RNA–Protein interactions for RNA: ENST00000568472.6

CLN3-234, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 1,011 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-234ENST00000568472 USP17L18D6R9N7 530 aa25.9■■□□□ 1.74
CLN3-234ENST00000568472 USP17L22D6RA61 530 aa25.9■■□□□ 1.74
CLN3-234ENST00000568472 USP17L17D6RBQ6 530 aa25.9■■□□□ 1.74
CLN3-234ENST00000568472 USP17L19D6RCP7 530 aa25.9■■□□□ 1.74
CLN3-234ENST00000568472 USP17L20D6RJB6 530 aa25.9■■□□□ 1.74
CLN3-234ENST00000568472 E7EWF7 191 aa25.9■■□□□ 1.74
CLN3-234ENST00000568472 SLC27A2O14975 620 aa25.9■■□□□ 1.74
CLN3-234ENST00000568472 TLR2O60603 784 aa25.9■■□□□ 1.74
CLN3-234ENST00000568472 KDM4AO75164 1064 aa25.9■■□□□ 1.74
CLN3-234ENST00000568472 HSPA8P11142 646 aaKnown RBP25.9■■□□□ 1.74
CLN3-234ENST00000568472 VCAM1P19320 739 aa25.9■■□□□ 1.74
CLN3-234ENST00000568472 USP17L24Q0WX57 530 aa25.9■■□□□ 1.74
CLN3-234ENST00000568472 RALYLQ86SE5 291 aaKnown RBP25.9■■□□□ 1.74
CLN3-234ENST00000568472 NCOA7Q8NI08 942 aa25.9■■□□□ 1.74
CLN3-234ENST00000568472 ZSWIM5Q9P217 1185 aa25.9■■□□□ 1.74
CLN3-234ENST00000568472 STX8Q9UNK0 236 aa25.9■■□□□ 1.74
CLN3-234ENST00000568472 LAMA4Q16363 1823 aa25.89■■□□□ 1.74
CLN3-234ENST00000568472 B4E1Z4 1266 aa25.89■■□□□ 1.74
CLN3-234ENST00000568472 ZKSCAN1P17029 563 aaPredicted RBP25.89■■□□□ 1.74
CLN3-234ENST00000568472 IRX3P78415 501 aaPredicted RBP25.89■■□□□ 1.74
CLN3-234ENST00000568472 DGKHQ86XP1 1220 aa25.89■■□□□ 1.74
CLN3-234ENST00000568472 GMCL1P1Q8NEA9 526 aa25.89■■□□□ 1.74
CLN3-234ENST00000568472 GREB1LQ9C091 1923 aaPredicted RBP25.88■■□□□ 1.73
CLN3-234ENST00000568472 WDR46O15213 610 aaKnown RBP25.88■■□□□ 1.73
CLN3-234ENST00000568472 TSGA10IPQ3SY00 556 aa25.88■■□□□ 1.73
CLN3-234ENST00000568472 SMCR8Q8TEV9 937 aaPredicted RBP25.88■■□□□ 1.73
CLN3-234ENST00000568472 GTF3C2Q8WUA4 911 aaPredicted RBP25.88■■□□□ 1.73
CLN3-234ENST00000568472 ASCC2Q9H1I8 757 aaPredicted RBP25.88■■□□□ 1.73
CLN3-234ENST00000568472 F5H6K3 240 aa25.87■■□□□ 1.73
CLN3-234ENST00000568472 GPR25O00155 361 aa25.87■■□□□ 1.73
CLN3-234ENST00000568472 GCLCP48506 637 aaPredicted RBP25.87■■□□□ 1.73
CLN3-234ENST00000568472 KLRC3Q07444 240 aa25.87■■□□□ 1.73
CLN3-234ENST00000568472 DGKZQ13574 1117 aa25.87■■□□□ 1.73
CLN3-234ENST00000568472 CATSPERGQ6ZRH7 1159 aa25.87■■□□□ 1.73
CLN3-234ENST00000568472 RPAP3Q9H6T3 665 aaPredicted RBP25.87■■□□□ 1.73
CLN3-234ENST00000568472 PRDM10Q9NQV6 1147 aa25.87■■□□□ 1.73
CLN3-234ENST00000568472 NMT2O60551 498 aa25.86■■□□□ 1.73
CLN3-234ENST00000568472 TOP1P11387 765 aaKnown RBP25.86■■□□□ 1.73
CLN3-234ENST00000568472 KRT32Q14532 448 aa25.86■■□□□ 1.73
CLN3-234ENST00000568472 ANKS1AQ92625 1134 aa25.86■■□□□ 1.73
CLN3-234ENST00000568472 ZSCAN10Q96SZ4 725 aaPredicted RBP25.86■■□□□ 1.73
CLN3-234ENST00000568472 UBAC1Q9BSL1 405 aa25.86■■□□□ 1.73
CLN3-234ENST00000568472 TSKSQ9UJT2 592 aa25.86■■□□□ 1.73
CLN3-234ENST00000568472 LOC285556D6RIA3 1793 aa25.86■■□□□ 1.73
CLN3-234ENST00000568472 PTPRFP10586 1907 aa25.86■■□□□ 1.73
CLN3-234ENST00000568472 CYP2C8P10632 490 aa25.85■■□□□ 1.73
CLN3-234ENST00000568472 LBX1P52954 281 aa25.85■■□□□ 1.73
CLN3-234ENST00000568472 C17orf99Q6UX52 265 aa25.85■■□□□ 1.73
CLN3-234ENST00000568472 MTA3Q9BTC8 594 aa25.85■■□□□ 1.73
CLN3-234ENST00000568472 R3HDMLQ9H3Y0 253 aa25.85■■□□□ 1.73
CLN3-234ENST00000568472 HOXC10Q9NYD6 342 aa25.85■■□□□ 1.73
CLN3-234ENST00000568472 FKTNO75072 461 aa25.84■■□□□ 1.73
CLN3-234ENST00000568472 NDUFB10O96000 172 aa25.84■■□□□ 1.73
CLN3-234ENST00000568472 HSPA4P34932 840 aa25.84■■□□□ 1.73
CLN3-234ENST00000568472 COG2Q14746 738 aa25.84■■□□□ 1.73
CLN3-234ENST00000568472 SART3Q15020 963 aaKnown RBP25.84■■□□□ 1.73
CLN3-234ENST00000568472 SPICE1Q8N0Z3 855 aa25.84■■□□□ 1.73
CLN3-234ENST00000568472 KCNB2Q92953 911 aa25.84■■□□□ 1.73
CLN3-234ENST00000568472 RAD21O60216 631 aa25.83■■□□□ 1.73
CLN3-234ENST00000568472 SP3Q02447 781 aa25.83■■□□□ 1.73
CLN3-234ENST00000568472 KIAA1755Q5JYT7 1200 aa25.83■■□□□ 1.73
CLN3-234ENST00000568472 SLFN13Q68D06 897 aa25.83■■□□□ 1.73
CLN3-234ENST00000568472 STOX1Q6ZVD7 989 aa25.83■■□□□ 1.73
CLN3-234ENST00000568472 LRRC47Q8N1G4 583 aaKnown RBP25.83■■□□□ 1.73
CLN3-234ENST00000568472 GMCL1Q96IK5 515 aa25.83■■□□□ 1.73
CLN3-234ENST00000568472 P2RX7Q99572 595 aaKnown RBP25.83■■□□□ 1.73
CLN3-234ENST00000568472 TMEM47Q9BQJ4 181 aa25.83■■□□□ 1.73
CLN3-234ENST00000568472 TANGO6Q9C0B7 1094 aa25.83■■□□□ 1.73
CLN3-234ENST00000568472 TAF6LQ9Y6J9 622 aa25.83■■□□□ 1.73
CLN3-234ENST00000568472 ADGRA2Q96PE1 1338 aa25.83■■□□□ 1.73
CLN3-234ENST00000568472 ERICH2A1L162 156 aa25.82■■□□□ 1.72
CLN3-234ENST00000568472 MCCP23508 829 aa25.82■■□□□ 1.72
CLN3-234ENST00000568472 HERVK_113P62684 666 aa25.82■■□□□ 1.72
CLN3-234ENST00000568472 ARHGEF6Q15052 776 aa25.82■■□□□ 1.72
CLN3-234ENST00000568472 RCSD1Q6JBY9 416 aa25.82■■□□□ 1.72
CLN3-234ENST00000568472 USP26Q9BXU7 913 aa25.82■■□□□ 1.72
CLN3-234ENST00000568472 MYPNQ86TC9 1320 aa25.82■■□□□ 1.72
CLN3-234ENST00000568472 HMGB1P09429 215 aaKnown RBP25.81■■□□□ 1.72
CLN3-234ENST00000568472 MCM5P33992 734 aa25.81■■□□□ 1.72
CLN3-234ENST00000568472 LBX2Q6XYB7 198 aa25.81■■□□□ 1.72
CLN3-234ENST00000568472 MB21D2Q8IYB1 491 aaPredicted RBP25.81■■□□□ 1.72
CLN3-234ENST00000568472 NKX2-3Q8TAU0 364 aa25.81■■□□□ 1.72
CLN3-234ENST00000568472 ZNF296Q8WUU4 475 aaPredicted RBP25.81■■□□□ 1.72
CLN3-234ENST00000568472 ZKSCAN3Q9BRR0 538 aa25.81■■□□□ 1.72
CLN3-234ENST00000568472 BCRP11274 1271 aa25.8■■□□□ 1.72
CLN3-234ENST00000568472 CYB5R4Q7L1T6 521 aa25.8■■□□□ 1.72
CLN3-234ENST00000568472 ENAHQ8N8S7 591 aaPredicted RBP25.8■■□□□ 1.72
CLN3-234ENST00000568472 DCAF4Q8WV16 495 aa25.8■■□□□ 1.72
CLN3-234ENST00000568472 ERO1AQ96HE7 468 aa25.8■■□□□ 1.72
CLN3-234ENST00000568472 CPA4Q9UI42 421 aa25.8■■□□□ 1.72
CLN3-234ENST00000568472 TNKSO95271 1327 aa25.8■■□□□ 1.72
CLN3-234ENST00000568472 FLOT1O75955 427 aa25.79■■□□□ 1.72
CLN3-234ENST00000568472 BMP3P12645 472 aa25.79■■□□□ 1.72
CLN3-234ENST00000568472 SLC1A4P43007 532 aa25.79■■□□□ 1.72
CLN3-234ENST00000568472 FAM110CQ1W6H9 321 aa25.79■■□□□ 1.72
CLN3-234ENST00000568472 FAM83BQ5T0W9 1011 aa25.79■■□□□ 1.72
CLN3-234ENST00000568472 MB21D1Q8N884 522 aa25.79■■□□□ 1.72
CLN3-234ENST00000568472 NEK1Q96PY6 1258 aa25.79■■□□□ 1.72
CLN3-234ENST00000568472 KAT14Q9H8E8 782 aa25.79■■□□□ 1.72
CLN3-234ENST00000568472 FEM1BQ9UK73 627 aa25.79■■□□□ 1.72
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms