RNA–Protein interactions for RNA: ENST00000586119.1

LIG3-207, Transcript of DNA ligase 3, humanhuman

TSL 3

Gene LIG3, Length 565 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-207ENST00000586119 LBX2Q6XYB7 198 aa14.1□□□□□ -0.15
LIG3-207ENST00000586119 ERC1Q8IUD2 1116 aa14.1□□□□□ -0.15
LIG3-207ENST00000586119 TDHQ8IZJ6 230 aa14.1□□□□□ -0.15
LIG3-207ENST00000586119 DEFB123Q8N688 67 aa14.1□□□□□ -0.15
LIG3-207ENST00000586119 MOV10L1Q9BXT6 1211 aaKnown RBP14.1□□□□□ -0.15
LIG3-207ENST00000586119 DCP1AQ9NPI6 582 aaPredicted RBP14.1□□□□□ -0.15
LIG3-207ENST00000586119 DNAH12Q6ZR08 3092 aa14.09□□□□□ -0.15
LIG3-207ENST00000586119 DLL1O00548 723 aa14.09□□□□□ -0.15
LIG3-207ENST00000586119 COBLO75128 1261 aa14.09□□□□□ -0.15
LIG3-207ENST00000586119 AKR1B1P15121 316 aa14.09□□□□□ -0.15
LIG3-207ENST00000586119 CCNA1P78396 465 aa14.09□□□□□ -0.15
LIG3-207ENST00000586119 LRIT3Q3SXY7 679 aa14.09□□□□□ -0.15
LIG3-207ENST00000586119 PRAMEF19Q5SWL8 479 aa14.09□□□□□ -0.15
LIG3-207ENST00000586119 MFSD14CQ5VZR4 134 aa14.09□□□□□ -0.15
LIG3-207ENST00000586119 CERS3Q8IU89 383 aa14.09□□□□□ -0.15
LIG3-207ENST00000586119 BOLA2Q9H3K6 86 aa14.09□□□□□ -0.15
LIG3-207ENST00000586119 DDX20Q9UHI6 824 aaKnown RBP14.09□□□□□ -0.15
LIG3-207ENST00000586119 MYH8P13535 1937 aa14.08□□□□□ -0.16
LIG3-207ENST00000586119 GLRX3O76003 335 aaKnown RBP14.08□□□□□ -0.16
LIG3-207ENST00000586119 HOXC6P09630 235 aa14.08□□□□□ -0.16
LIG3-207ENST00000586119 COG2Q14746 738 aa14.08□□□□□ -0.16
LIG3-207ENST00000586119 GJC2Q5T442 439 aaPredicted RBP14.08□□□□□ -0.16
LIG3-207ENST00000586119 SAMD1Q6SPF0 538 aaPredicted RBP14.08□□□□□ -0.16
LIG3-207ENST00000586119 SPICE1Q8N0Z3 855 aa14.08□□□□□ -0.16
LIG3-207ENST00000586119 CRNKL1Q9BZJ0 848 aaKnown RBP14.08□□□□□ -0.16
LIG3-207ENST00000586119 TANGO6Q9C0B7 1094 aa14.08□□□□□ -0.16
LIG3-207ENST00000586119 COG6Q9Y2V7 657 aa14.08□□□□□ -0.16
LIG3-207ENST00000586119 COL11A1P12107 1806 aaPredicted RBP14.07□□□□□ -0.16
LIG3-207ENST00000586119 IFIT2P09913 472 aaKnown RBP14.07□□□□□ -0.16
LIG3-207ENST00000586119 ERCC3P19447 782 aa14.07□□□□□ -0.16
LIG3-207ENST00000586119 ADORA2AP29274 412 aa14.07□□□□□ -0.16
LIG3-207ENST00000586119 TTF1Q15361 905 aaPredicted RBP14.07□□□□□ -0.16
LIG3-207ENST00000586119 DPP9Q86TI2 863 aa14.07□□□□□ -0.16
LIG3-207ENST00000586119 CLASRPQ8N2M8 674 aaKnown RBP14.07□□□□□ -0.16
LIG3-207ENST00000586119 LPAR1Q92633 364 aa14.07□□□□□ -0.16
LIG3-207ENST00000586119 ATG4CQ96DT6 458 aa14.07□□□□□ -0.16
LIG3-207ENST00000586119 SPATC1LQ9H0A9 340 aa14.07□□□□□ -0.16
LIG3-207ENST00000586119 MTMR10Q9NXD2 777 aa14.07□□□□□ -0.16
LIG3-207ENST00000586119 IVNS1ABPQ9Y6Y0 642 aa14.07□□□□□ -0.16
LIG3-207ENST00000586119 MBD4O95243 580 aa14.06□□□□□ -0.16
LIG3-207ENST00000586119 CYBAP13498 195 aa14.06□□□□□ -0.16
LIG3-207ENST00000586119 DSG3P32926 999 aa14.06□□□□□ -0.16
LIG3-207ENST00000586119 ADD2P35612 726 aa14.06□□□□□ -0.16
LIG3-207ENST00000586119 PLS1Q14651 629 aa14.06□□□□□ -0.16
LIG3-207ENST00000586119 KIF1BPQ96EK5 621 aa14.06□□□□□ -0.16
LIG3-207ENST00000586119 HOXC10Q9NYD6 342 aa14.06□□□□□ -0.16
LIG3-207ENST00000586119 PARP14Q460N5 1801 aa14.06□□□□□ -0.16
LIG3-207ENST00000586119 SMARCA5O60264 1052 aaPredicted RBP14.05□□□□□ -0.16
LIG3-207ENST00000586119 MYCNP04198 464 aaPredicted RBP14.05□□□□□ -0.16
LIG3-207ENST00000586119 CDK8P49336 464 aa14.05□□□□□ -0.16
LIG3-207ENST00000586119 RTP1P59025 263 aa14.05□□□□□ -0.16
LIG3-207ENST00000586119 HSP90AB4PQ58FF6 505 aa14.05□□□□□ -0.16
LIG3-207ENST00000586119 TMEM179Q6ZVK1 233 aa14.05□□□□□ -0.16
LIG3-207ENST00000586119 NCAPG2Q86XI2 1143 aa14.05□□□□□ -0.16
LIG3-207ENST00000586119 PPIL4Q8WUA2 492 aaKnown RBP eCLIP14.05□□□□□ -0.16
LIG3-207ENST00000586119 ZBTB40Q9NUA8 1239 aa14.05□□□□□ -0.16
LIG3-207ENST00000586119 FBXO28Q9NVF7 368 aa14.05□□□□□ -0.16
LIG3-207ENST00000586119 PAG1Q9NWQ8 432 aa14.05□□□□□ -0.16
LIG3-207ENST00000586119 USP17L12C9JPN9 530 aa14.04□□□□□ -0.16
LIG3-207ENST00000586119 USP17L21D6R901 530 aa14.04□□□□□ -0.16
LIG3-207ENST00000586119 FLOT1O75955 427 aa14.04□□□□□ -0.16
LIG3-207ENST00000586119 TMEM132BQ14DG7 1078 aa14.04□□□□□ -0.16
LIG3-207ENST00000586119 C12orf60Q5U649 245 aa14.04□□□□□ -0.16
LIG3-207ENST00000586119 GPR153Q6NV75 609 aa14.04□□□□□ -0.16
LIG3-207ENST00000586119 TMED8Q6PL24 325 aaPredicted RBP14.04□□□□□ -0.16
LIG3-207ENST00000586119 RPAP2Q8IXW5 612 aaPredicted RBP14.04□□□□□ -0.16
LIG3-207ENST00000586119 STK11IPQ8N1F8 1099 aa14.04□□□□□ -0.16
LIG3-207ENST00000586119 FAM161BQ96MY7 647 aa14.04□□□□□ -0.16
LIG3-207ENST00000586119 TMX2Q9Y320 296 aa14.04□□□□□ -0.16
LIG3-207ENST00000586119 A0A0G2JMZ2 1700 aa14.04□□□□□ -0.16
LIG3-207ENST00000586119 DNM1LO00429 736 aa14.03□□□□□ -0.16
LIG3-207ENST00000586119 STRNO43815 780 aa14.03□□□□□ -0.16
LIG3-207ENST00000586119 EEF2P13639 858 aaKnown RBP14.03□□□□□ -0.16
LIG3-207ENST00000586119 OLFML2BQ68BL8 750 aa14.03□□□□□ -0.16
LIG3-207ENST00000586119 SLC39A5Q6ZMH5 540 aa14.03□□□□□ -0.16
LIG3-207ENST00000586119 SH3RF1Q7Z6J0 888 aa14.03□□□□□ -0.16
LIG3-207ENST00000586119 FERMT2Q96AC1 680 aa14.03□□□□□ -0.16
LIG3-207ENST00000586119 PUS7LQ9H0K6 701 aaKnown RBP14.03□□□□□ -0.16
LIG3-207ENST00000586119 VCPKMTQ9H867 229 aa14.03□□□□□ -0.16
LIG3-207ENST00000586119 SWAP70Q9UH65 585 aa14.03□□□□□ -0.16
LIG3-207ENST00000586119 ATP11BQ9Y2G3 1177 aa14.03□□□□□ -0.16
LIG3-207ENST00000586119 MYH7P12883 1935 aa14.03□□□□□ -0.16
LIG3-207ENST00000586119 LTBP2Q14767 1821 aa14.02□□□□□ -0.16
LIG3-207ENST00000586119 POTEB2H3BUK9 544 aa14.02□□□□□ -0.17
LIG3-207ENST00000586119 MSCO60682 206 aa14.02□□□□□ -0.17
LIG3-207ENST00000586119 PGK2P07205 417 aa14.02□□□□□ -0.17
LIG3-207ENST00000586119 TAL1P17542 331 aaPredicted RBP14.02□□□□□ -0.17
LIG3-207ENST00000586119 ATP5JP18859 108 aa14.02□□□□□ -0.17
LIG3-207ENST00000586119 ICA1Q05084 483 aa14.02□□□□□ -0.17
LIG3-207ENST00000586119 CTR9Q6PD62 1173 aa14.02□□□□□ -0.17
LIG3-207ENST00000586119 SHCBP1Q8NEM2 672 aa14.02□□□□□ -0.17
LIG3-207ENST00000586119 MAML3Q96JK9 1138 aa14.02□□□□□ -0.17
LIG3-207ENST00000586119 HAUS7Q99871 368 aa14.02□□□□□ -0.17
LIG3-207ENST00000586119 GNL3Q9BVP2 549 aaKnown RBP eCLIP14.02□□□□□ -0.17
LIG3-207ENST00000586119 ARHGEF10LQ9HCE6 1279 aa14.02□□□□□ -0.17
LIG3-207ENST00000586119 STXBP5LQ9Y2K9 1186 aa14.02□□□□□ -0.17
LIG3-207ENST00000586119 SLC4A4Q9Y6R1 1079 aa14.02□□□□□ -0.17
LIG3-207ENST00000586119 PLXNA1Q9UIW2 1896 aa14.01□□□□□ -0.17
LIG3-207ENST00000586119 A0A0C4DFX4 3053 aa14.01□□□□□ -0.17
LIG3-207ENST00000586119 ZBED9Q6R2W3 1325 aa14.01□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms