□□ 0.28
LIG1-218ENST00000599322 TMX2Q9Y320 296 aa16.83■□□□□ 0.28
LIG1-218ENST00000599322 RABGAP1Q9Y3P9 1069 aa16.83■□□□□ 0.28
LIG1-218ENST00000599322 DDX60LQ5H9U9 1706 aaKnown RBP16.82■□□□□ 0.28
LIG1-218ENST00000599322 ADCY3O60266 1144 aa16.82■□□□□ 0.28
LIG1-218ENST00000599322 FLT3LGP49771 235 aa16.82■□□□□ 0.28
LIG1-218ENST00000599322 PLEKHM2Q8IWE5 1019 aa16.82■□□□□ 0.28
LIG1-218ENST00000599322 VCPKMTQ9H867 229 aa16.82■□□□□ 0.28
LIG1-218ENST00000599322 BAZ2AQ9UIF9 1905 aaKnown RBP16.82■□□□□ 0.28
LIG1-218ENST00000599322 TSPY3P0CV98 308 aa16.81■□□□□ 0.28
LIG1-218ENST00000599322 TSPY8P0CW00 308 aa16.81■□□□□ 0.28
LIG1-218ENST00000599322 EEF2P13639 858 aaKnown RBP16.81■□□□□ 0.28
LIG1-218ENST00000599322 ERVK-9P63128 1117 aa16.81■□□□□ 0.28
LIG1-218ENST00000599322 ERVK-24P63145 666 aa16.81■□□□□ 0.28
LIG1-218ENST00000599322 PPARAQ07869 468 aa16.81■□□□□ 0.28
LIG1-218ENST00000599322 IRF5Q13568 498 aa16.81■□□□□ 0.28
LIG1-218ENST00000599322 WDR78Q5VTH9 848 aa16.81■□□□□ 0.28
LIG1-218ENST00000599322 EPB41L4AQ9HCS5 686 aaPredicted RBP16.81■□□□□ 0.28
LIG1-218ENST00000599322 IVNS1ABPQ9Y6Y0 642 aa16.81■□□□□ 0.28
LIG1-218ENST00000599322 A0A1W2PRG0 241 aa16.8■□□□□ 0.28
LIG1-218ENST00000599322 WDR46O15213 610 aaKnown RBP16.8■□□□□ 0.28
LIG1-218ENST00000599322 HABP4Q5JVS0 413 aaKnown RBP16.8■□□□□ 0.28
LIG1-218ENST00000599322 NKX2-3Q8TAU0 364 aa16.8■□□□□ 0.28
LIG1-218ENST00000599322 PXYLP1Q8TE99 480 aa16.8■□□□□ 0.28
LIG1-218ENST00000599322 SOCS4Q8WXH5 440 aa16.8■□□□□ 0.28
LIG1-218ENST00000599322 NUDT12Q9BQG2 462 aa16.8■□□□□ 0.28
LIG1-218ENST00000599322 RBPJLQ9UBG7 517 aa16.8■□□□□ 0.28
LIG1-218ENST00000599322 GABRQQ9UN88 632 aa16.8■□□□□ 0.28
LIG1-218ENST00000599322 ROBO3Q96MS0 1386 aa16.79■□□□□ 0.28
LIG1-218ENST00000599322 MYH8P13535 1937 aa16.79■□□□□ 0.28
LIG1-218ENST00000599322 FLOT1O75955 427 aa16.79■□□□□ 0.28
LIG1-218ENST00000599322 SDSP20132 328 aa16.79■□□□□ 0.28
LIG1-218ENST00000599322 RASA1P20936 1047 aa16.79■□□□□ 0.28
LIG1-218ENST00000599322 NMIQ13287 307 aaPredicted RBP16.79■□□□□ 0.28
LIG1-218ENST00000599322 MTFR1Q15390 333 aa16.79■□□□□ 0.28
LIG1-218ENST00000599322 SAMD1Q6SPF0 538 aaPredicted RBP16.79■□□□□ 0.28
LIG1-218ENST00000599322 CCDC129Q6ZRS4 1044 aa16.79■□□□□ 0.28
LIG1-218ENST00000599322 TRMT44Q8IYL2 757 aaKnown RBP16.79■□□□□ 0.28
LIG1-218ENST00000599322 MB21D1Q8N884 522 aa16.79■□□□□ 0.28
LIG1-218ENST00000599322 TOMM22Q9NS69 142 aa16.79■□□□□ 0.28
LIG1-218ENST00000599322 NYAP2Q9P242 653 aa16.79■□□□□ 0.28
LIG1-218ENST00000599322 CTDP1Q9Y5B0 961 aaPredicted RBP16.79■□□□□ 0.28
LIG1-218ENST00000599322 TSPY2A6NKD2 308 aa16.78■□□□□ 0.28
LIG1-218ENST00000599322 PRDM1O75626 825 aa16.78■□□□□ 0.28
LIG1-218ENST00000599322 CAPN2P17655 700 aa16.78■□□□□ 0.28
LIG1-218ENST00000599322 ALX1Q15699 326 aa16.78■□□□□ 0.28
LIG1-218ENST00000599322 LBX2Q6XYB7 198 aa16.78■□□□□ 0.28
LIG1-218ENST00000599322 PLEKHH3Q7Z736 793 aa16.78■□□□□ 0.28
LIG1-218ENST00000599322 SPICE1Q8N0Z3 855 aa16.78■□□□□ 0.28
LIG1-218ENST00000599322 SHISA4Q96DD7 197 aa16.78■□□□□ 0.28
LIG1-218ENST00000599322 CLIP2Q9UDT6 1046 aa16.78■□□□□ 0.28
LIG1-218ENST00000599322 CCDC171Q6TFL3 1326 aa16.77■□□□□ 0.28
LIG1-218ENST00000599322 SMIM22K7EJ46 135 aa16.77■□□□□ 0.28
LIG1-218ENST00000599322 TTLL1O95922 423 aa16.77■□□□□ 0.28
LIG1-218ENST00000599322 TFAP4Q01664 338 aa16.77■□□□□ 0.28
LIG1-218ENST00000599322 FAM227BQ96M60 508 aa16.77■□□□□ 0.28
LIG1-218ENST00000599322 RNF208Q9H0X6 261 aa16.77■□□□□ 0.28
LIG1-218ENST00000599322 ISY1Q9ULR0 285 aaKnown RBP16.77■□□□□ 0.28
LIG1-218ENST00000599322 CEP290O15078 2479 aa16.76■□□□□ 0.27
LIG1-218ENST00000599322 A0A0D9SFI3 127 aa16.76■□□□□ 0.27
LIG1-218ENST00000599322 SPDYE16A6NNV3 312 aaPredicted RBP16.76■□□□□ 0.27
LIG1-218ENST00000599322 RANBP6O60518 1105 aaKnown RBP16.76■□□□□ 0.27
LIG1-218ENST00000599322 CYP2B6P20813 491 aa16.76■□□□□ 0.27
LIG1-218ENST00000599322 DSG3P32926 999 aa16.76■□□□□ 0.27
LIG1-218ENST00000599322 RGS2P41220 211 aa16.76■□□□□ 0.27
LIG1-218ENST00000599322 PLS1Q14651 629 aa16.76■□□□□ 0.27
LIG1-218ENST00000599322 CWC27Q6UX04 472 aaKnown RBP16.76■□□□□ 0.27
LIG1-218ENST00000599322 CLEC10AQ8IUN9 316 aa16.76■□□□□ 0.27
LIG1-218ENST00000599322 NEDD1Q8NHV4 660 aa16.76■□□□□ 0.27
LIG1-218ENST00000599322 TXNRD2Q9NNW7 524 aa16.76■□□□□ 0.27
LIG1-218ENST00000599322 SLC5A4Q9NY91 659 aa16.76■□□□□ 0.27
LIG1-218ENST00000599322 SYNPO2Q9UMS6 1093 aa16.76■□□□□ 0.27
LIG1-218ENST00000599322 F5H6K3 240 aa16.75■□□□□ 0.27
LIG1-218ENST00000599322 HMGCRP04035 888 aa16.75■□□□□ 0.27
LIG1-218ENST00000599322 INHAP05111 366 aa16.75■□□□□ 0.27
LIG1-218ENST00000599322 HSPD1P10809 573 aaKnown RBP16.75■□□□□ 0.27
LIG1-218ENST00000599322 CCL5P13501 91 aa16.75■□□□□ 0.27
LIG1-218ENST00000599322 ELNP15502 786 aa16.75■□□□□ 0.27
LIG1-218ENST00000599322 CTDSPL2Q05D32 466 aa16.75■□□□□ 0.27
LIG1-218ENST00000599322 KLRC3Q07444 240 aa16.75■□□□□ 0.27
LIG1-218ENST00000599322 Q3C1V9 767 aa16.75■□□□□ 0.27
LIG1-218ENST00000599322 GPR142Q7Z601 462 aa16.75■□□□□ 0.27
LIG1-218ENST00000599322 SIAH1Q8IUQ4 282 aa16.75■□□□□ 0.27
LIG1-218ENST00000599322 RUFY2Q8WXA3 655 aa16.75■□□□□ 0.27
LIG1-218ENST00000599322 RNF41Q9H4P4 317 aaPredicted RBP16.75■□□□□ 0.27
LIG1-218ENST00000599322 ANAPC4Q9UJX5 808 aa16.75■□□□□ 0.27
LIG1-218ENST00000599322 ALPK3Q96L96 1907 aa16.74■□□□□ 0.27
LIG1-218ENST00000599322 STRNO43815 780 aa16.74■□□□□ 0.27
LIG1-218ENST00000599322 FGAP02671 866 aa16.74■□□□□ 0.27
LIG1-218ENST00000599322 GJB1P08034 283 aa16.74■□□□□ 0.27
LIG1-218ENST00000599322 PCP11498 1178 aaKnown RBP16.74■□□□□ 0.27
LIG1-218ENST00000599322 XRCC5P13010 732 aaKnown RBP16.74■□□□□ 0.27
LIG1-218ENST00000599322 ZKSCAN1P17029 563 aaPredicted RBP16.74■□□□□ 0.27
LIG1-218ENST00000599322 FAM47AQ5JRC9 791 aa16.74■□□□□ 0.27
LIG1-218ENST00000599322 RRP12Q5JTH9 1297 aaKnown RBP16.74■□□□□ 0.27
LIG1-218ENST00000599322 CEP95Q96GE4 821 aa16.74■□□□□ 0.27
LIG1-218ENST00000599322 MROH8Q9H579 483 aa16.74■□□□□ 0.27
LIG1-218ENST00000599322 MTMR4Q9NYA4 1195 aa16.74■□□□□ 0.27
LIG1-218ENST00000599322 CTNNA3Q9UI47 895 aa16.74■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms