RNA–Protein interactions for RNA: ENST00000588131.1

VMP1-207, Transcript of vacuole membrane protein 1, humanhuman

TSL 2

Gene VMP1, Length 587 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-207ENST00000588131 DCAF15Q66K64 600 aa13.19□□□□□ -0.3
VMP1-207ENST00000588131 CCDC84Q86UT8 332 aaPredicted RBP13.19□□□□□ -0.3
VMP1-207ENST00000588131 CMTR1Q8N1G2 835 aaKnown RBP13.19□□□□□ -0.3
VMP1-207ENST00000588131 ZNF526Q8TF50 670 aaPredicted RBP13.19□□□□□ -0.3
VMP1-207ENST00000588131 HOOK2Q96ED9 719 aa13.19□□□□□ -0.3
VMP1-207ENST00000588131 DDX11Q96FC9 970 aa13.19□□□□□ -0.3
VMP1-207ENST00000588131 CDCA5Q96FF9 252 aa13.19□□□□□ -0.3
VMP1-207ENST00000588131 GLIS2Q9BZE0 524 aaPredicted RBP13.19□□□□□ -0.3
VMP1-207ENST00000588131 KANSL2Q9H9L4 492 aa13.19□□□□□ -0.3
VMP1-207ENST00000588131 NMRK2Q9NPI5 230 aa13.19□□□□□ -0.3
VMP1-207ENST00000588131 NYAP2Q9P242 653 aa13.19□□□□□ -0.3
VMP1-207ENST00000588131 MTMR7Q9Y216 660 aa13.19□□□□□ -0.3
VMP1-207ENST00000588131 CPLX1O14810 134 aa13.18□□□□□ -0.3
VMP1-207ENST00000588131 DHX16O60231 1041 aaKnown RBP13.18□□□□□ -0.3
VMP1-207ENST00000588131 PLEKHA8P1O95397 391 aa13.18□□□□□ -0.3
VMP1-207ENST00000588131 FDPSP14324 419 aaKnown RBP13.18□□□□□ -0.3
VMP1-207ENST00000588131 VEGFAP15692 232 aaPredicted RBP13.18□□□□□ -0.3
VMP1-207ENST00000588131 SUPT20HL1Q3ZLR7 823 aa13.18□□□□□ -0.3
VMP1-207ENST00000588131 MKL1Q969V6 931 aa13.18□□□□□ -0.3
VMP1-207ENST00000588131 ZNF112Q9UJU3 913 aa13.18□□□□□ -0.3
VMP1-207ENST00000588131 CLEC11AQ9Y240 323 aa13.18□□□□□ -0.3
VMP1-207ENST00000588131 OTOFQ9HC10 1997 aa13.18□□□□□ -0.3
VMP1-207ENST00000588131 A0A1W2PRG0 241 aa13.17□□□□□ -0.3
VMP1-207ENST00000588131 USP17L5A8MUK1 530 aa13.17□□□□□ -0.3
VMP1-207ENST00000588131 USP2O75604 605 aaPredicted RBP13.17□□□□□ -0.3
VMP1-207ENST00000588131 PKP1Q13835 747 aa13.17□□□□□ -0.3
VMP1-207ENST00000588131 PRKG1Q13976 671 aa13.17□□□□□ -0.3
VMP1-207ENST00000588131 PPP4R3BQ5MIZ7 849 aa13.17□□□□□ -0.3
VMP1-207ENST00000588131 MAP1SQ66K74 1059 aaPredicted RBP13.17□□□□□ -0.3
VMP1-207ENST00000588131 TMTC3Q6ZXV5 915 aa13.17□□□□□ -0.3
VMP1-207ENST00000588131 NBPF11Q86T75 865 aa13.17□□□□□ -0.3
VMP1-207ENST00000588131 STAG2Q8N3U4 1231 aa13.17□□□□□ -0.3
VMP1-207ENST00000588131 CTCFLQ8NI51 663 aaPredicted RBP13.17□□□□□ -0.3
VMP1-207ENST00000588131 ACER1Q8TDN7 264 aa13.17□□□□□ -0.3
VMP1-207ENST00000588131 PHKBQ93100 1093 aa13.17□□□□□ -0.3
VMP1-207ENST00000588131 WRNIP1Q96S55 665 aa13.17□□□□□ -0.3
VMP1-207ENST00000588131 MAP3K14Q99558 947 aa13.17□□□□□ -0.3
VMP1-207ENST00000588131 RBM28Q9NW13 759 aaKnown RBP13.17□□□□□ -0.3
VMP1-207ENST00000588131 CHMP5Q9NZZ3 219 aa13.17□□□□□ -0.3
VMP1-207ENST00000588131 MAD2L2Q9UI95 211 aa13.17□□□□□ -0.3
VMP1-207ENST00000588131 CIZ1Q9ULV3 898 aaPredicted RBP13.17□□□□□ -0.3
VMP1-207ENST00000588131 CCDC196A0A1B0GTZ2 297 aa13.16□□□□□ -0.3
VMP1-207ENST00000588131 PALM3A6NDB9 673 aaPredicted RBP13.16□□□□□ -0.3
VMP1-207ENST00000588131 UBE2Q2LH0YL09 131 aa13.16□□□□□ -0.3
VMP1-207ENST00000588131 CTNND1O60716 968 aaKnown RBP13.16□□□□□ -0.3
VMP1-207ENST00000588131 ASNSP08243 561 aa13.16□□□□□ -0.3
VMP1-207ENST00000588131 GOLGA8HP0CJ92 632 aa13.16□□□□□ -0.3
VMP1-207ENST00000588131 SNHG28P0DPA3 235 aa13.16□□□□□ -0.3
VMP1-207ENST00000588131 PDHBP11177 359 aa13.16□□□□□ -0.3
VMP1-207ENST00000588131 IFNAR1P17181 557 aa13.16□□□□□ -0.3
VMP1-207ENST00000588131 ECE1P42892 770 aa13.16□□□□□ -0.3
VMP1-207ENST00000588131 HMGN5P82970 282 aaKnown RBP13.16□□□□□ -0.3
VMP1-207ENST00000588131 FUT2Q10981 343 aa13.16□□□□□ -0.3
VMP1-207ENST00000588131 PPP2R5BQ15173 497 aa13.16□□□□□ -0.3
VMP1-207ENST00000588131 CPLX2Q6PUV4 134 aaKnown RBP13.16□□□□□ -0.3
VMP1-207ENST00000588131 USP17L2Q6R6M4 530 aa13.16□□□□□ -0.3
VMP1-207ENST00000588131 CDC37L1Q7L3B6 337 aa13.16□□□□□ -0.3
VMP1-207ENST00000588131 CCDC82Q8N4S0 544 aa13.16□□□□□ -0.3
VMP1-207ENST00000588131 SRBD1Q8N5C6 995 aaKnown RBP13.16□□□□□ -0.3
VMP1-207ENST00000588131 DDX55Q8NHQ9 600 aaKnown RBP eCLIP13.16□□□□□ -0.3
VMP1-207ENST00000588131 ZKSCAN4Q969J2 545 aaPredicted RBP13.16□□□□□ -0.3
VMP1-207ENST00000588131 KLRG1Q96E93 195 aa13.16□□□□□ -0.3
VMP1-207ENST00000588131 FRMPD2Q68DX3 1309 aaPredicted RBP13.15□□□□□ -0.3
VMP1-207ENST00000588131 CNTNAP5Q8WYK1 1306 aa13.15□□□□□ -0.3
VMP1-207ENST00000588131 STK36Q9NRP7 1315 aa13.15□□□□□ -0.3
VMP1-207ENST00000588131 CDKL5O76039 1030 aa13.15□□□□□ -0.3
VMP1-207ENST00000588131 FMNL1O95466 1100 aaPredicted RBP13.15□□□□□ -0.3
VMP1-207ENST00000588131 PARP1P09874 1014 aaKnown RBP13.15□□□□□ -0.3
VMP1-207ENST00000588131 SYT1P21579 422 aa13.15□□□□□ -0.3
VMP1-207ENST00000588131 KIF5BP33176 963 aa13.15□□□□□ -0.3
VMP1-207ENST00000588131 FOSBP53539 338 aa13.15□□□□□ -0.3
VMP1-207ENST00000588131 FMR1Q06787 632 aaKnown RBP eCLIP13.15□□□□□ -0.3
VMP1-207ENST00000588131 SLC35G1Q2M3R5 365 aa13.15□□□□□ -0.3
VMP1-207ENST00000588131 SCYL3Q8IZE3 742 aa13.15□□□□□ -0.3
VMP1-207ENST00000588131 FAM184AQ8NB25 1140 aa13.15□□□□□ -0.3
VMP1-207ENST00000588131 SLC26A6Q9BXS9 759 aa13.15□□□□□ -0.3
VMP1-207ENST00000588131 ARHGEF10LQ9HCE6 1279 aa13.15□□□□□ -0.3
VMP1-207ENST00000588131 GINM1Q9NU53 330 aa13.15□□□□□ -0.3
VMP1-207ENST00000588131 ORC3Q9UBD5 711 aaPredicted RBP13.15□□□□□ -0.3
VMP1-207ENST00000588131 ZDHHC9Q9Y397 364 aa13.15□□□□□ -0.3
VMP1-207ENST00000588131 PHIPQ8WWQ0 1821 aa13.15□□□□□ -0.3
VMP1-207ENST00000588131 F5H6K3 240 aa13.14□□□□□ -0.31
VMP1-207ENST00000588131 TRAF5O00463 557 aa13.14□□□□□ -0.31
VMP1-207ENST00000588131 NDUFB10O96000 172 aa13.14□□□□□ -0.31
VMP1-207ENST00000588131 KLRC3Q07444 240 aa13.14□□□□□ -0.31
VMP1-207ENST00000588131 SSRP1Q08945 709 aaKnown RBP13.14□□□□□ -0.31
VMP1-207ENST00000588131 ZNF543Q08ER8 600 aa13.14□□□□□ -0.31
VMP1-207ENST00000588131 KIAA1755Q5JYT7 1200 aa13.14□□□□□ -0.31
VMP1-207ENST00000588131 NOL9Q5SY16 702 aaKnown RBP13.14□□□□□ -0.31
VMP1-207ENST00000588131 SLFN13Q68D06 897 aa13.14□□□□□ -0.31
VMP1-207ENST00000588131 MOB2Q70IA6 237 aa13.14□□□□□ -0.31
VMP1-207ENST00000588131 LDHDQ86WU2 507 aa13.14□□□□□ -0.31
VMP1-207ENST00000588131 GMCL1P1Q8NEA9 526 aa13.14□□□□□ -0.31
VMP1-207ENST00000588131 AIFM3Q96NN9 605 aa13.14□□□□□ -0.31
VMP1-207ENST00000588131 CPVLQ9H3G5 476 aa13.14□□□□□ -0.31
VMP1-207ENST00000588131 TMX2Q9Y320 296 aa13.14□□□□□ -0.31
VMP1-207ENST00000588131 hCG_1642624A0A1W2PR95 340 aa13.13□□□□□ -0.31
VMP1-207ENST00000588131 KLRF2D3W0D1 207 aa13.13□□□□□ -0.31
VMP1-207ENST00000588131 STX6O43752 255 aa13.13□□□□□ -0.31
VMP1-207ENST00000588131 RAD21O60216 631 aa13.13□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms