RNA–Protein interactions for RNA: ENST00000598907.5

SHKBP1-218, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 738 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-218ENST00000598907 ADORA2AP29274 412 aa16.96■□□□□ 0.31
SHKBP1-218ENST00000598907 SH3RF3Q8TEJ3 882 aaPredicted RBP16.96■□□□□ 0.31
SHKBP1-218ENST00000598907 CXXC1Q9P0U4 656 aaPredicted RBP16.96■□□□□ 0.31
SHKBP1-218ENST00000598907 PI4KBQ9UBF8 816 aa16.96■□□□□ 0.31
SHKBP1-218ENST00000598907 PHF24Q9UPV7 400 aa16.96■□□□□ 0.31
SHKBP1-218ENST00000598907 PCDHB15Q9Y5E8 787 aa16.96■□□□□ 0.31
SHKBP1-218ENST00000598907 CHD9Q3L8U1 2897 aa16.96■□□□□ 0.31
SHKBP1-218ENST00000598907 PIEZO1Q92508 2521 aa16.96■□□□□ 0.3
SHKBP1-218ENST00000598907 USP17L15C9J2P7 530 aa16.95■□□□□ 0.3
SHKBP1-218ENST00000598907 USP17L13C9JLJ4 530 aa16.95■□□□□ 0.3
SHKBP1-218ENST00000598907 USP17L11C9JVI0 530 aa16.95■□□□□ 0.3
SHKBP1-218ENST00000598907 USP17L18D6R9N7 530 aa16.95■□□□□ 0.3
SHKBP1-218ENST00000598907 USP17L22D6RA61 530 aa16.95■□□□□ 0.3
SHKBP1-218ENST00000598907 USP17L17D6RBQ6 530 aa16.95■□□□□ 0.3
SHKBP1-218ENST00000598907 USP17L19D6RCP7 530 aa16.95■□□□□ 0.3
SHKBP1-218ENST00000598907 USP17L20D6RJB6 530 aa16.95■□□□□ 0.3
SHKBP1-218ENST00000598907 USP17L24Q0WX57 530 aa16.95■□□□□ 0.3
SHKBP1-218ENST00000598907 SKIV2LQ15477 1246 aaKnown RBP16.95■□□□□ 0.3
SHKBP1-218ENST00000598907 SLC44A5Q8NCS7 719 aa16.95■□□□□ 0.3
SHKBP1-218ENST00000598907 SNX27Q96L92 541 aa16.95■□□□□ 0.3
SHKBP1-218ENST00000598907 C1orf115Q9H7X2 142 aa16.95■□□□□ 0.3
SHKBP1-218ENST00000598907 XPNPEP3Q9NQH7 507 aa16.95■□□□□ 0.3
SHKBP1-218ENST00000598907 MYO9BQ13459 2157 aa16.94■□□□□ 0.3
SHKBP1-218ENST00000598907 A0A1W2PQ45 241 aaPredicted RBP16.94■□□□□ 0.3
SHKBP1-218ENST00000598907 A0A1W2PQY0 241 aa16.94■□□□□ 0.3
SHKBP1-218ENST00000598907 GSTO1P78417 241 aa16.94■□□□□ 0.3
SHKBP1-218ENST00000598907 MTX1Q13505 466 aa16.94■□□□□ 0.3
SHKBP1-218ENST00000598907 OLFML2BQ68BL8 750 aa16.94■□□□□ 0.3
SHKBP1-218ENST00000598907 MAPKAPK5Q8IW41 473 aa16.94■□□□□ 0.3
SHKBP1-218ENST00000598907 NKX2-4Q9H2Z4 354 aa16.94■□□□□ 0.3
SHKBP1-218ENST00000598907 RAI14Q9P0K7 980 aa16.94■□□□□ 0.3
SHKBP1-218ENST00000598907 GBF1Q92538 1859 aa16.93■□□□□ 0.3
SHKBP1-218ENST00000598907 APBB1O00213 710 aa16.93■□□□□ 0.3
SHKBP1-218ENST00000598907 PGK1P00558 417 aa16.93■□□□□ 0.3
SHKBP1-218ENST00000598907 IGHA2P01877 340 aa16.93■□□□□ 0.3
SHKBP1-218ENST00000598907 ATP8B2P98198 1209 aa16.93■□□□□ 0.3
SHKBP1-218ENST00000598907 FAAP100Q0VG06 881 aa16.93■□□□□ 0.3
SHKBP1-218ENST00000598907 CEP85Q6P2H3 762 aa16.93■□□□□ 0.3
SHKBP1-218ENST00000598907 PI16Q6UXB8 463 aa16.93■□□□□ 0.3
SHKBP1-218ENST00000598907 TBC1D9Q6ZT07 1266 aa16.93■□□□□ 0.3
SHKBP1-218ENST00000598907 SIRT2Q8IXJ6 389 aa16.93■□□□□ 0.3
SHKBP1-218ENST00000598907 RPAP2Q8IXW5 612 aaPredicted RBP16.93■□□□□ 0.3
SHKBP1-218ENST00000598907 MSRAQ9UJ68 235 aa16.93■□□□□ 0.3
SHKBP1-218ENST00000598907 MUC6Q6W4X9 2439 aa16.93■□□□□ 0.3
SHKBP1-218ENST00000598907 PDS5AQ29RF7 1337 aaKnown RBP16.93■□□□□ 0.3
SHKBP1-218ENST00000598907 XIRP2A4UGR9 3374 aa16.92■□□□□ 0.3
SHKBP1-218ENST00000598907 CIAO1O76071 339 aa16.92■□□□□ 0.3
SHKBP1-218ENST00000598907 GH2P01242 217 aa16.92■□□□□ 0.3
SHKBP1-218ENST00000598907 LDHCP07864 332 aa16.92■□□□□ 0.3
SHKBP1-218ENST00000598907 ACRP10323 421 aa16.92■□□□□ 0.3
SHKBP1-218ENST00000598907 RARBP10826 455 aa16.92■□□□□ 0.3
SHKBP1-218ENST00000598907 VCAM1P19320 739 aa16.92■□□□□ 0.3
SHKBP1-218ENST00000598907 AAK1Q2M2I8 961 aa16.92■□□□□ 0.3
SHKBP1-218ENST00000598907 LENG1Q96BZ8 264 aaPredicted RBP16.92■□□□□ 0.3
SHKBP1-218ENST00000598907 NSUN4Q96CB9 384 aaKnown RBP16.92■□□□□ 0.3
SHKBP1-218ENST00000598907 SAP30BPQ9UHR5 308 aaKnown RBP16.92■□□□□ 0.3
SHKBP1-218ENST00000598907 LRRC37A2A6NM11 1700 aa16.92■□□□□ 0.3
SHKBP1-218ENST00000598907 SPDYE16A6NNV3 312 aaPredicted RBP16.91■□□□□ 0.3
SHKBP1-218ENST00000598907 DCDC2CA8MYV0 355 aa16.91■□□□□ 0.3
SHKBP1-218ENST00000598907 MAP4K4O95819 1239 aaPredicted RBP16.91■□□□□ 0.3
SHKBP1-218ENST00000598907 RAB30Q15771 203 aa16.91■□□□□ 0.3
SHKBP1-218ENST00000598907 TMEM240Q5SV17 173 aa16.91■□□□□ 0.3
SHKBP1-218ENST00000598907 CATSPERGQ6ZRH7 1159 aa16.91■□□□□ 0.3
SHKBP1-218ENST00000598907 C16orf59Q7L2K0 433 aa16.91■□□□□ 0.3
SHKBP1-218ENST00000598907 RNF180Q86T96 592 aa16.91■□□□□ 0.3
SHKBP1-218ENST00000598907 NOL10Q9BSC4 688 aaKnown RBP16.91■□□□□ 0.3
SHKBP1-218ENST00000598907 DHX36Q9H2U1 1008 aaKnown RBP16.91■□□□□ 0.3
SHKBP1-218ENST00000598907 PALD1Q9ULE6 856 aa16.91■□□□□ 0.3
SHKBP1-218ENST00000598907 PA2G4Q9UQ80 394 aaKnown RBP16.91■□□□□ 0.3
SHKBP1-218ENST00000598907 GTF3C3Q9Y5Q9 886 aa16.91■□□□□ 0.3
SHKBP1-218ENST00000598907 REV3LO60673 3130 aa16.91■□□□□ 0.3
SHKBP1-218ENST00000598907 CDK5RAP2Q96SN8 1893 aa16.9■□□□□ 0.3
SHKBP1-218ENST00000598907 COBLO75128 1261 aa16.9■□□□□ 0.3
SHKBP1-218ENST00000598907 TIMP1P01033 207 aa16.9■□□□□ 0.3
SHKBP1-218ENST00000598907 TIMM10P62072 90 aa16.9■□□□□ 0.3
SHKBP1-218ENST00000598907 PPIGQ13427 754 aaKnown RBP eCLIP16.9■□□□□ 0.3
SHKBP1-218ENST00000598907 POLA2Q14181 598 aa16.9■□□□□ 0.3
SHKBP1-218ENST00000598907 CCDC174Q6PII3 467 aa16.9■□□□□ 0.3
SHKBP1-218ENST00000598907 TGFBRAP1Q8WUH2 860 aa16.9■□□□□ 0.3
SHKBP1-218ENST00000598907 C12orf42Q96LP6 360 aa16.9■□□□□ 0.3
SHKBP1-218ENST00000598907 MOV10L1Q9BXT6 1211 aaKnown RBP16.9■□□□□ 0.3
SHKBP1-218ENST00000598907 RPAP3Q9H6T3 665 aaPredicted RBP16.9■□□□□ 0.3
SHKBP1-218ENST00000598907 SLC28A3Q9HAS3 691 aa16.9■□□□□ 0.3
SHKBP1-218ENST00000598907 C11orf16Q9NQ32 467 aa16.9■□□□□ 0.3
SHKBP1-218ENST00000598907 PPP4R2Q9NY27 417 aa16.9■□□□□ 0.3
SHKBP1-218ENST00000598907 AATFQ9NY61 560 aaKnown RBP eCLIP16.9■□□□□ 0.3
SHKBP1-218ENST00000598907 FLT1P17948 1338 aa16.9■□□□□ 0.3
SHKBP1-218ENST00000598907 PNMA6EA0A0J9YXQ4 647 aa16.89■□□□□ 0.29
SHKBP1-218ENST00000598907 CSF2RAP15509 400 aa16.89■□□□□ 0.29
SHKBP1-218ENST00000598907 IL15P40933 162 aaPredicted RBP16.89■□□□□ 0.29
SHKBP1-218ENST00000598907 HDAC1Q13547 482 aaPredicted RBP16.89■□□□□ 0.29
SHKBP1-218ENST00000598907 RAB3GAP1Q15042 981 aa16.89■□□□□ 0.29
SHKBP1-218ENST00000598907 MFSD5Q6N075 450 aa16.89■□□□□ 0.29
SHKBP1-218ENST00000598907 ZNF365Q70YC5 407 aa16.89■□□□□ 0.29
SHKBP1-218ENST00000598907 SSH3Q8TE77 659 aa16.89■□□□□ 0.29
SHKBP1-218ENST00000598907 KHSRPQ92945 711 aaKnown RBP eCLIP16.89■□□□□ 0.29
SHKBP1-218ENST00000598907 PPP1R12CQ9BZL4 782 aa16.89■□□□□ 0.29
SHKBP1-218ENST00000598907 STARD7Q9NQZ5 370 aa16.89■□□□□ 0.29
SHKBP1-218ENST00000598907 HMG20BQ9P0W2 317 aa16.89■□□□□ 0.29
SHKBP1-218ENST00000598907 YBX2Q9Y2T7 364 aaKnown RBP16.89■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 88.3 ms