RNA–Protein interactions for RNA: ENST00000583649.1

CASC3-208, Transcript of CASC3, exon junction complex subunit, human

TSL 3

Gene CASC3, Length 577 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CASC3-208	ENST00000583649	COG2	Q14746	738 aa		13.65	□□□□□ -0.22
CASC3-208	ENST00000583649	SKIV2L	Q15477	1246 aa	Known RBP	13.65	□□□□□ -0.22
CASC3-208	ENST00000583649	FAM47A	Q5JRC9	791 aa		13.65	□□□□□ -0.22
CASC3-208	ENST00000583649	MFSD5	Q6N075	450 aa		13.65	□□□□□ -0.22
CASC3-208	ENST00000583649	MAPKAPK5	Q8IW41	473 aa		13.65	□□□□□ -0.22
CASC3-208	ENST00000583649	TSEN34	Q9BSV6	310 aa	Known RBP	13.65	□□□□□ -0.22
CASC3-208	ENST00000583649	PBX4	Q9BYU1	374 aa		13.65	□□□□□ -0.22
CASC3-208	ENST00000583649	COPRS	Q9NQ92	184 aa		13.65	□□□□□ -0.22
CASC3-208	ENST00000583649	AATF	Q9NY61	560 aa	Known RBP eCLIP	13.65	□□□□□ -0.22
CASC3-208	ENST00000583649	FLT1	P17948	1338 aa		13.64	□□□□□ -0.23
CASC3-208	ENST00000583649		A0A1W2PQ45	241 aa	Predicted RBP	13.64	□□□□□ -0.23
CASC3-208	ENST00000583649		A0A1W2PQY0	241 aa		13.64	□□□□□ -0.23
CASC3-208	ENST00000583649	MOXD2P	A6NHM9	499 aa		13.64	□□□□□ -0.23
CASC3-208	ENST00000583649	FCER1A	P12319	257 aa		13.64	□□□□□ -0.23
CASC3-208	ENST00000583649	ITGB8	P26012	769 aa		13.64	□□□□□ -0.23
CASC3-208	ENST00000583649	HERVK_113	Q902F9	699 aa		13.64	□□□□□ -0.23
CASC3-208	ENST00000583649	BUD13	Q9BRD0	619 aa	Known RBP eCLIP	13.64	□□□□□ -0.23	1e-12	■□□□□ 10.1
CASC3-208	ENST00000583649	LRFN3	Q9BTN0	628 aa		13.64	□□□□□ -0.23
CASC3-208	ENST00000583649	SPATC1L	Q9H0A9	340 aa		13.64	□□□□□ -0.23
CASC3-208	ENST00000583649	RPAP3	Q9H6T3	665 aa	Predicted RBP	13.64	□□□□□ -0.23
CASC3-208	ENST00000583649	HMG20B	Q9P0W2	317 aa		13.64	□□□□□ -0.23
CASC3-208	ENST00000583649	BTBD7	Q9P203	1132 aa		13.64	□□□□□ -0.23
CASC3-208	ENST00000583649	PALD1	Q9ULE6	856 aa		13.64	□□□□□ -0.23
CASC3-208	ENST00000583649	SPDYE16	A6NNV3	312 aa	Predicted RBP	13.63	□□□□□ -0.23
CASC3-208	ENST00000583649	GTPBP6	O43824	516 aa	Predicted RBP	13.63	□□□□□ -0.23
CASC3-208	ENST00000583649	IGHA2	P01877	340 aa		13.63	□□□□□ -0.23
CASC3-208	ENST00000583649	AKR1A1	P14550	325 aa		13.63	□□□□□ -0.23
CASC3-208	ENST00000583649	ERCC3	P19447	782 aa		13.63	□□□□□ -0.23
CASC3-208	ENST00000583649	PPP4C	P60510	307 aa		13.63	□□□□□ -0.23
CASC3-208	ENST00000583649	FAAP100	Q0VG06	881 aa		13.63	□□□□□ -0.23
CASC3-208	ENST00000583649	PLS1	Q14651	629 aa		13.63	□□□□□ -0.23
CASC3-208	ENST00000583649	CERKL	Q49MI3	558 aa	Predicted RBP	13.63	□□□□□ -0.23
CASC3-208	ENST00000583649	NCAPG2	Q86XI2	1143 aa		13.63	□□□□□ -0.23
CASC3-208	ENST00000583649	GLT1D1	Q96MS3	346 aa		13.63	□□□□□ -0.23
CASC3-208	ENST00000583649	MOV10L1	Q9BXT6	1211 aa	Known RBP	13.63	□□□□□ -0.23
CASC3-208	ENST00000583649	TANGO6	Q9C0B7	1094 aa		13.63	□□□□□ -0.23
CASC3-208	ENST00000583649	CNPY2	Q9Y2B0	182 aa		13.63	□□□□□ -0.23
CASC3-208	ENST00000583649	TLR3	O15455	904 aa	Known RBP	13.62	□□□□□ -0.23
CASC3-208	ENST00000583649	BMP1	P13497	986 aa		13.62	□□□□□ -0.23
CASC3-208	ENST00000583649	ABCB5	Q2M3G0	1257 aa		13.62	□□□□□ -0.23
CASC3-208	ENST00000583649	PRAMEF19	Q5SWL8	479 aa		13.62	□□□□□ -0.23
CASC3-208	ENST00000583649	TBC1D9	Q6ZT07	1266 aa		13.62	□□□□□ -0.23
CASC3-208	ENST00000583649	TTC6	Q86TZ1	520 aa		13.62	□□□□□ -0.23
CASC3-208	ENST00000583649	MICALL1	Q8N3F8	863 aa		13.62	□□□□□ -0.23
CASC3-208	ENST00000583649	MRPL50	Q8N5N7	158 aa	Known RBP	13.62	□□□□□ -0.23
CASC3-208	ENST00000583649	ZNF384	Q8TF68	577 aa		13.62	□□□□□ -0.23
CASC3-208	ENST00000583649	MAML3	Q96JK9	1138 aa		13.62	□□□□□ -0.23
CASC3-208	ENST00000583649	SPC25	Q9HBM1	224 aa		13.62	□□□□□ -0.23
CASC3-208	ENST00000583649	SERPINB13	Q9UIV8	391 aa		13.62	□□□□□ -0.23
CASC3-208	ENST00000583649	SLC25A27	O95847	323 aa		13.61	□□□□□ -0.23
CASC3-208	ENST00000583649	PGK1	P00558	417 aa		13.61	□□□□□ -0.23
CASC3-208	ENST00000583649	PBX2	P40425	430 aa		13.61	□□□□□ -0.23
CASC3-208	ENST00000583649	USP5	P45974	858 aa		13.61	□□□□□ -0.23
CASC3-208	ENST00000583649	JAG1	P78504	1218 aa		13.61	□□□□□ -0.23
CASC3-208	ENST00000583649	TMEM240	Q5SV17	173 aa		13.61	□□□□□ -0.23
CASC3-208	ENST00000583649	VTI1A	Q96AJ9	217 aa		13.61	□□□□□ -0.23
CASC3-208	ENST00000583649	DNAJC18	Q9H819	358 aa		13.61	□□□□□ -0.23
CASC3-208	ENST00000583649	SAP30BP	Q9UHR5	308 aa	Known RBP	13.61	□□□□□ -0.23
CASC3-208	ENST00000583649	COG5	Q9UP83	839 aa		13.61	□□□□□ -0.23
CASC3-208	ENST00000583649	ZNF521	Q96K83	1311 aa		13.61	□□□□□ -0.23
CASC3-208	ENST00000583649	ERC2	O15083	957 aa		13.6	□□□□□ -0.23
CASC3-208	ENST00000583649	COBL	O75128	1261 aa		13.6	□□□□□ -0.23
CASC3-208	ENST00000583649	ARID4A	P29374	1257 aa	Predicted RBP	13.6	□□□□□ -0.23
CASC3-208	ENST00000583649	ACLY	P53396	1101 aa		13.6	□□□□□ -0.23
CASC3-208	ENST00000583649	TFCP2	Q12800	502 aa		13.6	□□□□□ -0.23
CASC3-208	ENST00000583649	KCTD2	Q14681	263 aa		13.6	□□□□□ -0.23
CASC3-208	ENST00000583649	TATDN1	Q6P1N9	297 aa		13.6	□□□□□ -0.23
CASC3-208	ENST00000583649	PCSK9	Q8NBP7	692 aa	Known RBP	13.6	□□□□□ -0.23
CASC3-208	ENST00000583649	EHD4	Q9H223	541 aa		13.6	□□□□□ -0.23
CASC3-208	ENST00000583649	PA2G4	Q9UQ80	394 aa	Known RBP	13.6	□□□□□ -0.23
CASC3-208	ENST00000583649	DIS3	Q9Y2L1	958 aa	Known RBP	13.6	□□□□□ -0.23
CASC3-208	ENST00000583649	ELP1	O95163	1332 aa		13.6	□□□□□ -0.23
CASC3-208	ENST00000583649	GPR37L1	O60883	481 aa		13.59	□□□□□ -0.23
CASC3-208	ENST00000583649	FGB	P02675	491 aa		13.59	□□□□□ -0.23
CASC3-208	ENST00000583649	COPB2	P35606	906 aa		13.59	□□□□□ -0.23
CASC3-208	ENST00000583649	ADGRE1	Q14246	886 aa		13.59	□□□□□ -0.23
CASC3-208	ENST00000583649	CCDC158	Q5M9N0	1113 aa		13.59	□□□□□ -0.23
CASC3-208	ENST00000583649	PPP2R2D	Q66LE6	453 aa		13.59	□□□□□ -0.23
CASC3-208	ENST00000583649	ZNF365	Q70YC5	407 aa		13.59	□□□□□ -0.23
CASC3-208	ENST00000583649	NECAB3	Q96P71	396 aa	Predicted RBP	13.59	□□□□□ -0.23
CASC3-208	ENST00000583649	MMP19	Q99542	508 aa		13.59	□□□□□ -0.23
CASC3-208	ENST00000583649	TINF2	Q9BSI4	451 aa		13.59	□□□□□ -0.23
CASC3-208	ENST00000583649	SH2D4A	Q9H788	454 aa		13.59	□□□□□ -0.23
CASC3-208	ENST00000583649	TBX21	Q9UL17	535 aa		13.59	□□□□□ -0.23
CASC3-208	ENST00000583649	ZNF236	Q9UL36	1845 aa		13.59	□□□□□ -0.23
CASC3-208	ENST00000583649	ROBO3	Q96MS0	1386 aa		13.58	□□□□□ -0.23
CASC3-208	ENST00000583649	GRXCR1	A8MXD5	290 aa		13.58	□□□□□ -0.24
CASC3-208	ENST00000583649	CSF2RA	P15509	400 aa		13.58	□□□□□ -0.24
CASC3-208	ENST00000583649	SHROOM1	Q2M3G4	852 aa	Predicted RBP	13.58	□□□□□ -0.24
CASC3-208	ENST00000583649	TTC39A	Q5SRH9	613 aa		13.58	□□□□□ -0.24
CASC3-208	ENST00000583649	RASIP1	Q5U651	963 aa		13.58	□□□□□ -0.24
CASC3-208	ENST00000583649	ALYREF	Q86V81	257 aa	Known RBP	13.58	□□□□□ -0.24
CASC3-208	ENST00000583649	MSL3	Q8N5Y2	521 aa	Known RBP	13.58	□□□□□ -0.24
CASC3-208	ENST00000583649	NKX2-4	Q9H2Z4	354 aa		13.58	□□□□□ -0.24
CASC3-208	ENST00000583649	FAM184B	Q9ULE4	1060 aa		13.58	□□□□□ -0.24
CASC3-208	ENST00000583649	SRGAP3	O43295	1099 aa		13.57	□□□□□ -0.24
CASC3-208	ENST00000583649	FLOT1	O75955	427 aa		13.57	□□□□□ -0.24
CASC3-208	ENST00000583649	PI16	Q6UXB8	463 aa		13.57	□□□□□ -0.24
CASC3-208	ENST00000583649	RPUSD2	Q8IZ73	545 aa	Known RBP	13.57	□□□□□ -0.24
CASC3-208	ENST00000583649	EPHX3	Q9H6B9	360 aa		13.57	□□□□□ -0.24

Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms