RNA–Protein interactions for RNA: ENST00000569336.2

CLN6-209, Transcript of CLN6, transmembrane ER protein, humanhuman

Gene CLN6, Length 557 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6-209ENST00000569336 HABP4Q5JVS0 413 aaKnown RBP11.66□□□□□ -0.54
CLN6-209ENST00000569336 ZNF589Q86UQ0 364 aaPredicted RBP11.66□□□□□ -0.54
CLN6-209ENST00000569336 ANKRD13CQ8N6S4 541 aa11.66□□□□□ -0.54
CLN6-209ENST00000569336 ACER1Q8TDN7 264 aa11.66□□□□□ -0.54
CLN6-209ENST00000569336 ANAPC4Q9UJX5 808 aa11.66□□□□□ -0.54
CLN6-209ENST00000569336 SYNPO2Q9UMS6 1093 aa11.66□□□□□ -0.54
CLN6-209ENST00000569336 MKI67P46013 3256 aaKnown RBP11.66□□□□□ -0.54
CLN6-209ENST00000569336 SMIM22K7EJ46 135 aa11.65□□□□□ -0.54
CLN6-209ENST00000569336 WDR46O15213 610 aaKnown RBP11.65□□□□□ -0.54
CLN6-209ENST00000569336 FOXP2O15409 715 aa11.65□□□□□ -0.54
CLN6-209ENST00000569336 FMNL1O95466 1100 aaPredicted RBP11.65□□□□□ -0.54
CLN6-209ENST00000569336 PSMC4P43686 418 aa11.65□□□□□ -0.54
CLN6-209ENST00000569336 NT5C2P49902 561 aa11.65□□□□□ -0.54
CLN6-209ENST00000569336 ATP2B2Q01814 1243 aa11.65□□□□□ -0.54
CLN6-209ENST00000569336 VPS53Q5VIR6 699 aa11.65□□□□□ -0.54
CLN6-209ENST00000569336 STK11IPQ8N1F8 1099 aa11.65□□□□□ -0.54
CLN6-209ENST00000569336 TANGO6Q9C0B7 1094 aa11.65□□□□□ -0.54
CLN6-209ENST00000569336 VCPKMTQ9H867 229 aa11.65□□□□□ -0.54
CLN6-209ENST00000569336 HPS5Q9UPZ3 1129 aa11.65□□□□□ -0.54
CLN6-209ENST00000569336 PTPN22Q9Y2R2 807 aa11.65□□□□□ -0.54
CLN6-209ENST00000569336 TMX2Q9Y320 296 aa11.65□□□□□ -0.54
CLN6-209ENST00000569336 DNAH12Q6ZR08 3092 aa11.64□□□□□ -0.55
CLN6-209ENST00000569336 A0A1W2PRG0 241 aa11.64□□□□□ -0.55
CLN6-209ENST00000569336 TSPY2A6NKD2 308 aa11.64□□□□□ -0.55
CLN6-209ENST00000569336 TNPO2O14787 897 aaKnown RBP11.64□□□□□ -0.55
CLN6-209ENST00000569336 ORC4O43929 436 aa11.64□□□□□ -0.55
CLN6-209ENST00000569336 PRDM1O75626 825 aa11.64□□□□□ -0.55
CLN6-209ENST00000569336 EEF2P13639 858 aaKnown RBP11.64□□□□□ -0.55
CLN6-209ENST00000569336 CLEC10AQ8IUN9 316 aa11.64□□□□□ -0.55
CLN6-209ENST00000569336 TRIM47Q96LD4 638 aa11.64□□□□□ -0.55
CLN6-209ENST00000569336 DSCC1Q9BVC3 393 aa11.64□□□□□ -0.55
CLN6-209ENST00000569336 RNF41Q9H4P4 317 aaPredicted RBP11.64□□□□□ -0.55
CLN6-209ENST00000569336 RPAP3Q9H6T3 665 aaPredicted RBP11.64□□□□□ -0.55
CLN6-209ENST00000569336 NYAP2Q9P242 653 aa11.64□□□□□ -0.55
CLN6-209ENST00000569336 MORF4L1Q9UBU8 362 aa11.64□□□□□ -0.55
CLN6-209ENST00000569336 MYPNQ86TC9 1320 aa11.63□□□□□ -0.55
CLN6-209ENST00000569336 TTLL1O95922 423 aa11.63□□□□□ -0.55
CLN6-209ENST00000569336 FGAP02671 866 aa11.63□□□□□ -0.55
CLN6-209ENST00000569336 CCNA1P78396 465 aa11.63□□□□□ -0.55
CLN6-209ENST00000569336 CTDSPL2Q05D32 466 aa11.63□□□□□ -0.55
CLN6-209ENST00000569336 SLC9C1Q4G0N8 1177 aa11.63□□□□□ -0.55
CLN6-209ENST00000569336 ERICH6BQ5W0A0 696 aa11.63□□□□□ -0.55
CLN6-209ENST00000569336 LBX2Q6XYB7 198 aa11.63□□□□□ -0.55
CLN6-209ENST00000569336 CATSPERGQ6ZRH7 1159 aa11.63□□□□□ -0.55
CLN6-209ENST00000569336 NBPF11Q86T75 865 aa11.63□□□□□ -0.55
CLN6-209ENST00000569336 CCAR1Q8IX12 1150 aaKnown RBP11.63□□□□□ -0.55
CLN6-209ENST00000569336 GPRC5AQ8NFJ5 357 aa11.63□□□□□ -0.55
CLN6-209ENST00000569336 NEDD1Q8NHV4 660 aa11.63□□□□□ -0.55
CLN6-209ENST00000569336 COA7Q96BR5 231 aa11.63□□□□□ -0.55
CLN6-209ENST00000569336 ARHGAP39Q9C0H5 1083 aa11.63□□□□□ -0.55
CLN6-209ENST00000569336 TOMM22Q9NS69 142 aa11.63□□□□□ -0.55
CLN6-209ENST00000569336 SRRDQ9UH36 339 aa11.63□□□□□ -0.55
CLN6-209ENST00000569336 CTNNA3Q9UI47 895 aa11.63□□□□□ -0.55
CLN6-209ENST00000569336 DDX52Q9Y2R4 599 aaKnown RBP eCLIP11.63□□□□□ -0.55
CLN6-209ENST00000569336 LCTP09848 1927 aa11.62□□□□□ -0.55
CLN6-209ENST00000569336 IGKV6D-41A0A0C4DH26 115 aa11.62□□□□□ -0.55
CLN6-209ENST00000569336 ZNF213O14771 459 aa11.62□□□□□ -0.55
CLN6-209ENST00000569336 RAD21O60216 631 aa11.62□□□□□ -0.55
CLN6-209ENST00000569336 RANBP6O60518 1105 aaKnown RBP11.62□□□□□ -0.55
CLN6-209ENST00000569336 MAPK4P31152 587 aa11.62□□□□□ -0.55
CLN6-209ENST00000569336 ERVK-9P63128 1117 aa11.62□□□□□ -0.55
CLN6-209ENST00000569336 ERVK-24P63145 666 aa11.62□□□□□ -0.55
CLN6-209ENST00000569336 TFAP4Q01664 338 aa11.62□□□□□ -0.55
CLN6-209ENST00000569336 IMMTQ16891 758 aaKnown RBP11.62□□□□□ -0.55
CLN6-209ENST00000569336 MFSD6Q6ZSS7 791 aa11.62□□□□□ -0.55
CLN6-209ENST00000569336 MB21D1Q8N884 522 aa11.62□□□□□ -0.55
CLN6-209ENST00000569336 RAET1EQ8TD07 263 aa11.62□□□□□ -0.55
CLN6-209ENST00000569336 CEP95Q96GE4 821 aa11.62□□□□□ -0.55
CLN6-209ENST00000569336 P2RX7Q99572 595 aaKnown RBP11.62□□□□□ -0.55
CLN6-209ENST00000569336 PAGR1Q9BTK6 254 aa11.62□□□□□ -0.55
CLN6-209ENST00000569336 CWC22Q9HCG8 908 aaKnown RBP11.62□□□□□ -0.55
CLN6-209ENST00000569336 MTMR4Q9NYA4 1195 aa11.62□□□□□ -0.55
CLN6-209ENST00000569336 HOXC10Q9NYD6 342 aa11.62□□□□□ -0.55
CLN6-209ENST00000569336 RABGAP1Q9Y3P9 1069 aa11.62□□□□□ -0.55
CLN6-209ENST00000569336 BAZ2BQ9UIF8 2168 aaKnown RBP11.62□□□□□ -0.55
CLN6-209ENST00000569336 CEP290O15078 2479 aa11.61□□□□□ -0.55
CLN6-209ENST00000569336 SPDYE16A6NNV3 312 aaPredicted RBP11.61□□□□□ -0.55
CLN6-209ENST00000569336 DLL1O00548 723 aa11.61□□□□□ -0.55
CLN6-209ENST00000569336 FLOT1O75955 427 aa11.61□□□□□ -0.55
CLN6-209ENST00000569336 CHMLP26374 656 aa11.61□□□□□ -0.55
CLN6-209ENST00000569336 HAND2P61296 217 aa11.61□□□□□ -0.55
CLN6-209ENST00000569336 COG2Q14746 738 aa11.61□□□□□ -0.55
CLN6-209ENST00000569336 BMP2KLQ5H9B9 411 aa11.61□□□□□ -0.55
CLN6-209ENST00000569336 AKNAD1Q5T1N1 836 aa11.61□□□□□ -0.55
CLN6-209ENST00000569336 SIAH1Q8IUQ4 282 aa11.61□□□□□ -0.55
CLN6-209ENST00000569336 SPICE1Q8N0Z3 855 aa11.61□□□□□ -0.55
CLN6-209ENST00000569336 GMCL1P1Q8NEA9 526 aa11.61□□□□□ -0.55
CLN6-209ENST00000569336 STAG1Q8WVM7 1258 aa11.61□□□□□ -0.55
CLN6-209ENST00000569336 SOCS4Q8WXH5 440 aa11.61□□□□□ -0.55
CLN6-209ENST00000569336 GNL3Q9BVP2 549 aaKnown RBP eCLIP11.61□□□□□ -0.55
CLN6-209ENST00000569336 PTCH2Q9Y6C5 1203 aa11.61□□□□□ -0.55
CLN6-209ENST00000569336 ECM2O94769 699 aaPredicted RBP11.6□□□□□ -0.55
CLN6-209ENST00000569336 FGRP09769 529 aa11.6□□□□□ -0.55
CLN6-209ENST00000569336 CTGFP29279 349 aa11.6□□□□□ -0.55
CLN6-209ENST00000569336 CAP1Q01518 475 aa11.6□□□□□ -0.55
CLN6-209ENST00000569336 FAM47AQ5JRC9 791 aa11.6□□□□□ -0.55
CLN6-209ENST00000569336 RRP12Q5JTH9 1297 aaKnown RBP11.6□□□□□ -0.55
CLN6-209ENST00000569336 CASC1Q6TDU7 716 aa11.6□□□□□ -0.55
CLN6-209ENST00000569336 SLAIN1Q8ND83 568 aa11.6□□□□□ -0.55
CLN6-209ENST00000569336 ESR2Q92731 530 aa11.6□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms