RNA–Protein interactions for RNA: ENST00000587988.5

SMARCA4-213, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4, humanhuman

TSL 2

Gene SMARCA4, Length 552 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA4-213ENST00000587988 NOGQ13253 232 aa12.59□□□□□ -0.39
SMARCA4-213ENST00000587988 CCL15Q16663 113 aa12.59□□□□□ -0.39
SMARCA4-213ENST00000587988 BLOC1S2Q6QNY1 142 aa12.59□□□□□ -0.39
SMARCA4-213ENST00000587988 USP17L2Q6R6M4 530 aa12.59□□□□□ -0.39
SMARCA4-213ENST00000587988 RASGRP2Q7LDG7 609 aa12.59□□□□□ -0.39
SMARCA4-213ENST00000587988 DGKHQ86XP1 1220 aa12.59□□□□□ -0.39
SMARCA4-213ENST00000587988 CHMP4CQ96CF2 233 aa12.59□□□□□ -0.39
SMARCA4-213ENST00000587988 TTC14Q96N46 770 aa12.59□□□□□ -0.39
SMARCA4-213ENST00000587988 FEZ1Q99689 392 aa12.59□□□□□ -0.39
SMARCA4-213ENST00000587988 PTPN18Q99952 460 aa12.59□□□□□ -0.39
SMARCA4-213ENST00000587988 UPF3BQ9BZI7 483 aaKnown RBP12.59□□□□□ -0.39
SMARCA4-213ENST00000587988 TM6SF1Q9BZW5 370 aa12.59□□□□□ -0.39
SMARCA4-213ENST00000587988 VCPKMTQ9H867 229 aa12.59□□□□□ -0.39
SMARCA4-213ENST00000587988 MANSC4A6NHS7 340 aaPredicted RBP12.58□□□□□ -0.4
SMARCA4-213ENST00000587988 SH2B2O14492 632 aaPredicted RBP12.58□□□□□ -0.4
SMARCA4-213ENST00000587988 HMGB1P09429 215 aaKnown RBP12.58□□□□□ -0.4
SMARCA4-213ENST00000587988 TOP1P11387 765 aaKnown RBP12.58□□□□□ -0.4
SMARCA4-213ENST00000587988 CETPP11597 493 aa12.58□□□□□ -0.4
SMARCA4-213ENST00000587988 USP14P54578 494 aa12.58□□□□□ -0.4
SMARCA4-213ENST00000587988 WTAPQ15007 396 aa12.58□□□□□ -0.4
SMARCA4-213ENST00000587988 CCDC178Q5BJE1 867 aa12.58□□□□□ -0.4
SMARCA4-213ENST00000587988 TMEM67Q5HYA8 995 aa12.58□□□□□ -0.4
SMARCA4-213ENST00000587988 TREML2Q5T2D2 321 aa12.58□□□□□ -0.4
SMARCA4-213ENST00000587988 GPAT2Q6NUI2 795 aa12.58□□□□□ -0.4
SMARCA4-213ENST00000587988 GADL1Q6ZQY3 521 aa12.58□□□□□ -0.4
SMARCA4-213ENST00000587988 RUFY3Q7L099 469 aa12.58□□□□□ -0.4
SMARCA4-213ENST00000587988 SPICE1Q8N0Z3 855 aa12.58□□□□□ -0.4
SMARCA4-213ENST00000587988 TBC1D32Q96NH3 1257 aa12.58□□□□□ -0.4
SMARCA4-213ENST00000587988 UPF2Q9HAU5 1272 aaKnown RBP12.58□□□□□ -0.4
SMARCA4-213ENST00000587988 LY9Q9HBG7 655 aa12.58□□□□□ -0.4
SMARCA4-213ENST00000587988 MTMR7Q9Y216 660 aa12.58□□□□□ -0.4
SMARCA4-213ENST00000587988 LOC285556D6RIA3 1793 aa12.58□□□□□ -0.4
SMARCA4-213ENST00000587988 ERICH2A1L162 156 aa12.57□□□□□ -0.4
SMARCA4-213ENST00000587988 BTBD19C9JJ37 291 aa12.57□□□□□ -0.4
SMARCA4-213ENST00000587988 F5H6K3 240 aa12.57□□□□□ -0.4
SMARCA4-213ENST00000587988 IGF2BP3O00425 579 aaKnown RBP eCLIP12.57□□□□□ -0.4
SMARCA4-213ENST00000587988 RAD21O60216 631 aa12.57□□□□□ -0.4
SMARCA4-213ENST00000587988 NDUFB10O96000 172 aa12.57□□□□□ -0.4
SMARCA4-213ENST00000587988 TM4SF4P48230 202 aa12.57□□□□□ -0.4
SMARCA4-213ENST00000587988 KLRC3Q07444 240 aa12.57□□□□□ -0.4
SMARCA4-213ENST00000587988 PPP4R3BQ5MIZ7 849 aa12.57□□□□□ -0.4
SMARCA4-213ENST00000587988 IFIT1BQ5T764 474 aaKnown RBP12.57□□□□□ -0.4
SMARCA4-213ENST00000587988 Q6ZUG5 572 aa12.57□□□□□ -0.4
SMARCA4-213ENST00000587988 FAM43AQ8N2R8 423 aa12.57□□□□□ -0.4
SMARCA4-213ENST00000587988 PROCA1Q8NCQ7 364 aaPredicted RBP12.57□□□□□ -0.4
SMARCA4-213ENST00000587988 TMEM87BQ96K49 555 aa12.57□□□□□ -0.4
SMARCA4-213ENST00000587988 C12orf42Q96LP6 360 aa12.57□□□□□ -0.4
SMARCA4-213ENST00000587988 MTA3Q9BTC8 594 aa12.57□□□□□ -0.4
SMARCA4-213ENST00000587988 SH2D4AQ9H788 454 aa12.57□□□□□ -0.4
SMARCA4-213ENST00000587988 GOPCQ9HD26 462 aa12.57□□□□□ -0.4
SMARCA4-213ENST00000587988 TMOD4Q9NZQ9 345 aa12.57□□□□□ -0.4
SMARCA4-213ENST00000587988 CYP46A1Q9Y6A2 500 aa12.57□□□□□ -0.4
SMARCA4-213ENST00000587988 WDR19Q8NEZ3 1342 aa12.57□□□□□ -0.4
SMARCA4-213ENST00000587988 THSD7BQ9C0I4 1608 aa12.56□□□□□ -0.4
SMARCA4-213ENST00000587988 VCAM1P19320 739 aa12.56□□□□□ -0.4
SMARCA4-213ENST00000587988 MAP2K2P36507 400 aa12.56□□□□□ -0.4
SMARCA4-213ENST00000587988 SART3Q15020 963 aaKnown RBP12.56□□□□□ -0.4
SMARCA4-213ENST00000587988 SLFN13Q68D06 897 aa12.56□□□□□ -0.4
SMARCA4-213ENST00000587988 FASTKD5Q7L8L6 764 aaKnown RBP12.56□□□□□ -0.4
SMARCA4-213ENST00000587988 IFNL1Q8IU54 200 aa12.56□□□□□ -0.4
SMARCA4-213ENST00000587988 PNMA1Q8ND90 353 aa12.56□□□□□ -0.4
SMARCA4-213ENST00000587988 GMCL1P1Q8NEA9 526 aa12.56□□□□□ -0.4
SMARCA4-213ENST00000587988 NUP88Q99567 741 aaPredicted RBP12.56□□□□□ -0.4
SMARCA4-213ENST00000587988 KAT14Q9H8E8 782 aa12.56□□□□□ -0.4
SMARCA4-213ENST00000587988 AGTPBP1Q9UPW5 1226 aa12.56□□□□□ -0.4
SMARCA4-213ENST00000587988 LIFRP42702 1097 aa12.55□□□□□ -0.4
SMARCA4-213ENST00000587988 INHBEP58166 350 aa12.55□□□□□ -0.4
SMARCA4-213ENST00000587988 SREBF2Q12772 1141 aa12.55□□□□□ -0.4
SMARCA4-213ENST00000587988 TOB2Q14106 344 aaPredicted RBP12.55□□□□□ -0.4
SMARCA4-213ENST00000587988 FAM83BQ5T0W9 1011 aa12.55□□□□□ -0.4
SMARCA4-213ENST00000587988 ANKRD23Q86SG2 305 aa12.55□□□□□ -0.4
SMARCA4-213ENST00000587988 LPAR1Q92633 364 aa12.55□□□□□ -0.4
SMARCA4-213ENST00000587988 LARP6Q9BRS8 491 aaKnown RBP12.55□□□□□ -0.4
SMARCA4-213ENST00000587988 MYL10Q9BUA6 226 aa12.55□□□□□ -0.4
SMARCA4-213ENST00000587988 AGXT2Q9BYV1 514 aa12.55□□□□□ -0.4
SMARCA4-213ENST00000587988 RPAP3Q9H6T3 665 aaPredicted RBP12.55□□□□□ -0.4
SMARCA4-213ENST00000587988 PDRG1Q9NUG6 133 aa12.55□□□□□ -0.4
SMARCA4-213ENST00000587988 SYNPO2Q9UMS6 1093 aa12.55□□□□□ -0.4
SMARCA4-213ENST00000587988 PDHXO00330 501 aa12.54□□□□□ -0.4
SMARCA4-213ENST00000587988 WDR46O15213 610 aaKnown RBP12.54□□□□□ -0.4
SMARCA4-213ENST00000587988 PDHBP11177 359 aa12.54□□□□□ -0.4
SMARCA4-213ENST00000587988 HOXA7P31268 230 aaPredicted RBP12.54□□□□□ -0.4
SMARCA4-213ENST00000587988 NEK4P51957 841 aa12.54□□□□□ -0.4
SMARCA4-213ENST00000587988 APOBRQ0VD83 1088 aa12.54□□□□□ -0.4
SMARCA4-213ENST00000587988 NFXL1Q6ZNB6 911 aa12.54□□□□□ -0.4
SMARCA4-213ENST00000587988 CATSPERGQ6ZRH7 1159 aa12.54□□□□□ -0.4
SMARCA4-213ENST00000587988 KCTD1Q719H9 257 aa12.54□□□□□ -0.4
SMARCA4-213ENST00000587988 SGMS1Q86VZ5 419 aa12.54□□□□□ -0.4
SMARCA4-213ENST00000587988 RAB11FIP4Q86YS3 637 aa12.54□□□□□ -0.4
SMARCA4-213ENST00000587988 FBXL16Q8N461 479 aa12.54□□□□□ -0.4
SMARCA4-213ENST00000587988 BRF1Q92994 677 aa12.54□□□□□ -0.4
SMARCA4-213ENST00000587988 BRPF3Q9ULD4 1205 aa12.54□□□□□ -0.4
SMARCA4-213ENST00000587988 CCDC69A6NI79 296 aa12.53□□□□□ -0.4
SMARCA4-213ENST00000587988 SNHG28P0DPA3 235 aa12.53□□□□□ -0.4
SMARCA4-213ENST00000587988 CYP2C8P10632 490 aa12.53□□□□□ -0.4
SMARCA4-213ENST00000587988 BMP3P12645 472 aa12.53□□□□□ -0.4
SMARCA4-213ENST00000587988 RXRAP19793 462 aa12.53□□□□□ -0.4
SMARCA4-213ENST00000587988 SLC1A4P43007 532 aa12.53□□□□□ -0.4
SMARCA4-213ENST00000587988 FGD1P98174 961 aa12.53□□□□□ -0.4
SMARCA4-213ENST00000587988 TROAPQ12815 778 aa12.53□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms