RNA–Protein interactions for RNA: ENST00000592244.1

LIG3-214, Transcript of DNA ligase 3, humanhuman

TSL 3

Gene LIG3, Length 440 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-214ENST00000592244 MFAP1P55081 439 aaKnown RBP13.09□□□□□ -0.31
LIG3-214ENST00000592244 WDR78Q5VTH9 848 aa13.09□□□□□ -0.31
LIG3-214ENST00000592244 PRPF38BQ5VTL8 546 aaKnown RBP13.09□□□□□ -0.31
LIG3-214ENST00000592244 B4GALNT3Q6L9W6 998 aa13.09□□□□□ -0.31
LIG3-214ENST00000592244 CHD1LQ86WJ1 897 aa13.09□□□□□ -0.31
LIG3-214ENST00000592244 IFNL3Q8IZI9 196 aa13.09□□□□□ -0.31
LIG3-214ENST00000592244 EXOC6Q8TAG9 804 aa13.09□□□□□ -0.31
LIG3-214ENST00000592244 TXNRD2Q9NNW7 524 aa13.09□□□□□ -0.31
LIG3-214ENST00000592244 HELLSQ9NRZ9 838 aa13.09□□□□□ -0.31
LIG3-214ENST00000592244 SALL3Q9BXA9 1300 aa13.09□□□□□ -0.31
LIG3-214ENST00000592244 ROBO3Q96MS0 1386 aa13.08□□□□□ -0.31
LIG3-214ENST00000592244 A0A1W2PRG0 241 aa13.08□□□□□ -0.32
LIG3-214ENST00000592244 RAD21O60216 631 aa13.08□□□□□ -0.32
LIG3-214ENST00000592244 FLOT1O75955 427 aa13.08□□□□□ -0.32
LIG3-214ENST00000592244 EEF2P13639 858 aaKnown RBP13.08□□□□□ -0.32
LIG3-214ENST00000592244 EVX2Q03828 476 aa13.08□□□□□ -0.32
LIG3-214ENST00000592244 MTFR1Q15390 333 aa13.08□□□□□ -0.32
LIG3-214ENST00000592244 GPR142Q7Z601 462 aa13.08□□□□□ -0.32
LIG3-214ENST00000592244 SLC5A4Q9NY91 659 aa13.08□□□□□ -0.32
LIG3-214ENST00000592244 GJD2Q9UKL4 321 aa13.08□□□□□ -0.32
LIG3-214ENST00000592244 SYNPO2Q9UMS6 1093 aa13.08□□□□□ -0.32
LIG3-214ENST00000592244 DDX60LQ5H9U9 1706 aaKnown RBP13.08□□□□□ -0.32
LIG3-214ENST00000592244 KIAA0100Q14667 2235 aaKnown RBP13.07□□□□□ -0.32
LIG3-214ENST00000592244 SPDYE16A6NNV3 312 aaPredicted RBP13.07□□□□□ -0.32
LIG3-214ENST00000592244 TFRCP02786 760 aaKnown RBP13.07□□□□□ -0.32
LIG3-214ENST00000592244 ZKSCAN1P17029 563 aaPredicted RBP13.07□□□□□ -0.32
LIG3-214ENST00000592244 CYP2B6P20813 491 aa13.07□□□□□ -0.32
LIG3-214ENST00000592244 NUCB1Q02818 461 aa13.07□□□□□ -0.32
LIG3-214ENST00000592244 SPICE1Q8N0Z3 855 aa13.07□□□□□ -0.32
LIG3-214ENST00000592244 RILPL2Q969X0 211 aa13.07□□□□□ -0.32
LIG3-214ENST00000592244 HMX1Q9NP08 348 aaPredicted RBP13.07□□□□□ -0.32
LIG3-214ENST00000592244 NYAP2Q9P242 653 aa13.07□□□□□ -0.32
LIG3-214ENST00000592244 SLC15A5A6NIM6 579 aa13.06□□□□□ -0.32
LIG3-214ENST00000592244 HIP1O00291 1037 aa13.06□□□□□ -0.32
LIG3-214ENST00000592244 STRNO43815 780 aa13.06□□□□□ -0.32
LIG3-214ENST00000592244 SGPL1O95470 568 aa13.06□□□□□ -0.32
LIG3-214ENST00000592244 TSPY3P0CV98 308 aa13.06□□□□□ -0.32
LIG3-214ENST00000592244 TSPY8P0CW00 308 aa13.06□□□□□ -0.32
LIG3-214ENST00000592244 RASA1P20936 1047 aa13.06□□□□□ -0.32
LIG3-214ENST00000592244 DSG3P32926 999 aa13.06□□□□□ -0.32
LIG3-214ENST00000592244 COPB2P35606 906 aa13.06□□□□□ -0.32
LIG3-214ENST00000592244 MAP2K5Q13163 448 aa13.06□□□□□ -0.32
LIG3-214ENST00000592244 Q3C1V9 767 aa13.06□□□□□ -0.32
LIG3-214ENST00000592244 MCMDC2Q4G0Z9 681 aa13.06□□□□□ -0.32
LIG3-214ENST00000592244 STK11IPQ8N1F8 1099 aa13.06□□□□□ -0.32
LIG3-214ENST00000592244 SHCBP1Q8NEM2 672 aa13.06□□□□□ -0.32
LIG3-214ENST00000592244 U2AF1L4Q8WU68 220 aaKnown RBP13.06□□□□□ -0.32
LIG3-214ENST00000592244 SEC62Q99442 399 aaKnown RBP13.06□□□□□ -0.32
LIG3-214ENST00000592244 APBA2Q99767 749 aa13.06□□□□□ -0.32
LIG3-214ENST00000592244 HTATIP2Q9BUP3 242 aa13.06□□□□□ -0.32
LIG3-214ENST00000592244 UNC93B1Q9H1C4 597 aa13.06□□□□□ -0.32
LIG3-214ENST00000592244 PORCNQ9H237 461 aa13.06□□□□□ -0.32
LIG3-214ENST00000592244 MROH8Q9H579 483 aa13.06□□□□□ -0.32
LIG3-214ENST00000592244 EPB41L4AQ9HCS5 686 aaPredicted RBP13.06□□□□□ -0.32
LIG3-214ENST00000592244 CTDP1Q9Y5B0 961 aaPredicted RBP13.06□□□□□ -0.32
LIG3-214ENST00000592244 RPTORQ8N122 1335 aa13.06□□□□□ -0.32
LIG3-214ENST00000592244 SLC25A27O95847 323 aa13.05□□□□□ -0.32
LIG3-214ENST00000592244 TTLL1O95922 423 aa13.05□□□□□ -0.32
LIG3-214ENST00000592244 PPARAQ07869 468 aa13.05□□□□□ -0.32
LIG3-214ENST00000592244 PLS1Q14651 629 aa13.05□□□□□ -0.32
LIG3-214ENST00000592244 MFSD14CQ5VZR4 134 aa13.05□□□□□ -0.32
LIG3-214ENST00000592244 SAMD1Q6SPF0 538 aaPredicted RBP13.05□□□□□ -0.32
LIG3-214ENST00000592244 SIAH1Q8IUQ4 282 aa13.05□□□□□ -0.32
LIG3-214ENST00000592244 DEFB118Q96PH6 123 aa13.05□□□□□ -0.32
LIG3-214ENST00000592244 SPATC1LQ9H0A9 340 aa13.05□□□□□ -0.32
LIG3-214ENST00000592244 XRN2Q9H0D6 950 aaKnown RBP eCLIP13.05□□□□□ -0.32
LIG3-214ENST00000592244 OSBPL3Q9H4L5 887 aa13.05□□□□□ -0.32
LIG3-214ENST00000592244 MYH7P12883 1935 aa13.04□□□□□ -0.32
LIG3-214ENST00000592244 PDE4DIPQ5VU43 2346 aa13.04□□□□□ -0.32
LIG3-214ENST00000592244 CNMDO75829 334 aa13.04□□□□□ -0.32
LIG3-214ENST00000592244 FARP2O94887 1054 aaPredicted RBP13.04□□□□□ -0.32
LIG3-214ENST00000592244 IGHDP01880 384 aa13.04□□□□□ -0.32
LIG3-214ENST00000592244 PTPREP23469 700 aa13.04□□□□□ -0.32
LIG3-214ENST00000592244 ALX1Q15699 326 aa13.04□□□□□ -0.32
LIG3-214ENST00000592244 MORN1Q5T089 497 aa13.04□□□□□ -0.32
LIG3-214ENST00000592244 DPP9Q86TI2 863 aa13.04□□□□□ -0.32
LIG3-214ENST00000592244 CLEC10AQ8IUN9 316 aa13.04□□□□□ -0.32
LIG3-214ENST00000592244 NEDD1Q8NHV4 660 aa13.04□□□□□ -0.32
LIG3-214ENST00000592244 PAK6Q9NQU5 681 aaPredicted RBP13.04□□□□□ -0.32
LIG3-214ENST00000592244 DIAPH3Q9NSV4 1193 aa13.04□□□□□ -0.32
LIG3-214ENST00000592244 BTBD7Q9P203 1132 aa13.04□□□□□ -0.32
LIG3-214ENST00000592244 CLIP2Q9UDT6 1046 aa13.04□□□□□ -0.32
LIG3-214ENST00000592244 TSPY2A6NKD2 308 aa13.03□□□□□ -0.32
LIG3-214ENST00000592244 F5H6K3 240 aa13.03□□□□□ -0.32
LIG3-214ENST00000592244 SMIM22K7EJ46 135 aa13.03□□□□□ -0.32
LIG3-214ENST00000592244 PEX10O60683 326 aa13.03□□□□□ -0.32
LIG3-214ENST00000592244 PRDM1O75626 825 aa13.03□□□□□ -0.32
LIG3-214ENST00000592244 PRKAR2AP13861 404 aaKnown RBP13.03□□□□□ -0.32
LIG3-214ENST00000592244 TFAP4Q01664 338 aa13.03□□□□□ -0.32
LIG3-214ENST00000592244 KLRC3Q07444 240 aa13.03□□□□□ -0.32
LIG3-214ENST00000592244 GRB14Q14449 540 aa13.03□□□□□ -0.32
LIG3-214ENST00000592244 NCAPG2Q86XI2 1143 aa13.03□□□□□ -0.32
LIG3-214ENST00000592244 PLEKHM2Q8IWE5 1019 aa13.03□□□□□ -0.32
LIG3-214ENST00000592244 ABRAQ8N0Z2 381 aa13.03□□□□□ -0.32
LIG3-214ENST00000592244 ANKLE1Q8NAG6 615 aa13.03□□□□□ -0.32
LIG3-214ENST00000592244 USP6NLQ92738 828 aa13.03□□□□□ -0.32
LIG3-214ENST00000592244 ATG4CQ96DT6 458 aa13.03□□□□□ -0.32
LIG3-214ENST00000592244 MOV10L1Q9BXT6 1211 aaKnown RBP13.03□□□□□ -0.32
LIG3-214ENST00000592244 MTMR4Q9NYA4 1195 aa13.03□□□□□ -0.32
LIG3-214ENST00000592244 PPP1R9AQ9ULJ8 1098 aa13.03□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms