RNA–Protein interactions for RNA: ENST00000595242.3

SCAF1-202, Transcript of SR-related CTD associated factor 1, humanhuman

APPRIS ALT2 TSL 3

Gene SCAF1, Length 463 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF1-202ENST00000595242 NSUN4Q96CB9 384 aaKnown RBP15.56■□□□□ 0.08
SCAF1-202ENST00000595242 DHX36Q9H2U1 1008 aaKnown RBP15.56■□□□□ 0.08
SCAF1-202ENST00000595242 PRDM12Q9H4Q4 367 aa15.56■□□□□ 0.08
SCAF1-202ENST00000595242 ZBTB21Q9ULJ3 1066 aa15.56■□□□□ 0.08
SCAF1-202ENST00000595242 ARIH1Q9Y4X5 557 aaPredicted RBP15.56■□□□□ 0.08
SCAF1-202ENST00000595242 MYO5AQ9Y4I1 1855 aaKnown RBP15.56■□□□□ 0.08
SCAF1-202ENST00000595242 USP17L15C9J2P7 530 aa15.55■□□□□ 0.08
SCAF1-202ENST00000595242 USP17L13C9JLJ4 530 aa15.55■□□□□ 0.08
SCAF1-202ENST00000595242 USP17L11C9JVI0 530 aa15.55■□□□□ 0.08
SCAF1-202ENST00000595242 USP17L18D6R9N7 530 aa15.55■□□□□ 0.08
SCAF1-202ENST00000595242 USP17L22D6RA61 530 aa15.55■□□□□ 0.08
SCAF1-202ENST00000595242 USP17L17D6RBQ6 530 aa15.55■□□□□ 0.08
SCAF1-202ENST00000595242 USP17L19D6RCP7 530 aa15.55■□□□□ 0.08
SCAF1-202ENST00000595242 USP17L20D6RJB6 530 aa15.55■□□□□ 0.08
SCAF1-202ENST00000595242 KIAA0355O15063 1070 aa15.55■□□□□ 0.08
SCAF1-202ENST00000595242 IL15P40933 162 aaPredicted RBP15.55■□□□□ 0.08
SCAF1-202ENST00000595242 USP17L24Q0WX57 530 aa15.55■□□□□ 0.08
SCAF1-202ENST00000595242 LRRC41Q15345 812 aa15.55■□□□□ 0.08
SCAF1-202ENST00000595242 SIRT2Q8IXJ6 389 aa15.55■□□□□ 0.08
SCAF1-202ENST00000595242 RPAP2Q8IXW5 612 aaPredicted RBP15.55■□□□□ 0.08
SCAF1-202ENST00000595242 SH3RF3Q8TEJ3 882 aaPredicted RBP15.55■□□□□ 0.08
SCAF1-202ENST00000595242 NECAB3Q96P71 396 aaPredicted RBP15.55■□□□□ 0.08
SCAF1-202ENST00000595242 DNAJC18Q9H819 358 aa15.55■□□□□ 0.08
SCAF1-202ENST00000595242 GINM1Q9NU53 330 aa15.55■□□□□ 0.08
SCAF1-202ENST00000595242 BTBD7Q9P203 1132 aa15.55■□□□□ 0.08
SCAF1-202ENST00000595242 PIEZO1Q92508 2521 aa15.54■□□□□ 0.08
SCAF1-202ENST00000595242 OLFML2BQ68BL8 750 aa15.54■□□□□ 0.08
SCAF1-202ENST00000595242 TBC1D9Q6ZT07 1266 aa15.54■□□□□ 0.08
SCAF1-202ENST00000595242 FOXP4Q8IVH2 680 aaPredicted RBP15.54■□□□□ 0.08
SCAF1-202ENST00000595242 CRACR2BQ8N4Y2 399 aaPredicted RBP15.54■□□□□ 0.08
SCAF1-202ENST00000595242 TRIM34Q9BYJ4 488 aa15.54■□□□□ 0.08
SCAF1-202ENST00000595242 HCN4Q9Y3Q4 1203 aa15.54■□□□□ 0.08
SCAF1-202ENST00000595242 PQBP1O60828 265 aaKnown RBP15.53■□□□□ 0.08
SCAF1-202ENST00000595242 PBX2P40425 430 aa15.53■□□□□ 0.08
SCAF1-202ENST00000595242 ZYXQ15942 572 aaKnown RBP15.53■□□□□ 0.08
SCAF1-202ENST00000595242 PRAMEF19Q5SWL8 479 aa15.53■□□□□ 0.08
SCAF1-202ENST00000595242 CATSPERGQ6ZRH7 1159 aa15.53■□□□□ 0.08
SCAF1-202ENST00000595242 METTL16Q86W50 562 aaKnown RBP15.53■□□□□ 0.08
SCAF1-202ENST00000595242 C12orf42Q96LP6 360 aa15.53■□□□□ 0.08
SCAF1-202ENST00000595242 PBX4Q9BYU1 374 aa15.53■□□□□ 0.08
SCAF1-202ENST00000595242 TMEM39AQ9NV64 488 aa15.53■□□□□ 0.08
SCAF1-202ENST00000595242 RAI14Q9P0K7 980 aa15.53■□□□□ 0.08
SCAF1-202ENST00000595242 PHF24Q9UPV7 400 aa15.53■□□□□ 0.08
SCAF1-202ENST00000595242 MUC6Q6W4X9 2439 aa15.53■□□□□ 0.08
SCAF1-202ENST00000595242 GRXCR1A8MXD5 290 aa15.52■□□□□ 0.08
SCAF1-202ENST00000595242 IGFBP4P22692 258 aa15.52■□□□□ 0.08
SCAF1-202ENST00000595242 ADORA2AP29274 412 aa15.52■□□□□ 0.08
SCAF1-202ENST00000595242 ADGRE1Q14246 886 aa15.52■□□□□ 0.08
SCAF1-202ENST00000595242 FAM47AQ5JRC9 791 aa15.52■□□□□ 0.08
SCAF1-202ENST00000595242 LBX2Q6XYB7 198 aa15.52■□□□□ 0.08
SCAF1-202ENST00000595242 CCDC129Q6ZRS4 1044 aa15.52■□□□□ 0.08
SCAF1-202ENST00000595242 XAGE2Q96GT9 111 aa15.52■□□□□ 0.08
SCAF1-202ENST00000595242 FEZ1Q99689 392 aa15.52■□□□□ 0.08
SCAF1-202ENST00000595242 NOL10Q9BSC4 688 aaKnown RBP15.52■□□□□ 0.08
SCAF1-202ENST00000595242 C1orf115Q9H7X2 142 aa15.52■□□□□ 0.08
SCAF1-202ENST00000595242 STRNO43815 780 aa15.51■□□□□ 0.07
SCAF1-202ENST00000595242 CEP85Q6P2H3 762 aa15.51■□□□□ 0.07
SCAF1-202ENST00000595242 PI16Q6UXB8 463 aa15.51■□□□□ 0.07
SCAF1-202ENST00000595242 CHD1LQ86WJ1 897 aa15.51■□□□□ 0.07
SCAF1-202ENST00000595242 MAPKAPK5Q8IW41 473 aa15.51■□□□□ 0.07
SCAF1-202ENST00000595242 SPATA5Q8NB90 893 aa15.51■□□□□ 0.07
SCAF1-202ENST00000595242 MEIS3Q99687 375 aa15.51■□□□□ 0.07
SCAF1-202ENST00000595242 BUD13Q9BRD0 619 aaKnown RBP eCLIP15.51■□□□□ 0.074e-7■□□□□ 9
SCAF1-202ENST00000595242 LRFN3Q9BTN0 628 aa15.51■□□□□ 0.07
SCAF1-202ENST00000595242 DCTPP1Q9H773 170 aa15.51■□□□□ 0.07
SCAF1-202ENST00000595242 HMG20BQ9P0W2 317 aa15.51■□□□□ 0.07
SCAF1-202ENST00000595242 PALD1Q9ULE6 856 aa15.51■□□□□ 0.07
SCAF1-202ENST00000595242 PA2G4Q9UQ80 394 aaKnown RBP15.51■□□□□ 0.07
SCAF1-202ENST00000595242 A0A1B0GUL7 405 aa15.5■□□□□ 0.07
SCAF1-202ENST00000595242 GH2P01242 217 aa15.5■□□□□ 0.07
SCAF1-202ENST00000595242 BMP1P13497 986 aa15.5■□□□□ 0.07
SCAF1-202ENST00000595242 SLC44A5Q8NCS7 719 aa15.5■□□□□ 0.07
SCAF1-202ENST00000595242 TGFBRAP1Q8WUH2 860 aa15.5■□□□□ 0.07
SCAF1-202ENST00000595242 IPO9Q96P70 1041 aaKnown RBP15.5■□□□□ 0.07
SCAF1-202ENST00000595242 TSPYL2Q9H2G4 693 aaPredicted RBP15.5■□□□□ 0.07
SCAF1-202ENST00000595242 AATFQ9NY61 560 aaKnown RBP eCLIP15.5■□□□□ 0.07
SCAF1-202ENST00000595242 TRANK1O15050 2925 aa15.5■□□□□ 0.07
SCAF1-202ENST00000595242 FLT1P17948 1338 aa15.49■□□□□ 0.07
SCAF1-202ENST00000595242 SPDYE16A6NNV3 312 aaPredicted RBP15.49■□□□□ 0.07
SCAF1-202ENST00000595242 COBLO75128 1261 aa15.49■□□□□ 0.07
SCAF1-202ENST00000595242 BAG3O95817 575 aa15.49■□□□□ 0.07
SCAF1-202ENST00000595242 GNAI3P08754 354 aa15.49■□□□□ 0.07
SCAF1-202ENST00000595242 VCAM1P19320 739 aa15.49■□□□□ 0.07
SCAF1-202ENST00000595242 USP14P54578 494 aa15.49■□□□□ 0.07
SCAF1-202ENST00000595242 FAAP100Q0VG06 881 aa15.49■□□□□ 0.07
SCAF1-202ENST00000595242 MOV10L1Q9BXT6 1211 aaKnown RBP15.49■□□□□ 0.07
SCAF1-202ENST00000595242 COPRSQ9NQ92 184 aa15.49■□□□□ 0.07
SCAF1-202ENST00000595242 XPNPEP3Q9NQH7 507 aa15.49■□□□□ 0.07
SCAF1-202ENST00000595242 CXXC1Q9P0U4 656 aaPredicted RBP15.49■□□□□ 0.07
SCAF1-202ENST00000595242 COL11A1P12107 1806 aaPredicted RBP15.49■□□□□ 0.07
SCAF1-202ENST00000595242 A0A0G2JMZ2 1700 aa15.48■□□□□ 0.07
SCAF1-202ENST00000595242 PRRC2BQ5JSZ5 2229 aaKnown RBP15.48■□□□□ 0.07
SCAF1-202ENST00000595242 A0A1W2PQ45 241 aaPredicted RBP15.48■□□□□ 0.07
SCAF1-202ENST00000595242 A0A1W2PQY0 241 aa15.48■□□□□ 0.07
SCAF1-202ENST00000595242 TIMP1P01033 207 aa15.48■□□□□ 0.07
SCAF1-202ENST00000595242 RARBP10826 455 aa15.48■□□□□ 0.07
SCAF1-202ENST00000595242 C16orf59Q7L2K0 433 aa15.48■□□□□ 0.07
SCAF1-202ENST00000595242 ANKRD33Q7Z3H0 272 aa15.48■□□□□ 0.07
SCAF1-202ENST00000595242 RNF180Q86T96 592 aa15.48■□□□□ 0.07
SCAF1-202ENST00000595242 TOX2Q96NM4 488 aa15.48■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms