RNA–Protein interactions for RNA: ENST00000598355.1

TRIM28-213, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 714 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-213ENST00000598355 DIAPH3Q9NSV4 1193 aa19.21■□□□□ 0.67
TRIM28-213ENST00000598355 NYAP2Q9P242 653 aa19.21■□□□□ 0.67
TRIM28-213ENST00000598355 SRRDQ9UH36 339 aa19.21■□□□□ 0.67
TRIM28-213ENST00000598355 TACC3Q9Y6A5 838 aa19.21■□□□□ 0.67
TRIM28-213ENST00000598355 RAD50Q92878 1312 aa19.21■□□□□ 0.67
TRIM28-213ENST00000598355 ORC4O43929 436 aa19.2■□□□□ 0.66
TRIM28-213ENST00000598355 FCGRTP55899 365 aa19.2■□□□□ 0.66
TRIM28-213ENST00000598355 CWC27Q6UX04 472 aaKnown RBP19.2■□□□□ 0.66
TRIM28-213ENST00000598355 IL25Q9H293 177 aa19.2■□□□□ 0.66
TRIM28-213ENST00000598355 RPAP3Q9H6T3 665 aaPredicted RBP19.2■□□□□ 0.66
TRIM28-213ENST00000598355 TXNRD2Q9NNW7 524 aa19.2■□□□□ 0.66
TRIM28-213ENST00000598355 SYNPO2Q9UMS6 1093 aa19.2■□□□□ 0.66
TRIM28-213ENST00000598355 PTCH2Q9Y6C5 1203 aa19.2■□□□□ 0.66
TRIM28-213ENST00000598355 SPDYE16A6NNV3 312 aaPredicted RBP19.19■□□□□ 0.66
TRIM28-213ENST00000598355 PRDM1O75626 825 aa19.19■□□□□ 0.66
TRIM28-213ENST00000598355 SLC3A2P08195 630 aaKnown RBP19.19■□□□□ 0.66
TRIM28-213ENST00000598355 STK11IPQ8N1F8 1099 aa19.19■□□□□ 0.66
TRIM28-213ENST00000598355 NEDD1Q8NHV4 660 aa19.19■□□□□ 0.66
TRIM28-213ENST00000598355 NBPF3Q9H094 633 aa19.19■□□□□ 0.66
TRIM28-213ENST00000598355 RBPJLQ9UBG7 517 aa19.19■□□□□ 0.66
TRIM28-213ENST00000598355 MYPNQ86TC9 1320 aa19.19■□□□□ 0.66
TRIM28-213ENST00000598355 WDR46O15213 610 aaKnown RBP19.18■□□□□ 0.66
TRIM28-213ENST00000598355 CTDSPL2Q05D32 466 aa19.18■□□□□ 0.66
TRIM28-213ENST00000598355 DSCC1Q9BVC3 393 aa19.18■□□□□ 0.66
TRIM28-213ENST00000598355 MTMR4Q9NYA4 1195 aa19.18■□□□□ 0.66
TRIM28-213ENST00000598355 CAPN15O75808 1086 aa19.17■□□□□ 0.66
TRIM28-213ENST00000598355 CNMDO75829 334 aa19.17■□□□□ 0.66
TRIM28-213ENST00000598355 NOVP48745 357 aa19.17■□□□□ 0.66
TRIM28-213ENST00000598355 ERVK-9P63128 1117 aa19.17■□□□□ 0.66
TRIM28-213ENST00000598355 ERVK-24P63145 666 aa19.17■□□□□ 0.66
TRIM28-213ENST00000598355 ZNF444Q8N0Y2 327 aaPredicted RBP19.17■□□□□ 0.66
TRIM28-213ENST00000598355 MKL1Q969V6 931 aa19.17■□□□□ 0.66
TRIM28-213ENST00000598355 CEP95Q96GE4 821 aa19.17■□□□□ 0.66
TRIM28-213ENST00000598355 RABGAP1Q9Y3P9 1069 aa19.17■□□□□ 0.66
TRIM28-213ENST00000598355 CCDC85CA6NKD9 419 aa19.16■□□□□ 0.66
TRIM28-213ENST00000598355 FMNL1O95466 1100 aaPredicted RBP19.16■□□□□ 0.66
TRIM28-213ENST00000598355 PCP11498 1178 aaKnown RBP19.16■□□□□ 0.66
TRIM28-213ENST00000598355 CHMLP26374 656 aa19.16■□□□□ 0.66
TRIM28-213ENST00000598355 HOXD10P28358 340 aa19.16■□□□□ 0.66
TRIM28-213ENST00000598355 PRKCZQ05513 592 aa19.16■□□□□ 0.66
TRIM28-213ENST00000598355 GOPCQ9HD26 462 aa19.16■□□□□ 0.66
TRIM28-213ENST00000598355 TNPO2O14787 897 aaKnown RBP19.15■□□□□ 0.66
TRIM28-213ENST00000598355 PEX10O60683 326 aa19.15■□□□□ 0.66
TRIM28-213ENST00000598355 TSPY3P0CV98 308 aa19.15■□□□□ 0.66
TRIM28-213ENST00000598355 TSPY8P0CW00 308 aa19.15■□□□□ 0.66
TRIM28-213ENST00000598355 RGS19P49795 217 aa19.15■□□□□ 0.66
TRIM28-213ENST00000598355 IRF5Q13568 498 aa19.15■□□□□ 0.66
TRIM28-213ENST00000598355 GPRC5AQ8NFJ5 357 aa19.15■□□□□ 0.66
TRIM28-213ENST00000598355 STAG1Q8WVM7 1258 aa19.15■□□□□ 0.66
TRIM28-213ENST00000598355 ZNF333Q96JL9 665 aa19.15■□□□□ 0.66
TRIM28-213ENST00000598355 GABRQQ9UN88 632 aa19.15■□□□□ 0.66
TRIM28-213ENST00000598355 TTLL1O95922 423 aa19.14■□□□□ 0.65
TRIM28-213ENST00000598355 TFAP4Q01664 338 aa19.14■□□□□ 0.65
TRIM28-213ENST00000598355 COG2Q14746 738 aa19.14■□□□□ 0.65
TRIM28-213ENST00000598355 FAM47AQ5JRC9 791 aa19.14■□□□□ 0.65
TRIM28-213ENST00000598355 TBC1D10CQ8IV04 446 aa19.14■□□□□ 0.65
TRIM28-213ENST00000598355 SPICE1Q8N0Z3 855 aa19.14■□□□□ 0.65
TRIM28-213ENST00000598355 INCENPQ9NQS7 918 aa19.14■□□□□ 0.65
TRIM28-213ENST00000598355 BTBD7Q9P203 1132 aa19.14■□□□□ 0.65
TRIM28-213ENST00000598355 ADAMTS5Q9UNA0 930 aa19.14■□□□□ 0.65
TRIM28-213ENST00000598355 ZNFX1Q9P2E3 1918 aaKnown RBP19.13■□□□□ 0.65
TRIM28-213ENST00000598355 DSG3P32926 999 aa19.13■□□□□ 0.65
TRIM28-213ENST00000598355 NT5C2P49902 561 aa19.13■□□□□ 0.65
TRIM28-213ENST00000598355 Q3C1V9 767 aa19.13■□□□□ 0.65
TRIM28-213ENST00000598355 SLC9C1Q4G0N8 1177 aa19.13■□□□□ 0.65
TRIM28-213ENST00000598355 AKNAD1Q5T1N1 836 aa19.13■□□□□ 0.65
TRIM28-213ENST00000598355 GMCL1P1Q8NEA9 526 aa19.13■□□□□ 0.65
TRIM28-213ENST00000598355 TANGO6Q9C0B7 1094 aa19.13■□□□□ 0.65
TRIM28-213ENST00000598355 PORCNQ9H237 461 aa19.13■□□□□ 0.65
TRIM28-213ENST00000598355 IL17RBQ9NRM6 502 aa19.13■□□□□ 0.65
TRIM28-213ENST00000598355 GJD2Q9UKL4 321 aa19.13■□□□□ 0.65
TRIM28-213ENST00000598355 TSPY2A6NKD2 308 aa19.12■□□□□ 0.65
TRIM28-213ENST00000598355 SGSM2O43147 1006 aa19.12■□□□□ 0.65
TRIM28-213ENST00000598355 ECM2O94769 699 aaPredicted RBP19.12■□□□□ 0.65
TRIM28-213ENST00000598355 NDUFB10O96000 172 aa19.12■□□□□ 0.65
TRIM28-213ENST00000598355 MAPK4P31152 587 aa19.12■□□□□ 0.65
TRIM28-213ENST00000598355 FLT3LGP49771 235 aa19.12■□□□□ 0.65
TRIM28-213ENST00000598355 ATP2B2Q01814 1243 aa19.12■□□□□ 0.65
TRIM28-213ENST00000598355 BMP2KLQ5H9B9 411 aa19.12■□□□□ 0.65
TRIM28-213ENST00000598355 PPP4R3BQ5MIZ7 849 aa19.12■□□□□ 0.65
TRIM28-213ENST00000598355 MB21D1Q8N884 522 aa19.12■□□□□ 0.65
TRIM28-213ENST00000598355 RUFY2Q8WXA3 655 aa19.12■□□□□ 0.65
TRIM28-213ENST00000598355 COA7Q96BR5 231 aa19.12■□□□□ 0.65
TRIM28-213ENST00000598355 PAGR1Q9BTK6 254 aa19.12■□□□□ 0.65
TRIM28-213ENST00000598355 HOXC10Q9NYD6 342 aa19.12■□□□□ 0.65
TRIM28-213ENST00000598355 CLIP2Q9UDT6 1046 aa19.12■□□□□ 0.65
TRIM28-213ENST00000598355 NEDD4P46934 1319 aa19.11■□□□□ 0.65
TRIM28-213ENST00000598355 F5H6K3 240 aa19.11■□□□□ 0.65
TRIM28-213ENST00000598355 FLOT1O75955 427 aa19.11■□□□□ 0.65
TRIM28-213ENST00000598355 GRK4P32298 578 aa19.11■□□□□ 0.65
TRIM28-213ENST00000598355 HAND2P61296 217 aa19.11■□□□□ 0.65
TRIM28-213ENST00000598355 KLRC3Q07444 240 aa19.11■□□□□ 0.65
TRIM28-213ENST00000598355 SKAP1Q86WV1 359 aa19.11■□□□□ 0.65
TRIM28-213ENST00000598355 SLAIN1Q8ND83 568 aa19.11■□□□□ 0.65
TRIM28-213ENST00000598355 PXYLP1Q8TE99 480 aa19.11■□□□□ 0.65
TRIM28-213ENST00000598355 CCDC136Q96JN2 1154 aa19.11■□□□□ 0.65
TRIM28-213ENST00000598355 TCP11L1Q9NUJ3 509 aa19.11■□□□□ 0.65
TRIM28-213ENST00000598355 MKI67P46013 3256 aaKnown RBP19.11■□□□□ 0.65
TRIM28-213ENST00000598355 PLXNA1Q9UIW2 1896 aa19.1■□□□□ 0.65
TRIM28-213ENST00000598355 FAM83BQ5T0W9 1011 aa19.1■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms