RNA–Protein interactions for RNA: ENST00000591515.6

LSM7-206, Transcript of LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated, human

TSL 2

Gene LSM7, Length 710 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LSM7-206	ENST00000591515	ZMYM1	Q5SVZ6	1142 aa		27.65	■■■□□ 2.02
LSM7-206	ENST00000591515	PUS7L	Q9H0K6	701 aa	Known RBP	27.65	■■■□□ 2.02
LSM7-206	ENST00000591515	PORCN	Q9H237	461 aa		27.65	■■■□□ 2.02
LSM7-206	ENST00000591515	HELLS	Q9NRZ9	838 aa		27.65	■■■□□ 2.02
LSM7-206	ENST00000591515	DIAPH3	Q9NSV4	1193 aa		27.65	■■■□□ 2.02
LSM7-206	ENST00000591515	ATP8A2	Q9NTI2	1148 aa		27.65	■■■□□ 2.02
LSM7-206	ENST00000591515	TTC6	Q86TZ1	520 aa		27.64	■■■□□ 2.02
LSM7-206	ENST00000591515	TRIM34	Q9BYJ4	488 aa		27.64	■■■□□ 2.02
LSM7-206	ENST00000591515	RBPJL	Q9UBG7	517 aa		27.64	■■■□□ 2.02
LSM7-206	ENST00000591515	HERC5	Q9UII4	1024 aa	Known RBP	27.64	■■■□□ 2.02
LSM7-206	ENST00000591515	RLF	Q13129	1914 aa		27.64	■■■□□ 2.02
LSM7-206	ENST00000591515	MAPK4	P31152	587 aa		27.63	■■■□□ 2.01
LSM7-206	ENST00000591515	RGS2	P41220	211 aa		27.63	■■■□□ 2.01
LSM7-206	ENST00000591515	MFAP1	P55081	439 aa	Known RBP	27.63	■■■□□ 2.01
LSM7-206	ENST00000591515	JAG1	P78504	1218 aa		27.63	■■■□□ 2.01
LSM7-206	ENST00000591515		Q3C1V9	767 aa		27.63	■■■□□ 2.01
LSM7-206	ENST00000591515	MORN1	Q5T089	497 aa		27.63	■■■□□ 2.01
LSM7-206	ENST00000591515	GPR142	Q7Z601	462 aa		27.63	■■■□□ 2.01
LSM7-206	ENST00000591515	OSBP2	Q969R2	916 aa		27.63	■■■□□ 2.01
LSM7-206	ENST00000591515	TMOD4	Q9NZQ9	345 aa		27.63	■■■□□ 2.01
LSM7-206	ENST00000591515	PI4KB	Q9UBF8	816 aa		27.63	■■■□□ 2.01
LSM7-206	ENST00000591515	SLC4A4	Q9Y6R1	1079 aa		27.63	■■■□□ 2.01
LSM7-206	ENST00000591515	PRUNE2	Q8WUY3	3088 aa		27.63	■■■□□ 2.01
LSM7-206	ENST00000591515	GPAA1	O43292	621 aa		27.62	■■■□□ 2.01
LSM7-206	ENST00000591515	SDS	P20132	328 aa		27.62	■■■□□ 2.01
LSM7-206	ENST00000591515	ERVK-9	P63128	1117 aa		27.62	■■■□□ 2.01
LSM7-206	ENST00000591515	ERVK-24	P63145	666 aa		27.62	■■■□□ 2.01
LSM7-206	ENST00000591515	APBA2	Q99767	749 aa		27.62	■■■□□ 2.01
LSM7-206	ENST00000591515	SHROOM1	Q2M3G4	852 aa	Predicted RBP	27.61	■■■□□ 2.01
LSM7-206	ENST00000591515	SLFNL1	Q499Z3	407 aa		27.61	■■■□□ 2.01
LSM7-206	ENST00000591515	POTEE	Q6S8J3	1075 aa		27.61	■■■□□ 2.01
LSM7-206	ENST00000591515	STRBP	Q96SI9	672 aa	Known RBP	27.61	■■■□□ 2.01
LSM7-206	ENST00000591515	NACAP1	Q9BZK3	213 aa		27.61	■■■□□ 2.01
LSM7-206	ENST00000591515	POLR3D	P05423	398 aa	Predicted RBP	27.6	■■■□□ 2.01
LSM7-206	ENST00000591515	GSPT1	P15170	499 aa	Known RBP	27.6	■■■□□ 2.01
LSM7-206	ENST00000591515	MCMDC2	Q4G0Z9	681 aa		27.6	■■■□□ 2.01
LSM7-206	ENST00000591515	GIMAP6	Q6P9H5	292 aa		27.6	■■■□□ 2.01
LSM7-206	ENST00000591515	FOXP4	Q8IVH2	680 aa	Predicted RBP	27.6	■■■□□ 2.01
LSM7-206	ENST00000591515	CRACR2B	Q8N4Y2	399 aa	Predicted RBP	27.6	■■■□□ 2.01
LSM7-206	ENST00000591515	DNAJC18	Q9H819	358 aa		27.6	■■■□□ 2.01
LSM7-206	ENST00000591515	TTC28	Q96AY4	2481 aa		27.59	■■■□□ 2.01
LSM7-206	ENST00000591515	CHGB	P05060	677 aa		27.59	■■■□□ 2.01
LSM7-206	ENST00000591515	ASNS	P08243	561 aa		27.59	■■■□□ 2.01
LSM7-206	ENST00000591515	ZNF697	Q5TEC3	545 aa		27.59	■■■□□ 2.01
LSM7-206	ENST00000591515	PLEKHH3	Q7Z736	793 aa		27.59	■■■□□ 2.01
LSM7-206	ENST00000591515	SDR42E1	Q8WUS8	393 aa		27.59	■■■□□ 2.01
LSM7-206	ENST00000591515	LBHD1	Q9BQE6	289 aa	Predicted RBP	27.59	■■■□□ 2.01
LSM7-206	ENST00000591515	PAGR1	Q9BTK6	254 aa		27.59	■■■□□ 2.01
LSM7-206	ENST00000591515	MCM9	Q9NXL9	1143 aa		27.59	■■■□□ 2.01
LSM7-206	ENST00000591515		M0R2C6	588 aa		27.58	■■■□□ 2.01
LSM7-206	ENST00000591515	RUFY2	Q8WXA3	655 aa		27.58	■■■□□ 2.01
LSM7-206	ENST00000591515	SENP6	Q9GZR1	1112 aa	Predicted RBP	27.58	■■■□□ 2.01
LSM7-206	ENST00000591515	DCP1A	Q9NPI6	582 aa	Predicted RBP	27.58	■■■□□ 2.01
LSM7-206	ENST00000591515	SAP30BP	Q9UHR5	308 aa	Known RBP	27.58	■■■□□ 2.01
LSM7-206	ENST00000591515	C19orf81	C9J6K1	198 aa		27.57	■■■□□ 2
LSM7-206	ENST00000591515	USP17L10	C9JJH3	530 aa		27.57	■■■□□ 2
LSM7-206	ENST00000591515	APP	P05067	770 aa		27.57	■■■□□ 2
LSM7-206	ENST00000591515	NMI	Q13287	307 aa	Predicted RBP	27.57	■■■□□ 2
LSM7-206	ENST00000591515	BMP2KL	Q5H9B9	411 aa		27.57	■■■□□ 2
LSM7-206	ENST00000591515	CCAR1	Q8IX12	1150 aa	Known RBP	27.57	■■■□□ 2
LSM7-206	ENST00000591515	PALD1	Q9ULE6	856 aa		27.57	■■■□□ 2
LSM7-206	ENST00000591515	NAV1	Q8NEY1	1877 aa		27.57	■■■□□ 2
LSM7-206	ENST00000591515	CDX2	Q99626	313 aa	Predicted RBP	27.56	■■■□□ 2
LSM7-206	ENST00000591515	EHD4	Q9H223	541 aa		27.56	■■■□□ 2
LSM7-206	ENST00000591515	FLRT1	Q9NZU1	646 aa		27.56	■■■□□ 2
LSM7-206	ENST00000591515	ARPP21	Q9UBL0	812 aa	Predicted RBP	27.56	■■■□□ 2
LSM7-206	ENST00000591515	MYH1	P12882	1939 aa		27.56	■■■□□ 2
LSM7-206	ENST00000591515	PATL2	C9JE40	543 aa	Known RBP	27.55	■■■□□ 2
LSM7-206	ENST00000591515	PRKAB2	O43741	272 aa		27.55	■■■□□ 2
LSM7-206	ENST00000591515	GDF11	O95390	407 aa		27.55	■■■□□ 2
LSM7-206	ENST00000591515	ATN1	P54259	1190 aa	Predicted RBP	27.55	■■■□□ 2
LSM7-206	ENST00000591515	MAP2K5	Q13163	448 aa		27.55	■■■□□ 2
LSM7-206	ENST00000591515	GTF3C2	Q8WUA4	911 aa	Predicted RBP	27.55	■■■□□ 2
LSM7-206	ENST00000591515	SEC62	Q99442	399 aa	Known RBP	27.55	■■■□□ 2
LSM7-206	ENST00000591515	TDO2	P48775	406 aa		27.54	■■■□□ 2
LSM7-206	ENST00000591515	FAM227B	Q96M60	508 aa		27.54	■■■□□ 2
LSM7-206	ENST00000591515	EMILIN3	Q9NT22	766 aa		27.54	■■■□□ 2
LSM7-206	ENST00000591515	SERPINB13	Q9UIV8	391 aa		27.54	■■■□□ 2
LSM7-206	ENST00000591515	ZBTB21	Q9ULJ3	1066 aa		27.54	■■■□□ 2
LSM7-206	ENST00000591515	RAD50	Q92878	1312 aa		27.53	■■■□□ 2
LSM7-206	ENST00000591515		A0A0D9SFI3	127 aa		27.53	■■■□□ 2
LSM7-206	ENST00000591515	CWC27	Q6UX04	472 aa	Known RBP	27.53	■■■□□ 2
LSM7-206	ENST00000591515	METTL16	Q86W50	562 aa	Known RBP	27.53	■■■□□ 2
LSM7-206	ENST00000591515	MAFA	Q8NHW3	353 aa	Predicted RBP	27.53	■■■□□ 2
LSM7-206	ENST00000591515	DDX20	Q9UHI6	824 aa	Known RBP	27.53	■■■□□ 2
LSM7-206	ENST00000591515	CCDC171	Q6TFL3	1326 aa		27.52	■■■□□ 2
LSM7-206	ENST00000591515	CNMD	O75829	334 aa		27.52	■■■□□ 2
LSM7-206	ENST00000591515	RTP1	P59025	263 aa		27.52	■■■□□ 2
LSM7-206	ENST00000591515	CASC1	Q6TDU7	716 aa		27.52	■■■□□ 2
LSM7-206	ENST00000591515	NAPB	Q9H115	298 aa		27.52	■■■□□ 2
LSM7-206	ENST00000591515	GSG1L2	A8MUP6	293 aa		27.51	■■□□□ 1.99
LSM7-206	ENST00000591515	MFSD14C	Q5VZR4	134 aa		27.51	■■□□□ 1.99
LSM7-206	ENST00000591515	LPAR1	Q92633	364 aa		27.51	■■□□□ 1.99
LSM7-206	ENST00000591515	SEMA6B	Q9H3T3	888 aa		27.51	■■□□□ 1.99
LSM7-206	ENST00000591515	CWC22	Q9HCG8	908 aa	Known RBP	27.51	■■□□□ 1.99
LSM7-206	ENST00000591515	PRDM6	Q9NQX0	595 aa		27.51	■■□□□ 1.99
LSM7-206	ENST00000591515	GINM1	Q9NU53	330 aa		27.51	■■□□□ 1.99
LSM7-206	ENST00000591515	SHH	Q15465	462 aa		27.5	■■□□□ 1.99
LSM7-206	ENST00000591515	SBK1	Q52WX2	424 aa		27.5	■■□□□ 1.99
LSM7-206	ENST00000591515	C9orf50	Q5SZB4	431 aa		27.5	■■□□□ 1.99

Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms