RNA–Protein interactions for RNA: ENST00000597618.5

TRIM28-210, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 609 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-210ENST00000597618 CYP7A1P22680 504 aa12.37□□□□□ -0.43
TRIM28-210ENST00000597618 DNAJB2P25686 324 aa12.37□□□□□ -0.43
TRIM28-210ENST00000597618 DYNLL1P63167 89 aaKnown RBP12.37□□□□□ -0.43
TRIM28-210ENST00000597618 FPGSQ05932 587 aa12.37□□□□□ -0.43
TRIM28-210ENST00000597618 COG2Q14746 738 aa12.37□□□□□ -0.43
TRIM28-210ENST00000597618 GRIN2CQ14957 1233 aa12.37□□□□□ -0.43
TRIM28-210ENST00000597618 FAM47AQ5JRC9 791 aa12.37□□□□□ -0.43
TRIM28-210ENST00000597618 ABRAQ8N0Z2 381 aa12.37□□□□□ -0.43
TRIM28-210ENST00000597618 MB21D1Q8N884 522 aa12.37□□□□□ -0.43
TRIM28-210ENST00000597618 USP38Q8NB14 1042 aa12.37□□□□□ -0.43
TRIM28-210ENST00000597618 ZNF512BQ96KM6 892 aaPredicted RBP12.37□□□□□ -0.43
TRIM28-210ENST00000597618 MROH8Q9H579 483 aa12.37□□□□□ -0.43
TRIM28-210ENST00000597618 NRBP1Q9UHY1 535 aa12.37□□□□□ -0.43
TRIM28-210ENST00000597618 CDK5RAP2Q96SN8 1893 aa12.37□□□□□ -0.43
TRIM28-210ENST00000597618 NCOR1O75376 2440 aa12.36□□□□□ -0.43
TRIM28-210ENST00000597618 HSFX4A0A1B0GTS1 333 aaPredicted RBP12.36□□□□□ -0.43
TRIM28-210ENST00000597618 HSFX3A0A1B0GWH4 333 aaPredicted RBP12.36□□□□□ -0.43
TRIM28-210ENST00000597618 KIAA0355O15063 1070 aa12.36□□□□□ -0.43
TRIM28-210ENST00000597618 COBLO75128 1261 aa12.36□□□□□ -0.43
TRIM28-210ENST00000597618 RARBP10826 455 aa12.36□□□□□ -0.43
TRIM28-210ENST00000597618 RAG1P15918 1043 aa12.36□□□□□ -0.43
TRIM28-210ENST00000597618 ITGB8P26012 769 aa12.36□□□□□ -0.43
TRIM28-210ENST00000597618 EPHB4P54760 987 aa12.36□□□□□ -0.43
TRIM28-210ENST00000597618 TNNI3KQ59H18 835 aa12.36□□□□□ -0.43
TRIM28-210ENST00000597618 RNF180Q86T96 592 aa12.36□□□□□ -0.43
TRIM28-210ENST00000597618 MIGA1Q8NAN2 632 aa12.36□□□□□ -0.43
TRIM28-210ENST00000597618 ARHGAP45Q92619 1136 aa12.36□□□□□ -0.43
TRIM28-210ENST00000597618 DBNDD2Q9BQY9 259 aa12.36□□□□□ -0.43
TRIM28-210ENST00000597618 TANGO6Q9C0B7 1094 aa12.36□□□□□ -0.43
TRIM28-210ENST00000597618 XPNPEP3Q9NQH7 507 aa12.36□□□□□ -0.43
TRIM28-210ENST00000597618 PIH1D3Q9NQM4 214 aaKnown RBP12.36□□□□□ -0.43
TRIM28-210ENST00000597618 FPGT-TNNI3KV9GXZ4 949 aa12.36□□□□□ -0.43
TRIM28-210ENST00000597618 ROBO3Q96MS0 1386 aa12.35□□□□□ -0.43
TRIM28-210ENST00000597618 PNMA6EA0A0J9YXQ4 647 aa12.35□□□□□ -0.43
TRIM28-210ENST00000597618 PQBP1O60828 265 aaKnown RBP12.35□□□□□ -0.43
TRIM28-210ENST00000597618 SHMT1P34896 483 aa12.35□□□□□ -0.43
TRIM28-210ENST00000597618 ZAP70P43403 619 aa12.35□□□□□ -0.43
TRIM28-210ENST00000597618 PRAMEF19Q5SWL8 479 aa12.35□□□□□ -0.43
TRIM28-210ENST00000597618 TMED8Q6PL24 325 aaPredicted RBP12.35□□□□□ -0.43
TRIM28-210ENST00000597618 TIFAQ96CG3 184 aa12.35□□□□□ -0.43
TRIM28-210ENST00000597618 CDCA7LQ96GN5 454 aa12.35□□□□□ -0.43
TRIM28-210ENST00000597618 MAML3Q96JK9 1138 aa12.35□□□□□ -0.43
TRIM28-210ENST00000597618 ZNF576Q9H609 170 aa12.35□□□□□ -0.43
TRIM28-210ENST00000597618 A0A1W2PQ45 241 aaPredicted RBP12.34□□□□□ -0.43
TRIM28-210ENST00000597618 A0A1W2PQY0 241 aa12.34□□□□□ -0.43
TRIM28-210ENST00000597618 IDH1O75874 414 aaKnown RBP12.34□□□□□ -0.43
TRIM28-210ENST00000597618 FCER1AP12319 257 aa12.34□□□□□ -0.43
TRIM28-210ENST00000597618 GUCY1A2P33402 732 aa12.34□□□□□ -0.43
TRIM28-210ENST00000597618 OS9Q13438 667 aaPredicted RBP12.34□□□□□ -0.43
TRIM28-210ENST00000597618 PLS1Q14651 629 aa12.34□□□□□ -0.43
TRIM28-210ENST00000597618 SEPT2Q15019 361 aa12.34□□□□□ -0.43
TRIM28-210ENST00000597618 NCAPG2Q86XI2 1143 aa12.34□□□□□ -0.43
TRIM28-210ENST00000597618 TRMT2AQ8IZ69 625 aaKnown RBP12.34□□□□□ -0.43
TRIM28-210ENST00000597618 ATXN2LQ8WWM7 1075 aaKnown RBP12.34□□□□□ -0.43
TRIM28-210ENST00000597618 GAS2L1Q99501 681 aaPredicted RBP12.34□□□□□ -0.43
TRIM28-210ENST00000597618 TMEM39AQ9NV64 488 aa12.34□□□□□ -0.43
TRIM28-210ENST00000597618 CHD9Q3L8U1 2897 aa12.34□□□□□ -0.43
TRIM28-210ENST00000597618 A0A0G2JMZ2 1700 aa12.34□□□□□ -0.43
TRIM28-210ENST00000597618 RARSP54136 660 aaKnown RBP12.33□□□□□ -0.44
TRIM28-210ENST00000597618 CCDC174Q6PII3 467 aa12.33□□□□□ -0.44
TRIM28-210ENST00000597618 ANKRD33Q7Z3H0 272 aa12.33□□□□□ -0.44
TRIM28-210ENST00000597618 MAGEB6Q8N7X4 407 aa12.33□□□□□ -0.44
TRIM28-210ENST00000597618 TOX2Q96NM4 488 aa12.33□□□□□ -0.44
TRIM28-210ENST00000597618 MYH1P12882 1939 aa12.33□□□□□ -0.44
TRIM28-210ENST00000597618 A0A1W2PRG0 241 aa12.32□□□□□ -0.44
TRIM28-210ENST00000597618 DCDC2CA8MYV0 355 aa12.32□□□□□ -0.44
TRIM28-210ENST00000597618 MPHOSPH10O00566 681 aaKnown RBP12.32□□□□□ -0.44
TRIM28-210ENST00000597618 FLOT1O75955 427 aa12.32□□□□□ -0.44
TRIM28-210ENST00000597618 SLC25A27O95847 323 aa12.32□□□□□ -0.44
TRIM28-210ENST00000597618 PGK1P00558 417 aa12.32□□□□□ -0.44
TRIM28-210ENST00000597618 POLR3DP05423 398 aaPredicted RBP12.32□□□□□ -0.44
TRIM28-210ENST00000597618 DSG3P32926 999 aa12.32□□□□□ -0.44
TRIM28-210ENST00000597618 PLA2G5P39877 138 aa12.32□□□□□ -0.44
TRIM28-210ENST00000597618 PLCD1P51178 756 aa12.32□□□□□ -0.44
TRIM28-210ENST00000597618 GABPAQ06546 454 aa12.32□□□□□ -0.44
TRIM28-210ENST00000597618 MAP3K12Q12852 859 aa12.32□□□□□ -0.44
TRIM28-210ENST00000597618 AKNAD1Q5T1N1 836 aa12.32□□□□□ -0.44
TRIM28-210ENST00000597618 THEGQ9P2T0 379 aa12.32□□□□□ -0.44
TRIM28-210ENST00000597618 DBNLQ9UJU6 430 aaKnown RBP12.32□□□□□ -0.44
TRIM28-210ENST00000597618 XIRP2A4UGR9 3374 aa12.32□□□□□ -0.44
TRIM28-210ENST00000597618 AKR1A1P14550 325 aa12.31□□□□□ -0.44
TRIM28-210ENST00000597618 FAAP100Q0VG06 881 aa12.31□□□□□ -0.44
TRIM28-210ENST00000597618 POLA2Q14181 598 aa12.31□□□□□ -0.44
TRIM28-210ENST00000597618 TMEM179Q6ZVK1 233 aa12.31□□□□□ -0.44
TRIM28-210ENST00000597618 SLC44A5Q8NCS7 719 aa12.31□□□□□ -0.44
TRIM28-210ENST00000597618 ADAMTS19Q8TE59 1207 aa12.31□□□□□ -0.44
TRIM28-210ENST00000597618 NUP133Q8WUM0 1156 aa12.31□□□□□ -0.44
TRIM28-210ENST00000597618 ATG4CQ96DT6 458 aa12.31□□□□□ -0.44
TRIM28-210ENST00000597618 ASB2Q96Q27 587 aa12.31□□□□□ -0.44
TRIM28-210ENST00000597618 MMP19Q99542 508 aa12.31□□□□□ -0.44
TRIM28-210ENST00000597618 TINF2Q9BSI4 451 aa12.31□□□□□ -0.44
TRIM28-210ENST00000597618 TSEN34Q9BSV6 310 aaKnown RBP12.31□□□□□ -0.44
TRIM28-210ENST00000597618 SH2D4AQ9H788 454 aa12.31□□□□□ -0.44
TRIM28-210ENST00000597618 STARD7Q9NQZ5 370 aa12.31□□□□□ -0.44
TRIM28-210ENST00000597618 DIS3Q9Y2L1 958 aaKnown RBP12.31□□□□□ -0.44
TRIM28-210ENST00000597618 MOXD2PA6NHM9 499 aa12.3□□□□□ -0.44
TRIM28-210ENST00000597618 IPO8O15397 1037 aaKnown RBP12.3□□□□□ -0.44
TRIM28-210ENST00000597618 ADAMTS4O75173 837 aa12.3□□□□□ -0.44
TRIM28-210ENST00000597618 TIMP1P01033 207 aa12.3□□□□□ -0.44
TRIM28-210ENST00000597618 ACLYP53396 1101 aa12.3□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms