RNA–Protein interactions for RNA: ENST00000576149.5

VPS53-220, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 2,444 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-220ENST00000576149 NFIXQ14938 502 aa11.51□□□□□ -0.57
VPS53-220ENST00000576149 PFKFB3Q16875 520 aaPredicted RBP11.51□□□□□ -0.57
VPS53-220ENST00000576149 CFAP100Q494V2 611 aa11.51□□□□□ -0.57
VPS53-220ENST00000576149 VSTM4Q8IW00 320 aa11.51□□□□□ -0.57
VPS53-220ENST00000576149 ENOX1Q8TC92 643 aaKnown RBP11.51□□□□□ -0.57
VPS53-220ENST00000576149 EPSTI1Q96J88 318 aa11.51□□□□□ -0.57
VPS53-220ENST00000576149 PSMD1Q99460 953 aa11.51□□□□□ -0.57
VPS53-220ENST00000576149 A0A087X0B3 334 aa11.5□□□□□ -0.57
VPS53-220ENST00000576149 KIF5BP33176 963 aa11.5□□□□□ -0.57
VPS53-220ENST00000576149 FMR1Q06787 632 aaKnown RBP eCLIP11.5□□□□□ -0.578e-8■■■■■ 27.8
VPS53-220ENST00000576149 NOM1Q5C9Z4 860 aaKnown RBP11.5□□□□□ -0.57
VPS53-220ENST00000576149 TTC38Q5R3I4 469 aa11.5□□□□□ -0.57
VPS53-220ENST00000576149 DGKHQ86XP1 1220 aa11.5□□□□□ -0.57
VPS53-220ENST00000576149 CCDC112Q8NEF3 446 aa11.5□□□□□ -0.57
VPS53-220ENST00000576149 CCDC34Q96HJ3 373 aa11.5□□□□□ -0.57
VPS53-220ENST00000576149 LY75O60449 1722 aa11.5□□□□□ -0.57
VPS53-220ENST00000576149 TAF1LQ8IZX4 1826 aa11.5□□□□□ -0.57
VPS53-220ENST00000576149 XDHP47989 1333 aa11.5□□□□□ -0.57
VPS53-220ENST00000576149 PSDA5PKW4 1024 aaPredicted RBP11.5□□□□□ -0.57
VPS53-220ENST00000576149 UBAP1LF5GYI3 381 aa11.5□□□□□ -0.57
VPS53-220ENST00000576149 NRDCO43847 1150 aa11.5□□□□□ -0.57
VPS53-220ENST00000576149 SLFN14P0C7P3 912 aa11.5□□□□□ -0.57
VPS53-220ENST00000576149 CHRM1P11229 460 aaPredicted RBP11.5□□□□□ -0.57
VPS53-220ENST00000576149 ZNF18P17022 549 aa11.5□□□□□ -0.57
VPS53-220ENST00000576149 TRAPPC10P48553 1259 aa11.5□□□□□ -0.57
VPS53-220ENST00000576149 PPP4CP60510 307 aa11.5□□□□□ -0.57
VPS53-220ENST00000576149 ATP2C1P98194 919 aaPredicted RBP11.5□□□□□ -0.57
VPS53-220ENST00000576149 TFAP4Q01664 338 aa11.5□□□□□ -0.57
VPS53-220ENST00000576149 MAPK8IP2Q13387 824 aaPredicted RBP11.5□□□□□ -0.57
VPS53-220ENST00000576149 SYCP1Q15431 976 aa11.5□□□□□ -0.57
VPS53-220ENST00000576149 ZNF174Q15697 407 aa11.5□□□□□ -0.57
VPS53-220ENST00000576149 ZNF827Q17R98 1081 aa11.5□□□□□ -0.57
VPS53-220ENST00000576149 SH3RF1Q7Z6J0 888 aa11.5□□□□□ -0.57
VPS53-220ENST00000576149 SLC51AQ86UW1 340 aa11.5□□□□□ -0.57
VPS53-220ENST00000576149 CNBD1Q8NA66 436 aa11.5□□□□□ -0.57
VPS53-220ENST00000576149 ANKRD7Q92527 254 aa11.5□□□□□ -0.57
VPS53-220ENST00000576149 ANKS1AQ92625 1134 aa11.5□□□□□ -0.57
VPS53-220ENST00000576149 SYMPKQ92797 1274 aaKnown RBP11.5□□□□□ -0.57
VPS53-220ENST00000576149 DHX58Q96C10 678 aa11.5□□□□□ -0.57
VPS53-220ENST00000576149 IL17RBQ9NRM6 502 aa11.5□□□□□ -0.57
VPS53-220ENST00000576149 ROBO3Q96MS0 1386 aa11.5□□□□□ -0.57
VPS53-220ENST00000576149 KIF2AO00139 706 aaPredicted RBP11.49□□□□□ -0.57
VPS53-220ENST00000576149 VEGFAP15692 232 aaPredicted RBP11.49□□□□□ -0.57
VPS53-220ENST00000576149 USP5P45974 858 aa11.49□□□□□ -0.57
VPS53-220ENST00000576149 NLRP5P59047 1200 aa11.49□□□□□ -0.57
VPS53-220ENST00000576149 GSTO1P78417 241 aa11.49□□□□□ -0.57
VPS53-220ENST00000576149 GLIPR1L2Q4G1C9 344 aa11.49□□□□□ -0.57
VPS53-220ENST00000576149 FAM196AQ6ZSG2 479 aa11.49□□□□□ -0.57
VPS53-220ENST00000576149 C15orf52Q6ZUT6 534 aaKnown RBP11.49□□□□□ -0.57
VPS53-220ENST00000576149 SH3RF3Q8TEJ3 882 aaPredicted RBP11.49□□□□□ -0.57
VPS53-220ENST00000576149 KAT14Q9H8E8 782 aa11.49□□□□□ -0.57
VPS53-220ENST00000576149 INTS13Q9NVM9 706 aa11.49□□□□□ -0.57
VPS53-220ENST00000576149 TMEM232C9JQI7 657 aa11.49□□□□□ -0.57
VPS53-220ENST00000576149 BAG3O95817 575 aa11.49□□□□□ -0.57
VPS53-220ENST00000576149 ERCC5P28715 1186 aaPredicted RBP11.49□□□□□ -0.57
VPS53-220ENST00000576149 PTGDRQ13258 359 aa11.49□□□□□ -0.57
VPS53-220ENST00000576149 GRIK5Q16478 980 aa11.49□□□□□ -0.57
VPS53-220ENST00000576149 SLC4A8Q2Y0W8 1093 aa11.49□□□□□ -0.57
VPS53-220ENST00000576149 CT47A1Q5JQC4 288 aaPredicted RBP11.49□□□□□ -0.57
VPS53-220ENST00000576149 ZNF804AQ7Z570 1209 aa11.49□□□□□ -0.57
VPS53-220ENST00000576149 SECISBP2LQ93073 1101 aaKnown RBP11.49□□□□□ -0.57
VPS53-220ENST00000576149 PAGE5Q96GU1 130 aa11.49□□□□□ -0.57
VPS53-220ENST00000576149 PPP1R13BQ96KQ4 1090 aa11.49□□□□□ -0.57
VPS53-220ENST00000576149 MED15Q96RN5 788 aa11.49□□□□□ -0.57
VPS53-220ENST00000576149 TMX1Q9H3N1 280 aa11.49□□□□□ -0.57
VPS53-220ENST00000576149 NFE2L3Q9Y4A8 694 aa11.49□□□□□ -0.57
VPS53-220ENST00000576149 TOP1P11387 765 aaKnown RBP11.48□□□□□ -0.57
VPS53-220ENST00000576149 PLCD1P51178 756 aa11.48□□□□□ -0.57
VPS53-220ENST00000576149 DIXDC1Q155Q3 683 aa11.48□□□□□ -0.57
VPS53-220ENST00000576149 PIK3AP1Q6ZUJ8 805 aa11.48□□□□□ -0.57
VPS53-220ENST00000576149 DYNLL2Q96FJ2 89 aa11.48□□□□□ -0.57
VPS53-220ENST00000576149 SBF2Q86WG5 1849 aa11.48□□□□□ -0.57
VPS53-220ENST00000576149 LDHCP07864 332 aa11.48□□□□□ -0.57
VPS53-220ENST00000576149 CCDC178Q5BJE1 867 aa11.48□□□□□ -0.57
VPS53-220ENST00000576149 PRR5LQ6MZQ0 368 aa11.48□□□□□ -0.57
VPS53-220ENST00000576149 TEX2Q8IWB9 1127 aa11.48□□□□□ -0.57
VPS53-220ENST00000576149 PNMA1Q8ND90 353 aa11.48□□□□□ -0.57
VPS53-220ENST00000576149 KIF18AQ8NI77 898 aa11.48□□□□□ -0.57
VPS53-220ENST00000576149 MKNK2Q9HBH9 465 aa11.48□□□□□ -0.57
VPS53-220ENST00000576149 SH3GLB2Q9NR46 395 aa11.48□□□□□ -0.57
VPS53-220ENST00000576149 TCP11L1Q9NUJ3 509 aa11.48□□□□□ -0.57
VPS53-220ENST00000576149 SPATA31A6Q5VVP1 1343 aa11.47□□□□□ -0.57
VPS53-220ENST00000576149 VWA3AA6NCI4 1184 aa11.47□□□□□ -0.57
VPS53-220ENST00000576149 ADAMTS3O15072 1205 aa11.47□□□□□ -0.57
VPS53-220ENST00000576149 CALML3P27482 149 aa11.47□□□□□ -0.57
VPS53-220ENST00000576149 AFMP43652 599 aa11.47□□□□□ -0.57
VPS53-220ENST00000576149 NCBP1Q09161 790 aaKnown RBP11.47□□□□□ -0.57
VPS53-220ENST00000576149 DPYDQ12882 1025 aa11.47□□□□□ -0.57
VPS53-220ENST00000576149 AMOTL1Q8IY63 956 aa11.47□□□□□ -0.57
VPS53-220ENST00000576149 TRMT44Q8IYL2 757 aaKnown RBP11.47□□□□□ -0.57
VPS53-220ENST00000576149 CERKQ8TCT0 537 aa11.47□□□□□ -0.57
VPS53-220ENST00000576149 GNAQP50148 359 aa11.47□□□□□ -0.57
VPS53-220ENST00000576149 GPSM2P81274 684 aa11.47□□□□□ -0.57
VPS53-220ENST00000576149 TBX2Q13207 712 aaPredicted RBP11.47□□□□□ -0.57
VPS53-220ENST00000576149 GRM4Q14833 912 aa11.47□□□□□ -0.57
VPS53-220ENST00000576149 HSP90AA4PQ58FG1 418 aa11.47□□□□□ -0.57
VPS53-220ENST00000576149 STAG2Q8N3U4 1231 aa11.47□□□□□ -0.57
VPS53-220ENST00000576149 TGFBRAP1Q8WUH2 860 aa11.47□□□□□ -0.57
VPS53-220ENST00000576149 GJD4Q96KN9 370 aaPredicted RBP11.47□□□□□ -0.57
VPS53-220ENST00000576149 GSDMAQ96QA5 445 aa11.47□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms