RNA–Protein interactions for RNA: ENST00000598471.1

UPF1-206, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 582 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-206ENST00000598471 FSTL1Q12841 308 aa17.99■□□□□ 0.47
UPF1-206ENST00000598471 CLEC10AQ8IUN9 316 aa17.99■□□□□ 0.47
UPF1-206ENST00000598471 LRRC47Q8N1G4 583 aaKnown RBP17.99■□□□□ 0.47
UPF1-206ENST00000598471 FAM184AQ8NB25 1140 aa17.99■□□□□ 0.47
UPF1-206ENST00000598471 MKL1Q969V6 931 aa17.99■□□□□ 0.47
UPF1-206ENST00000598471 CDCA5Q96FF9 252 aa17.99■□□□□ 0.47
UPF1-206ENST00000598471 WRNIP1Q96S55 665 aa17.99■□□□□ 0.47
UPF1-206ENST00000598471 ZNF112Q9UJU3 913 aa17.99■□□□□ 0.47
UPF1-206ENST00000598471 SSC5DA1L4H1 1573 aa17.99■□□□□ 0.47
UPF1-206ENST00000598471 PDIA4P13667 645 aaKnown RBP17.98■□□□□ 0.47
UPF1-206ENST00000598471 CDC27P30260 824 aa17.98■□□□□ 0.47
UPF1-206ENST00000598471 ADD1P35611 737 aaKnown RBP17.98■□□□□ 0.47
UPF1-206ENST00000598471 FMR1Q06787 632 aaKnown RBP eCLIP17.98■□□□□ 0.473e-6■■■□□ 17.2
UPF1-206ENST00000598471 GRM4Q14833 912 aa17.98■□□□□ 0.47
UPF1-206ENST00000598471 SHROOM1Q2M3G4 852 aaPredicted RBP17.98■□□□□ 0.47
UPF1-206ENST00000598471 DLK2Q6UY11 383 aa17.98■□□□□ 0.47
UPF1-206ENST00000598471 TRIM22Q8IYM9 498 aa17.98■□□□□ 0.47
UPF1-206ENST00000598471 SCYL3Q8IZE3 742 aa17.98■□□□□ 0.47
UPF1-206ENST00000598471 SMARCC2Q8TAQ2 1214 aa17.98■□□□□ 0.47
UPF1-206ENST00000598471 LZTS2Q9BRK4 669 aa17.98■□□□□ 0.47
UPF1-206ENST00000598471 GLIS2Q9BZE0 524 aaPredicted RBP17.98■□□□□ 0.47
UPF1-206ENST00000598471 PICK1Q9NRD5 415 aa17.98■□□□□ 0.47
UPF1-206ENST00000598471 CHMP5Q9NZZ3 219 aa17.98■□□□□ 0.47
UPF1-206ENST00000598471 JAK2O60674 1132 aa17.97■□□□□ 0.47
UPF1-206ENST00000598471 PARP1P09874 1014 aaKnown RBP17.97■□□□□ 0.47
UPF1-206ENST00000598471 IFNAR1P17181 557 aa17.97■□□□□ 0.47
UPF1-206ENST00000598471 IREB2P48200 963 aaKnown RBP17.97■□□□□ 0.47
UPF1-206ENST00000598471 JAG1P78504 1218 aa17.97■□□□□ 0.47
UPF1-206ENST00000598471 ASPRV1Q53RT3 343 aa17.97■□□□□ 0.47
UPF1-206ENST00000598471 KLRG1Q96E93 195 aa17.97■□□□□ 0.47
UPF1-206ENST00000598471 MTMR7Q9Y216 660 aa17.97■□□□□ 0.47
UPF1-206ENST00000598471 CTDNEP1O95476 244 aa17.96■□□□□ 0.47
UPF1-206ENST00000598471 INPP5BP32019 993 aa17.96■□□□□ 0.47
UPF1-206ENST00000598471 DDIT3P35638 169 aa17.96■□□□□ 0.47
UPF1-206ENST00000598471 NUCB2P80303 420 aa17.96■□□□□ 0.47
UPF1-206ENST00000598471 AKAP17AQ02040 695 aaKnown RBP17.96■□□□□ 0.47
UPF1-206ENST00000598471 SSRP1Q08945 709 aaKnown RBP17.96■□□□□ 0.47
UPF1-206ENST00000598471 TMTC3Q6ZXV5 915 aa17.96■□□□□ 0.47
UPF1-206ENST00000598471 GMCL1P1Q8NEA9 526 aa17.96■□□□□ 0.47
UPF1-206ENST00000598471 DCAF4Q8WV16 495 aa17.96■□□□□ 0.47
UPF1-206ENST00000598471 DDX11Q96FC9 970 aa17.96■□□□□ 0.47
UPF1-206ENST00000598471 AS3MTQ9HBK9 375 aa17.96■□□□□ 0.47
UPF1-206ENST00000598471 GOPCQ9HD26 462 aa17.96■□□□□ 0.47
UPF1-206ENST00000598471 FAM217BQ9NTX9 383 aaPredicted RBP17.96■□□□□ 0.47
UPF1-206ENST00000598471 STK36Q9NRP7 1315 aa17.96■□□□□ 0.46
UPF1-206ENST00000598471 POLR2AP24928 1970 aaKnown RBP17.95■□□□□ 0.46
UPF1-206ENST00000598471 USP17L5A8MUK1 530 aa17.95■□□□□ 0.46
UPF1-206ENST00000598471 PDHBP11177 359 aa17.95■□□□□ 0.46
UPF1-206ENST00000598471 NOL9Q5SY16 702 aaKnown RBP17.95■□□□□ 0.46
UPF1-206ENST00000598471 GPATCH4Q5T3I0 446 aaKnown RBP17.95■□□□□ 0.46
UPF1-206ENST00000598471 DDX55Q8NHQ9 600 aaKnown RBP eCLIP17.95■□□□□ 0.46
UPF1-206ENST00000598471 WASF1Q92558 559 aa17.95■□□□□ 0.46
UPF1-206ENST00000598471 FEZ1Q99689 392 aa17.95■□□□□ 0.46
UPF1-206ENST00000598471 RBM27Q9P2N5 1060 aaKnown RBP17.95■□□□□ 0.46
UPF1-206ENST00000598471 ORC3Q9UBD5 711 aaPredicted RBP17.95■□□□□ 0.46
UPF1-206ENST00000598471 TMX2Q9Y320 296 aa17.95■□□□□ 0.46
UPF1-206ENST00000598471 DOCK1Q14185 1865 aa17.95■□□□□ 0.46
UPF1-206ENST00000598471 ATAD5Q96QE3 1844 aa17.94■□□□□ 0.46
UPF1-206ENST00000598471 PALM3A6NDB9 673 aaPredicted RBP17.94■□□□□ 0.46
UPF1-206ENST00000598471 TRAF5O00463 557 aa17.94■□□□□ 0.46
UPF1-206ENST00000598471 RAD21O60216 631 aa17.94■□□□□ 0.46
UPF1-206ENST00000598471 USP2O75604 605 aaPredicted RBP17.94■□□□□ 0.46
UPF1-206ENST00000598471 FMNL1O95466 1100 aaPredicted RBP17.94■□□□□ 0.46
UPF1-206ENST00000598471 SNHG28P0DPA3 235 aa17.94■□□□□ 0.46
UPF1-206ENST00000598471 MAP3K9P80192 1104 aa17.94■□□□□ 0.46
UPF1-206ENST00000598471 PRKG1Q13976 671 aa17.94■□□□□ 0.46
UPF1-206ENST00000598471 TTLL12Q14166 644 aaPredicted RBP17.94■□□□□ 0.46
UPF1-206ENST00000598471 NTRK3Q16288 839 aa17.94■□□□□ 0.46
UPF1-206ENST00000598471 CCDC96Q2M329 555 aa17.94■□□□□ 0.46
UPF1-206ENST00000598471 SLFN13Q68D06 897 aa17.94■□□□□ 0.46
UPF1-206ENST00000598471 ARMC9Q7Z3E5 817 aa17.94■□□□□ 0.46
UPF1-206ENST00000598471 SLC26A6Q9BXS9 759 aa17.94■□□□□ 0.46
UPF1-206ENST00000598471 RNF26Q9BY78 433 aaPredicted RBP17.94■□□□□ 0.46
UPF1-206ENST00000598471 MAD2L2Q9UI95 211 aa17.94■□□□□ 0.46
UPF1-206ENST00000598471 CSADQ9Y600 493 aa17.94■□□□□ 0.46
UPF1-206ENST00000598471 MYH4Q9Y623 1939 aa17.94■□□□□ 0.46
UPF1-206ENST00000598471 PLEKHA8P1O95397 391 aa17.93■□□□□ 0.46
UPF1-206ENST00000598471 LARP1BQ659C4 914 aaKnown RBP17.93■□□□□ 0.46
UPF1-206ENST00000598471 SIAH1Q8IUQ4 282 aa17.93■□□□□ 0.46
UPF1-206ENST00000598471 PHKBQ93100 1093 aa17.93■□□□□ 0.46
UPF1-206ENST00000598471 ZKSCAN4Q969J2 545 aaPredicted RBP17.93■□□□□ 0.46
UPF1-206ENST00000598471 GMCL1Q96IK5 515 aa17.93■□□□□ 0.46
UPF1-206ENST00000598471 ISY1Q9ULR0 285 aaKnown RBP17.93■□□□□ 0.46
UPF1-206ENST00000598471 KLRF2D3W0D1 207 aa17.92■□□□□ 0.46
UPF1-206ENST00000598471 F5H6K3 240 aa17.92■□□□□ 0.46
UPF1-206ENST00000598471 DEXIO95424 95 aa17.92■□□□□ 0.46
UPF1-206ENST00000598471 SMARCA1P28370 1054 aa17.92■□□□□ 0.46
UPF1-206ENST00000598471 SLC1A4P43007 532 aa17.92■□□□□ 0.46
UPF1-206ENST00000598471 KLRC3Q07444 240 aa17.92■□□□□ 0.46
UPF1-206ENST00000598471 ZNF543Q08ER8 600 aa17.92■□□□□ 0.46
UPF1-206ENST00000598471 USP17L2Q6R6M4 530 aa17.92■□□□□ 0.46
UPF1-206ENST00000598471 ACER1Q8TDN7 264 aa17.92■□□□□ 0.46
UPF1-206ENST00000598471 WDR18Q9BV38 432 aa17.92■□□□□ 0.46
UPF1-206ENST00000598471 VCPKMTQ9H867 229 aa17.92■□□□□ 0.46
UPF1-206ENST00000598471 PASKQ96RG2 1323 aa17.92■□□□□ 0.46
UPF1-206ENST00000598471 WDR33Q9C0J8 1336 aaKnown RBP17.92■□□□□ 0.46
UPF1-206ENST00000598471 A0A1W2PRG0 241 aa17.91■□□□□ 0.46
UPF1-206ENST00000598471 H3BQV1 296 aa17.91■□□□□ 0.46
UPF1-206ENST00000598471 STX6O43752 255 aa17.91■□□□□ 0.46
UPF1-206ENST00000598471 NDUFB10O96000 172 aa17.91■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 104.8 ms