RNA–Protein interactions for RNA: ENST00000572607.1

VPS53-214, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 732 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-214ENST00000572607 GNRH1P01148 92 aa9.72□□□□□ -0.85
VPS53-214ENST00000572607 GH2P01242 217 aa9.72□□□□□ -0.85
VPS53-214ENST00000572607 CYP2C8P10632 490 aa9.72□□□□□ -0.85
VPS53-214ENST00000572607 HOXD10P28358 340 aa9.72□□□□□ -0.85
VPS53-214ENST00000572607 HMGCS2P54868 508 aa9.72□□□□□ -0.85
VPS53-214ENST00000572607 LACTBP83111 547 aaPredicted RBP9.72□□□□□ -0.85
VPS53-214ENST00000572607 MTMR2Q13614 643 aa9.72□□□□□ -0.85
VPS53-214ENST00000572607 MOGSQ13724 837 aa9.72□□□□□ -0.85
VPS53-214ENST00000572607 RRP1BQ14684 758 aaKnown RBP9.72□□□□□ -0.85
VPS53-214ENST00000572607 RAB3GAP1Q15042 981 aa9.72□□□□□ -0.85
VPS53-214ENST00000572607 ABCB5Q2M3G0 1257 aa9.72□□□□□ -0.85
VPS53-214ENST00000572607 GPAT2Q6NUI2 795 aa9.72□□□□□ -0.85
VPS53-214ENST00000572607 TATDN1Q6P1N9 297 aa9.72□□□□□ -0.85
VPS53-214ENST00000572607 C17orf99Q6UX52 265 aa9.72□□□□□ -0.85
VPS53-214ENST00000572607 EXOC6Q8TAG9 804 aa9.72□□□□□ -0.85
VPS53-214ENST00000572607 APPBP2Q92624 585 aa9.72□□□□□ -0.85
VPS53-214ENST00000572607 ZNF333Q96JL9 665 aa9.72□□□□□ -0.85
VPS53-214ENST00000572607 ADAM33Q9BZ11 813 aa9.72□□□□□ -0.85
VPS53-214ENST00000572607 PRKAB2O43741 272 aa9.71□□□□□ -0.86
VPS53-214ENST00000572607 GNAT2P19087 354 aa9.71□□□□□ -0.86
VPS53-214ENST00000572607 PLCD1P51178 756 aa9.71□□□□□ -0.86
VPS53-214ENST00000572607 PTPN5P54829 565 aa9.71□□□□□ -0.86
VPS53-214ENST00000572607 PRMT2P55345 433 aa9.71□□□□□ -0.86
VPS53-214ENST00000572607 FCGRTP55899 365 aa9.71□□□□□ -0.86
VPS53-214ENST00000572607 BACE1P56817 501 aa9.71□□□□□ -0.86
VPS53-214ENST00000572607 IRX3P78415 501 aaPredicted RBP9.71□□□□□ -0.86
VPS53-214ENST00000572607 SLFNL1Q499Z3 407 aa9.71□□□□□ -0.86
VPS53-214ENST00000572607 SH3D19Q5HYK7 790 aa9.71□□□□□ -0.86
VPS53-214ENST00000572607 PI4K2BQ8TCG2 481 aa9.71□□□□□ -0.86
VPS53-214ENST00000572607 PUS7LQ9H0K6 701 aaKnown RBP9.71□□□□□ -0.86
VPS53-214ENST00000572607 ARPP21Q9UBL0 812 aaPredicted RBP9.71□□□□□ -0.86
VPS53-214ENST00000572607 LAMA3Q16787 3333 aa9.7□□□□□ -0.86
VPS53-214ENST00000572607 APPP05067 770 aa9.7□□□□□ -0.86
VPS53-214ENST00000572607 CYP2D6P10635 497 aa9.7□□□□□ -0.86
VPS53-214ENST00000572607 SHMT1P34896 483 aa9.7□□□□□ -0.86
VPS53-214ENST00000572607 PSMC4P43686 418 aa9.7□□□□□ -0.86
VPS53-214ENST00000572607 GCLCP48506 637 aaPredicted RBP9.7□□□□□ -0.86
VPS53-214ENST00000572607 TDO2P48775 406 aa9.7□□□□□ -0.86
VPS53-214ENST00000572607 USP14P54578 494 aa9.7□□□□□ -0.86
VPS53-214ENST00000572607 TREML2Q5T2D2 321 aa9.7□□□□□ -0.86
VPS53-214ENST00000572607 B4GALNT3Q6L9W6 998 aa9.7□□□□□ -0.86
VPS53-214ENST00000572607 USP17L2Q6R6M4 530 aa9.7□□□□□ -0.86
VPS53-214ENST00000572607 OTUD7AQ8TE49 926 aaPredicted RBP9.7□□□□□ -0.86
VPS53-214ENST00000572607 NACAP1Q9BZK3 213 aa9.7□□□□□ -0.86
VPS53-214ENST00000572607 ADGRA2Q96PE1 1338 aa9.7□□□□□ -0.86
VPS53-214ENST00000572607 FOCADQ5VW36 1801 aa9.7□□□□□ -0.86
VPS53-214ENST00000572607 USP17L12C9JPN9 530 aa9.69□□□□□ -0.86
VPS53-214ENST00000572607 USP17L21D6R901 530 aa9.69□□□□□ -0.86
VPS53-214ENST00000572607 GPAA1O43292 621 aa9.69□□□□□ -0.86
VPS53-214ENST00000572607 CHGBP05060 677 aa9.69□□□□□ -0.86
VPS53-214ENST00000572607 BCRP11274 1271 aa9.69□□□□□ -0.86
VPS53-214ENST00000572607 GABPAQ06546 454 aa9.69□□□□□ -0.86
VPS53-214ENST00000572607 SLC9C1Q4G0N8 1177 aa9.69□□□□□ -0.86
VPS53-214ENST00000572607 GIMAP6Q6P9H5 292 aa9.69□□□□□ -0.86
VPS53-214ENST00000572607 THSD4Q6ZMP0 1018 aa9.69□□□□□ -0.86
VPS53-214ENST00000572607 TMEM179Q6ZVK1 233 aa9.69□□□□□ -0.86
VPS53-214ENST00000572607 NBPF11Q86T75 865 aa9.69□□□□□ -0.86
VPS53-214ENST00000572607 SMC5Q8IY18 1101 aa9.69□□□□□ -0.86
VPS53-214ENST00000572607 NAV1Q8NEY1 1877 aa9.69□□□□□ -0.86
VPS53-214ENST00000572607 RAET1EQ8TD07 263 aa9.69□□□□□ -0.86
VPS53-214ENST00000572607 GTF3C2Q8WUA4 911 aaPredicted RBP9.69□□□□□ -0.86
VPS53-214ENST00000572607 EVI5LQ96CN4 794 aa9.69□□□□□ -0.86
VPS53-214ENST00000572607 ALPK3Q96L96 1907 aa9.69□□□□□ -0.86
VPS53-214ENST00000572607 CCDC17Q96LX7 622 aa9.69□□□□□ -0.86
VPS53-214ENST00000572607 STRBPQ96SI9 672 aaKnown RBP9.69□□□□□ -0.86
VPS53-214ENST00000572607 LNPKQ9C0E8 428 aa9.69□□□□□ -0.86
VPS53-214ENST00000572607 SH2D4AQ9H788 454 aa9.69□□□□□ -0.86
VPS53-214ENST00000572607 ZNF287Q9HBT7 754 aa9.69□□□□□ -0.86
VPS53-214ENST00000572607 ARHGEF10LQ9HCE6 1279 aa9.69□□□□□ -0.86
VPS53-214ENST00000572607 EMILIN3Q9NT22 766 aa9.69□□□□□ -0.86
VPS53-214ENST00000572607 MYO5AQ9Y4I1 1855 aaKnown RBP9.69□□□□□ -0.86
VPS53-214ENST00000572607 PTCH2Q9Y6C5 1203 aa9.69□□□□□ -0.86
VPS53-214ENST00000572607 MYPNQ86TC9 1320 aa9.68□□□□□ -0.86
VPS53-214ENST00000572607 GOLGA8CPA6NN73 597 aa9.68□□□□□ -0.86
VPS53-214ENST00000572607 TRIM6-TRIM34B2RNG4 842 aa9.68□□□□□ -0.86
VPS53-214ENST00000572607 TNPO2O14787 897 aaKnown RBP9.68□□□□□ -0.86
VPS53-214ENST00000572607 PDE1AP54750 535 aa9.68□□□□□ -0.86
VPS53-214ENST00000572607 JAG1P78504 1218 aa9.68□□□□□ -0.86
VPS53-214ENST00000572607 ZYXQ15942 572 aaKnown RBP9.68□□□□□ -0.86
VPS53-214ENST00000572607 FAM110CQ1W6H9 321 aa9.68□□□□□ -0.86
VPS53-214ENST00000572607 SHROOM1Q2M3G4 852 aaPredicted RBP9.68□□□□□ -0.86
VPS53-214ENST00000572607 C12orf60Q5U649 245 aa9.68□□□□□ -0.86
VPS53-214ENST00000572607 CHD1LQ86WJ1 897 aa9.68□□□□□ -0.86
VPS53-214ENST00000572607 ANKRD13CQ8N6S4 541 aa9.68□□□□□ -0.86
VPS53-214ENST00000572607 OSBP2Q969R2 916 aa9.68□□□□□ -0.86
VPS53-214ENST00000572607 SHISA4Q96DD7 197 aa9.68□□□□□ -0.86
VPS53-214ENST00000572607 DYNLL2Q96FJ2 89 aa9.68□□□□□ -0.86
VPS53-214ENST00000572607 ARHGAP39Q9C0H5 1083 aa9.68□□□□□ -0.86
VPS53-214ENST00000572607 ASCC2Q9H1I8 757 aaPredicted RBP9.68□□□□□ -0.86
VPS53-214ENST00000572607 MKNK2Q9HBH9 465 aa9.68□□□□□ -0.86
VPS53-214ENST00000572607 STAP2Q9UGK3 403 aa9.68□□□□□ -0.86
VPS53-214ENST00000572607 A0A0C4DFX4 3053 aa9.68□□□□□ -0.86
VPS53-214ENST00000572607 MGAMO43451 1857 aa9.68□□□□□ -0.86
VPS53-214ENST00000572607 SIPA1L1O43166 1804 aa9.68□□□□□ -0.86
VPS53-214ENST00000572607 SALL3Q9BXA9 1300 aa9.67□□□□□ -0.86
VPS53-214ENST00000572607 MYH1P12882 1939 aa9.67□□□□□ -0.86
VPS53-214ENST00000572607 CYP2D7A0A087X1C5 515 aa9.67□□□□□ -0.86
VPS53-214ENST00000572607 MINDY4BA8MYZ0 360 aa9.67□□□□□ -0.86
VPS53-214ENST00000572607 USP17L15C9J2P7 530 aa9.67□□□□□ -0.86
VPS53-214ENST00000572607 USP17L13C9JLJ4 530 aa9.67□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms